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Articles

Silver, titanium dioxide, and zinc oxide nanoparticles trigger miRNA/isomiR expression changes in THP-1 cells that are proportional to their health hazard potential

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Pages 1380-1395 | Received 10 Jan 2019, Accepted 22 Aug 2019, Published online: 13 Sep 2019

References

  • Agarwal, Vikram, George W. Bell, Jin Wu Nam, and David P. Bartel. 2015. “Predicting Effective MicroRNA Target Sites in Mammalian MRNAs.” ELife 4(AUGUST2015): 1–38. doi:10.7554/eLife.05005.
  • Baños-Lara, Ma Del Rocio, Jovanny Zabaleta, Jone Garai, Melody Baddoo, and Antonieta Guerrero-Plata. 2018. “Comparative Analysis of MiRNA Profile in Human Dendritic Cells Infected with Respiratory Syncytial Virus and Human Metapneumovirus.” BMC Research Notes 11(1): 1–7. doi:10.1186/s13104-018-3541-0.
  • Baras, Alexander S., Christopher J. Mitchell, Jason R. Myers, Simone Gupta, Lien Chun Weng, John M. Ashton, Toby C. Cornish, Akhilesh Pandey, and Marc K. Halushka. 2015. “MiRge – a Multiplexed Method of Processing Small RNA-Seq Data to Determine MicroRNA Entropy.” PLoS One 10(11): e0143066–16. doi:10.1371/journal.pone.0143066.
  • Bartel, David P. 2004. “Review MicroRNAs: Genomics, Biogenesis, Mechanism, and Function Ulation of Hematopoietic Lineage Differentiation in Mam-Mals (Chen et al., 2004), and Control of Leaf and Flower Development in Plants (Aukerman and Sakai, 2003.” Cell 116(2): 281–297.
  • Bartel, David P. 2009. “MicroRNAs: Target Recognition and Regulatory Functions.” Cell 136(2): 215–233. doi:10.1016/j.cell.2009.01.002.
  • Bracken, Cameron P., Hamish S. Scott, and Gregory J. Goodall. 2016. “A Network-Biology Perspective of MicroRNA Function and Dysfunction in Cancer.” Nature Reviews Genetics 17(12): 719–732. doi: 10.1038/nrg.2016.134.
  • Choi, Seon Young, Pan Dong Ryu, Sang-Woo Joo, and So Yeong Lee. 2018. “Alteration of MicroRNA Expression Profiles by Surface-Modified Gold Nanoparticles in Human Lung Adenocarcinoma Cells.” Journal of Nanoscience and Nanotechnology 18(4): 3024–3030. doi:10.1166/jnn.2018.14395.
  • Cleaves, H. James, Caroline M. Jonsson, Christopher L. Jonsson, Dimitri A. Sverjensky, and Robert M. Hazen. 2010. “Adsorption of Nucleic Acid Components on Rutile (TiO2) Surfaces.” Astrobiology 10(3): 311–323. doi:10.1089/ast.2009.0397.
  • Contado, Catia. 2015. “Nanomaterials in Consumer Products: A Challenging Analytical Problem.” Frontiers in Chemistry 3(August): 48. doi:10.3389/fchem.2015.00048.
  • Deloid, Glen M., Joel M. Cohen, Georgios Pyrgiotakis, and Philip Demokritou. 2017. “Preparation, Characterization, and in Vitro Dosimetry of Dispersed, Engineered Nanomaterials.” Nature Protocols 12(2): 355–371. doi:10.1038/nprot.2016.172.
  • Desvignes, T., P. Batzel, E. Berezikov, K. Eilbeck, J. T. Eppig, M. S. McAndrews, A. Singer, and J. H. Postlethwait. 2015. “MiRNA Nomenclature: A View Incorporating Genetic Origins, Biosynthetic Pathways, and Sequence Variants.” Trends in Genetics 31(11): 613–626. doi:10.1016/j.tig.2015.09.002.
  • Eom, Hyun-Jeong, Nivedita Chatterjee, Jeongsoo Lee, and Jinhee Choi. 2014. “Integrated MRNA and Micro RNA Profiling Reveals Epigenetic Mechanism of Differential Sensitivity of Jurkat T Cells to AgNPs and Ag Ions.” Toxicology Letters 229(1): 311–318. doi:10.1016/j.toxlet.2014.05.019.
  • Fadeel, Bengt, Lucian Farcal, Barry Hardy, Socorro Vázquez-Campos, Danail Hristozov, Antonio Marcomini, Iseult Lynch, Eugenia Valsami-Jones, Harri Alenius, and Kai Savolainen. 2018. “Advanced Tools for the Safety Assessment of Nanomaterials.” Nature Nanotechnology 13(7): 537–543. doi:10.1038/s41565-018-0185-0.
  • Gebert, Luca F. R., and Ian J. MacRae. 2018. “Regulation of MicroRNA Function in Animals.” Nature Reviews Molecular Cell Biology 20: 21–37. doi:10.1038/s41580-018-0045-7.
  • He, Rong, Xiaoyun Xie, Linyue Lv, Yongqi Huang, Xianmin Xia, Xiaowu Chen, and Lei Zhang. 2017. “Comprehensive Investigation of Aberrant MicroRNAs Expression in Cells Culture Model of MnCl2-Induced Neurodegenerative Disease.” Biochemical and Biophysical Research Communications 486(2): 342–348. doi:10.1016/j.bbrc.2017.03.041.
  • Hibio, Naoki, Kimihiro Hino, Eigo Shimizu, Yoshiro Nagata, and Kumiko Ui-Tei. 2012. “Stability of MiRNA 5′Terminal and Seed Regions Is Correlated with Experimentally Observed MiRNA-Mediated Silencing Efficacy.” Scientific Reports 2(1): 21–26. doi:10.1038/srep00996.
  • Hristozov, Danail R., Stefania Gottardo, Andrea Critto, and Antonio Marcomini. 2012. “Risk Assessment of Engineered Nanomaterials: A Review of Available Data and Approaches from a Regulatory Perspective.” Nanotoxicology 6(8): 880–819. doi:10.3109/17435390.2011.626534.
  • Hristozov, Danail, Stefania Gottardo, Elena Semenzin, Agnes Oomen, Peter Bos, Willie Peijnenburg, Martie van Tongeren, Bernd Nowack, Neil Hunt, and Andrea Brunelli. 2016. “Frameworks and Tools for Risk Assessment of Manufactured Nanomaterials.” Environment International 95: 36–53. doi:10.1016/j.envint.2016.07.016.
  • Huang, Yan, Xiaoying Lü, and Jingwu Ma. 2014. “Toxicity of Silver Nanoparticles to Human Dermal Fibroblasts on MicroRNA Level.” Journal of Biomedical Nanotechnology 10(11): 3304–3317.
  • Jimenez, Luis A., Marissa A. Gionet-Gonzales, Sabrina Sedano, Jocelyn G. Carballo, Yomara Mendez, and Wenwan Zhong. 2018. “Extraction of MicroRNAs from Biological Matrices with Titanium Dioxide Nanofibers.” Analytical and Bioanalytical Chemistry 410(3): 1053–1060. doi:10.1007/s00216-017-0649-3.
  • Kallio Aleksi, M., Jarno T. Tuimala, Taavi Hupponen, Petri Klemelä, Massimiliano Gentile, Ilari Scheinin, Mikko Koski, Janne Käki, and Eija I. Korpelainen. 2011. “Chipster: User-Friendly Analysis Software for Microarray and Other High-Throughput Data.” BMC Genomics 12: 507. doi:10.1186/1471-2164-12-507.
  • Love, Michael I., Wolfgang Huber, and Simon Anders. 2014. “Moderated Estimation of Fold Change and Dispersion for RNA-Seq Data with DESeq2.”Genome Biology 15(12): 1–21. doi:10.1186/s13059-014-0550-8.
  • Mi, Huaiyu, Xiaosong Huang, Anushya Muruganujan, Haiming Tang, Caitlin Mills, Diane Kang, and Paul D. Thomas. 2017. “PANTHER Version 11: Expanded Annotation Data from Gene Ontology and Reactome Pathways, and Data Analysis Tool Enhancements.” Nucleic Acids Research 45(D1): D183–89. doi:10.1093/nar/gkw1138.
  • Montoya, Alex, Luisa Beltran, Pedro Casado, Juan-Carlos Rodríguez-Prados, and Pedro R. Cutillas. 2011. “Characterization of a TiO2 Enrichment Method for Label-Free Quantitative Phosphoproteomics.” Methods 54(4): 370–378. doi:10.1016/j.ymeth.2011.02.004.
  • Naqvi, Afsar Raza, Jezrom B. Fordham, and Salvador Nares. 2015. “MiR-24, MiR-30b, and MiR-142-3p Regulate Phagocytosis in Myeloid Inflammatory Cells.” Journal of Immunology (Baltimore, MD.: 1950) 194(4): 1916–1927. doi:10.4049/jimmunol.1401893.
  • Neilsen, Corine T., Gregory J. Goodall, and Cameron P. Bracken. 2012. “ IsomiRs-the Overlooked Repertoire in the Dynamic microRNAome.” Trends in Genetics: TIG 28(11): 544–549. doi:10.1016/j.tig.2012.07.005.
  • Piccinno, Fabiano, Fadri Gottschalk, Stefan Seeger, and Bernd Nowack. 2012. “Industrial Production Quantities and Uses of Ten Engineered Nanomaterials in Europe and the World.” Journal of Nanoparticle Research 14(9): 1109. doi:10.1007/s11051-012-1109-9.
  • Poon, Wing-Lam, Harri Alenius, Joseph Ndika, Vittorio Fortino, Vesa Kolhinen, Arūnas Meščeriakovas, Mingfu Wang, Dario Greco, Anna Lähde, Jorma Jokiniemi., et al. 2017. “Nano-Sized Zinc Oxide and Silver, but Not Titanium Dioxide, Induce Innate and Adaptive Immunity and Antiviral Response in Differentiated THP-1 Cells.” Nanotoxicology 11(7): 936. doi:10.1080/17435390.2017.1382600.
  • Rohart, Florian, Benoît Gautier, Amrit Singh, and Kim Anh Lê Cao. 2017. “MixOmics: An R Package for ‘Omics Feature Selection and Multiple Data Integration.” PLoS Computational Biology 13(11): e1005752–19. doi:10.1371/journal.pcbi.1005752.
  • Schultz, Carolin L., Anye Wamucho, Olga V. Tsyusko, Jason M. Unrine, Alison Crossley, Claus Svendsen, and David J. Spurgeon. 2016. “Multigenerational Exposure to Silver Ions and Silver Nanoparticles Reveals Heightened Sensitivity and Epigenetic Memory in Caenorhabditis Elegans.” Proceedings of the Royal Society B: Biological Sciences 283(1832). doi:10.1098/rspb.2015.2911.
  • Shen, Wei-Wei, Zhi Zeng, Wen-Xia Zhu, and Guo-Hui Fu. 2013. “MiR-142-3p Functions as a Tumor Suppressor by Targeting CD133, ABCG2, and Lgr5 in Colon Cancer Cells.” Journal of Molecular Medicine 91(8): 989–1000. doi:10.1007/s00109-013-1037-x.
  • Shi, Hongbo, Ruth Magaye, Vincent Castranova, and Jinshun Zhao. 2013. “Titanium Dioxide Nanoparticles: A Review of Current Toxicological Data.” Particle and Fibre Toxicology 10(1): 15. doi:10.1186/1743-8977-10-15.
  • Shyamasundar, Sukanya, Cheng Teng Ng, Lin Yue Lanry Yung, Shaikali Thameem Dheen, and Boon Huat Bay. 2015. “Epigenetic Mechanisms in Nanomaterial-Induced Toxicity.” Epigenomics 7(3): 395–411. doi:10.2217/epi.15.3.
  • Stokowy, Tomasz, Markus Eszlinger, Michał Świerniak, Krzysztof Fujarewicz, Barbara Jarząb, Ralf Paschke, and Knut Krohn. 2014. “Analysis Options for High-Throughput Sequencing in MiRNA Expression Profiling.” BMC Research Notes 7(1): 144. doi:10.1186/1756-0500-7-144.
  • Su, Jen-Liang, Pai-Sheng Chen, Gunnar Johansson, and Min-Liang Kuo. 2012. “Function and Regulation of Let-7 Family MicroRNAs.” MicroRNA E 1(1): 34–39. doi:10.2174/2211536611201010034.
  • Tan, Geok Chin, Elcie Chan, Attila Molnar, Rupa Sarkar, Diana Alexieva, Ihsan Mad Isa, Sophie Robinson, Shuchen Zhang, Peter Ellis, Cordelia F. Langford., et al. 2014. “5' isomiR Variation is of Functional and Evolutionary Importance.” Nucleic Acids Research 42(14): 9424–9435. doi:10.1093/nar/gku656.
  • Thingholm, Tine E., Thomas J. D. Jørgensen, Ole N. Jensen, and Martin R. Larsen. 2006. “Highly Selective Enrichment of Phosphorylated Peptides Using Titanium Dioxide.” Nature Protocols 1(4): 1929. doi:10.1038/nprot.2006.185.
  • Tyanova, Stefka, Tikira Temu, Pavel Sinitcyn, Arthur Carlson, Marco Y. Hein, Tamar Geiger, Matthias Mann, and Jürgen Cox. 2016. “The Perseus Computational Platform for Comprehensive Analysis of (Prote)Omics Data.” Nature Methods 13(9): 731–740. doi:10.1038/nmeth.3901.
  • Wong, Belinda Shu Ee., Qidong Hu, and Gyeong Hun Baeg. 2017. “Epigenetic Modulations in Nanoparticle-Mediated Toxicity.” Food and Chemical Toxicology 109(Pt 1): 746–752. doi:10.1016/j.fct.2017.07.006.
  • Xu, Guoxing, Jin Wang, Yixin Jia, Feng Shen, Wensheng Han, and Yifan Kang. 2014. “MiR-142-3p Functions as a Potential Tumor Suppressor in Human Osteosarcoma by Targeting HMGA1.” Cellular Physiology and Biochemistry 33(5): 1329–1339. doi:10.1159/000358700.
  • Yu, Feng, Katherine A. Pillman, Corine T. Neilsen, John Toubia, David M. Lawrence, Anna Tsykin, Michael P. Gantier, David F. Callen, Gregory J. Goodall, and Cameron P. Bracken. 2017. “Naturally Existing Isoforms of MiR-222 Have Distinct Functions.” Nucleic Acids Research 45(19): 11371–11385. doi:10.1093/nar/gkx788.
  • Zhao, Yong, Lan Li, Ling-Jiang Min, Lian-Qin Zhu, Qing-Yuan Sun, Hong-Fu Zhang, Xin-Qi Liu, Wei-Dong Zhang, Wei Ge, Jun-Jie Wang, et al. 2016. “Regulation of MicroRNAs, and the Correlations of MicroRNAs and Their Targeted Genes by Zinc Oxide Nanoparticles in Ovarian Granulosa Cells.” PLoS One 11(5): e0155865. doi:10.1371/journal.pone.0155865.

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