Epigenetic changes in the early stage of silica-induced cell transformation

References

• Bakand, S., and A. Hayes. 2016. “Toxicological Considerations, Toxicity Assessment, and Risk Management of Inhaled Nanoparticles.” International Journal of Molecular Sciences 17: 929.
   Web of Science ®Google Scholar
• Belinsky, S. A., S. S. Snow, K. J. Nikula, G. L. Finch, C. S. Tellez, and W. A. Palmisano. 2002. “Aberrant CpG Island Methylation of the p16(INK4a) and Estrogen Receptor Genes in Rat Lung Tumors Induced by Particulate Carcinogens.” Carcinogenesis 23: 335–339.
   PubMed Web of Science ®Google Scholar
• Bhattacharjee, P., and S. Paul. 2016. “Risk of Occupational Exposure to Asbestos, Silicon and Arsenic on Pulmonary Disorders: Understanding The Genetic-Epigenetic Interplay and Future Prospects.” Environmental Research 147: 425–434.
   PubMed Web of Science ®Google Scholar
• Bradbury, C. A., F. L. Khanim, R. Hayden, C. M. Bunce, D. A. White, M. T. Drayson, C. Craddock, and B. M. Turner. 2005. “Histone Deacetylases in Acute Myeloid Leukaemia Show A Distinctive Pattern of Expression That Changes Selectively in Response to Deacetylase Inhibitors.” Leukemia 19: 1751–1759.
   PubMed Web of Science ®Google Scholar
• Carpenter, R. L., Y. Jiang, Y. Jing, J. He, Y. Rojanasakul, L. Z. Liu, and B. H. Jiang. 2011. “Arsenite Induces Cell Transformation by Reactive Oxygen Species, AKT, ERK1/2, and p70S6K1.” Biochemical and Biophysical Research Communications 414: 533–538.
   PubMed Web of Science ®Google Scholar
• Chen, Z., M. Soutto, B. Rahman, M. W. Fazili, D. Peng, M. Blanca Piazuelo, H. Chen, M. Kay Washington, Y. Shyr, and W. El-Rifai. 2017. “Integrated Expression Analysis Identifies Transcription Networks in Mouse and Human Gastric Neoplasia.” Genes, Chromosomes & Cancer 56: 535–547.
   PubMed Web of Science ®Google Scholar
• Darne, C., C. Coulais, F. Terzetti, C. Fontana, S. Binet, L. Gate, and Y. Guichard. 2016. “In Vitro Comet and Micronucleus Assays Do Not Predict Morphological Transforming Effects of Silica Particles in Syrian Hamster Embryo Cells.” Mutat Res Genet Toxicol Environ Mutagen 796: 23–33.
   PubMed Web of Science ®Google Scholar
• Deshpande, A., P. K. Narayanan, and B. E. Lehnert. 2002. “Silica-Induced Generation of Extracellular Factor(s) Increases Reactive Oxygen Species in Human Bronchial Epithelial Cells.” Toxicological Sciences: An Official Journal of the Society of Toxicology 67: 275–283.
   PubMed Web of Science ®Google Scholar
• Di Cristo, L., D. Movia, M. G. Bianchi, M. Allegri, B. M. Mohamed, A. P. Bell, C. Moore, et al. 2016. “Proinflammatory Effects of Pyrogenic and Precipitated Amorphous Silica Nanoparticles in Innate Immunity Cells.” Toxicological Sciences: An Official Journal of the Society of Toxicology 150: 40–53.
   PubMed Web of Science ®Google Scholar
• Elias, Z., O. Poirot, M. C. Daniere, F. Terzetti, A. M. Marande, S. Dzwigaj, H. Pezerat, I. Fenoglio, and B. Fubini. 2000. “Cytotoxic and Transforming Effects of Silica Particles with Different Surface Properties in Syrian Hamster Embryo (SHE) Cells.” Toxicology in Vitro: An International Journal Published in Association with Bibra 14: 409–422.
   PubMed Web of Science ®Google Scholar
• Elias, Z., O. Poirot, I. Fenoglio, M. Ghiazza, M. C. Daniere, F. Terzetti, C. Darne, C. Coulais, I. Matekovits, and B. Fubini. 2006. “Surface Reactivity, Cytotoxic, and Morphological Transforming Effects of Diatomaceous Earth Products in Syrian Hamster Embryo Cells.” Toxicological Sciences: An Official Journal of the Society of Toxicology 91: 510–520.
   PubMed Web of Science ®Google Scholar
• Facchini, L. M., S. Chen, W. W. Marhin, J. N. Lear, and L. Z. Penn. 1997. “The Myc Negative Autoregulation Mechanism Requires Myc-Max Association and Involves the c-myc P2 Minimal Promoter.” Molecular and Cellular Biology 17: 100–114.
   PubMed Web of Science ®Google Scholar
• Flores, I., D. J. Murphy, L. B. Swigart, U. Knies, and G. I. Evan. 2004. “Defining the Temporal Requirements for Myc in the Progression and Maintenance of Skin Neoplasia.” Oncogene 23: 5923–5930.
   PubMed Web of Science ®Google Scholar
• Fontana, C., A. Kirsch, C. Seidel, L. Marpeaux, C. Darne, L. Gaté, A. Remy, and Y. Guichard. 2017. “In Vitro Cell Transformation Induced by Synthetic Amorphous Silica Nanoparticles.” Mutation Research – Genetic Toxicology and Environmental Mutagenesis 823: 22–27.
   Web of Science ®Google Scholar
• Gama-Sosa, M. A., V. A. Slagel, R. W. Trewyn, R. Oxenhandler, K. C. Kuo, C. W. Gehrke, and M. Ehrlich. 1983. “The 5-methylcytosine Content of DNA from Human Tumors.” Nucleic Acids Research 11: 6883–6894.
   PubMed Web of Science ®Google Scholar
• Gartel, A. L., X. Ye, E. Goufman, P. Shianov, N. Hay, F. Najmabadi, and A. L. Tyner. 2001. “Myc Represses the p21(WAF1/CIP1) Promoter and Interacts with Sp1/Sp3.” Proceedings of the National Academy of Sciences of the United States of America USA 98: 4510–4515.
   PubMed Web of Science ®Google Scholar
• Geiman, T. M., and K. D. Robertson. 2002. “Chromatin Remodeling, Histone Modifications, and DNA Methylation-How Does It All Fit Together?.” Journal of Cellular Biochemistry 87: 117–125.
   PubMed Web of Science ®Google Scholar
• Gong, C., G. Tao, L. Yang, J. Liu, Q. Liu, W. Li, and Z. Zhuang. 2012. “Methylation of PARP-1 Promoter Involved in the Regulation of Nano-SiO2-Induced Decrease of PARP-1 mRNA Expression.” Toxicology Letters 209: 264–269.
   PubMed Web of Science ®Google Scholar
• Gong, C., G. Tao, L. Yang, J. Liu, Q. Liu, and Z. Zhuang. 2010. “SiO(2) Nanoparticles Induce Global Genomic Hypomethylation in HaCaT Cells.” Biochemical and Biophysical Research Communications 397: 397–400.
   PubMed Web of Science ®Google Scholar
• Guichard, Y., C. Fontana, E. Chavinier, F. Terzetti, L. Gate, S. Binet, and C. Darne. 2016. “Cytotoxic and Genotoxic Evaluation of Different Synthetic Amorphous Silica Nanomaterials in the V79 Cell Line.” Toxicology and Industrial Health 32: 1639–1650.
   PubMed Web of Science ®Google Scholar
• Hatamochi, A., M. Ono, H. Ueki, and M. Namba. 1991. “Regulation of collagen gene expression by transformed human fibroblasts: decreased type I and type III collagen RNA transcription.” The Journal of Investigative Dermatology 96: 473–477.
   PubMed Web of Science ®Google Scholar
• Hu, H. M., K. Kanda, L. Zhang, and L. M. Boxer. 2007. “Activation of the c-myc p1 Promoter in Burkitt's Lymphoma by the hs3 Immunoglobulin Heavy-Chain Gene Enhancer.” Leukemia 21: 747–753.
   PubMed Web of Science ®Google Scholar
• Johnston, C. J., K. E. Driscoll, J. N. Finkelstein, R. Baggs, M. A. O’reilly, J. Carter, R. Gelein, and G. Oberdorster. 2000. “Pulmonary Chemokine And Mutagenic Responses in Rats After Subchronic Inhalation of Amorphous and Crystalline Silica.” Toxicological Sciences: An Official Journal of the Society of Toxicology 56: 405–413.
   PubMed Web of Science ®Google Scholar
• Knaapen, A. M., C. Albrecht, A. Becker, D. Hohr, A. Winzer, G. R. Haenen, P. J. Borm, and R. P. Schins. 2002. “DNA Damage in Lung Epithelial cells Isolated From Rats Exposed to Quartz: Role of Surface Reactivity and Neutrophilic Inflammation.” Carcinogenesis 23: 1111–1120.
   PubMed Web of Science ®Google Scholar
• Koenig, A., T. Linhart, K. Schlengemann, K. Reutlinger, J. Wegele, G. Adler, G. Singh, et al. 2010. “NFAT-induced Histone Acetylation Relay Switch Promotes c-Myc-dependent Growth in Pancreatic Cancer Cells.” Gastroenterology 138: 1189–1199.e1–2.
   PubMed Web of Science ®Google Scholar
• Lin, C. Y., J. Loven, P. B. Rahl, R. M. Paranal, C. B. Burge, J. E. Bradner, T. I. Lee, and R. A. Young. 2012. “Transcriptional Amplification In Tumor Cells with Elevated c-Myc.” Cell 151: 56–67.
   PubMed Web of Science ®Google Scholar
• Liu, X., Q. Gao, P. Li, Q. Zhao, J. Zhang, J. Li, H. Koseki, and J. Wong. 2013. “UHRF1 Targets DNMT1 for DNA Methylation Through Cooperative Binding of Hemi-Methylated DNA and Methylated H3K9.” Nature Communications 4: 1563.
   PubMed Web of Science ®Google Scholar
• Lu, X., I. R. Miousse, S. V. Pirela, S. Melnyk, I. Koturbash, and P. Demokritou. 2016. “Short-Term Exposure to Engineered Nanomaterials Affects Cellular Epigenome.” Nanotoxicology 10: 140–150.
   PubMed Web of Science ®Google Scholar
• Luo, Y., and M. O. Krause. 1994. “Changes in Promoter Utilization in Human and Mouse c-myc Genes Upon Transformation Induction in Temperature-Sensitive Cell Lines.” Journal of Cellular Physiology 160: 303–315.
   PubMed Web of Science ®Google Scholar
• Mischler, S. E., E. G. Cauda, M. Di Giuseppe, L. J. Mcwilliams, C. St Croix, M. Sun, J. Franks, and L. A. Ortiz. 2016. “Differential Activation of RAW 264.7 Macrophages by Size-Segregated Crystalline Silica.” Journal of Occupational Medicine and Toxicology (London, England) 11: 57.
   PubMed Web of Science ®Google Scholar
• International Agency for Research on Cancer (IARC). 1997. “Silica, Some Silicates, Coal Dust and Para-Aramdi Fibrils.” IARC Monographs on the Evaluation of Carcinogenic Risks to Humans, Volume 68, Lyon, France.
   Google Scholar
• Murugadoss, S., D. Lison, L. Godderis, S. Van Den Brule, J. Mast, F. Brassinne, N. Sebaihi, and P. H. Hoet. 2017. “Toxicology of Silica Nanoparticles: An Update.” Archieves of Toxicology. Advance online publication.
   PubMed Web of Science ®Google Scholar
• O’connell, B. C., A. F. Cheung, C. P. Simkevich, W. Tam, X. Ren, M. K. Mateyak, and J. M. Sedivy. 2003. “A Large Scale Genetic Analysis of c-Myc-Regulated Gene Expression Patterns.” The Journal of Biological Chemistry 278: 12563–12573.
   PubMed Web of Science ®Google Scholar
• Organisation for Economic Co-operation and Development (OECD). 2016. Guidance Document on the In Vitro Bhas 42 Cell Transformation Assay. Series on Testing & Assessment No. 231. ENV/JM/MONO (2016)1. Paris: Environment Directorate, OECD.
   Google Scholar
• Patil, N. A., W. N. Gade, and D. D. Deobagkar. 2016. “Epigenetic Modulation Upon Exposure of Lung Fibroblasts to TiO2 and ZnO Nanoparticles: Alterations in DNA Methylation.” International Journal of Nanomedicine 11: 4509–4519.
   PubMed Web of Science ®Google Scholar
• Pelengaris, S., M. Khan, and G. Evan. 2002. “c-MYC: More Than Just a Matter of Life And Death.” Nature Reviews. Cancer 2: 764–776.
   PubMed Web of Science ®Google Scholar
• Rasmussen, K., A. Mech, J. Mast, P. J. De Temmerman, E. Van Doren, N. Waegeneers, F. Van Steen, J. C. Pizzolon, L. De Temmerman, and K. A. Jensen. 2013. Synthetic Amorphous Silicon Dioxide (NM-200, NM-201, NM-202, NM-203, NM-204). Characterisation and Physico-Chemical Properties. JRC repository: NM-series of Representative Manufactured Banomaterials. EUR - Scientific and Technical Research Reports. Publications Office of the European Union. 200 p. http://www.jrc.ec.europa.eu/
   Google Scholar
• Robertson, K. D., E. Uzvolgyi, G. Liang, C. Talmadge, J. Sumegi, F. A. Gonzales, and P. A. Jones. 1999. “The human DNA Methyltransferases (DNMTs) 1, 3a and 3b: Coordinate mRNA Expression in Normal Tissues and Overexpression in Tumors.” Nucleic Acids Research 27: 2291–2298.
   PubMed Web of Science ®Google Scholar
• Saffiotti, U., and N. Ahmed. 1995. “Neoplastic Transformation by Quartz in the BALB/3T3/A31-1-1 Cell Line and the Effects of Associated Minerals.” Teratogenesis, Carcinogenesis, and Mutagenesis 15: 339–356.
   PubMedGoogle Scholar
• Sasaki, K., H. Mizusawa, and M. Ishidate. 1988. “Isolation and Characterization of Ras-transfected BALB/3T3 Clone Showing Morphological Transformation by 12-O-tetradecanoyl-phorbol-13-acetate.” Japanese Journal of Cancer Research: Gann 79: 921–930. https://www.jstage.jst.go.jp/browse/cancersci1959.
   PubMedGoogle Scholar
• Seidel, C., C. Florean, M. Schnekenburger, M. Dicato, and M. Diederich. 2012. “Chromatin-Modifying Agents in Anti-cancer Therapy.” Biochimie 94: 2264–2279.
   PubMed Web of Science ®Google Scholar
• Seidel, C., M. Schnekenburger, M. Dicato, and M. Diederich. 2014. “Antiproliferative and Proapoptotic Activities of 4-hydroxybenzoic Acid-based Inhibitors of Histone Deacetylases.” Cancer Letters 343: 134–146.
   PubMed Web of Science ®Google Scholar
• Seidel, C., M. Schnekenburger, M. Dicato, and M. Diederich. 2015. “Histone Deacetylase 6 in Health and Disease.” Epigenomics 7: 103–118.
   PubMed Web of Science ®Google Scholar
• Stoccoro, A., H. L. Karlsson, F. Coppede, and L. Migliore. 2013. “Epigenetic Effects of Nano-sized Materials.” Toxicology 313: 3–14.
   PubMed Web of Science ®Google Scholar
• Uboldi, C., G. Giudetti, F. Broggi, D. Gilliland, J. Ponti, and F. Rossi. 2012. “Amorphous Silica Nanoparticles Do Not Induce Cytotoxicity, Cell Transformation or Genotoxicity in Balb/3T3 Mouse Fibroblasts.” Mutation Research 745: 11–20.
   PubMed Web of Science ®Google Scholar
• Visconti, R., R. Della Monica, and D. Grieco. 2016. “Cell Cycle Checkpoint in cancer: A Therapeutically Targetable Double-edged Sword.” Journal of Experimental & Clinical Cancer Research 35: 153.
   PubMed Web of Science ®Google Scholar
• Weber, M., J. J. Davies, D. Wittig, E. J. Oakeley, M. Haase, W. L. Lam, and D. Schubeler. 2005. “Chromosome-wide and Promoter-specific Analyses Identify Sites of Differential DNA Methylation In Normal And Transformed Human Cells.” Nature Genetics 37: 853–862.
   PubMed Web of Science ®Google Scholar
• Wilting, R. H., and J. H. Dannenberg. 2012. “Epigenetic Mechanisms in Tumorigenesis, Tumor Cell Heterogeneity and Drug Resistance.” Drug Resistance Updates: Reviews and Commentaries in Antimicrobial and Anticancer Chemotherapy 15: 21–38.
   PubMed Web of Science ®Google Scholar
• Winter, M., M. A. Moser, D. Meunier, C. Fischer, G. Machat, K. Mattes, B. M. Lichtenberger, et al. 2013. “Divergent Roles of HDAC1 and HDAC2 in the Regulation of Epidermal Development and Tumorigenesis.” The EMBO Journal 32: 3176–3191.
   PubMed Web of Science ®Google Scholar
• Yamaguchi, T., F. Cubizolles, Y. Zhang, N. Reichert, H. Kohler, C. Seiser, and P. Matthias. 2010. “Histone Deacetylases 1 and 2 act in Concert to promote the G1-to-S progression.” Genes & Development 24: 455–469.
   PubMed Web of Science ®Google Scholar
• Yang, B. S., T. J. Geddes, R. J. Pogulis, B. De Crombrugghe, and S. O. Freytag. 1991. “Transcriptional Suppression of Cellular Gene Expression by c-Myc.” Molecular and Cellular Biology 11: 2291–2295.
   PubMed Web of Science ®Google Scholar
• Yang, S., B. J. Misner, R. J. Chiu, and F. L. Meyskens Jr. 2007. “Redox Effector factor-1, Combined With Reactive Oxygen Species, Plays an Important Role in the Transformation of JB6 Cells.” Carcinogenesis 28: 2382–2390.
   PubMed Web of Science ®Google Scholar
• Zeman, M. K., and K. A. Cimprich. 2014. “Causes and Consequences of Replication Stress.” Nature Cell Biology 16: 2–9.
   PubMed Web of Science ®Google Scholar
• Zhou, A. Y., and S. Ryeom. 2014. “Cyclosporin A Promotes Tumor Angiogenesis in A Calcineurin-Independent Manner by Increasing Mitochondrial Reactive Oxygen Species.” Molecular Cancer Research 12: 1663–1676.
   PubMed Web of Science ®Google Scholar