Phylogenetic and geographic variation of northern Australian sympatric lineages of Treptopale homalos and T. paromolos (Annelida: Phyllodocida: Chrysopetalidae) using mitochondrial and nuclear sequences

References

• Audzijonyte , A , Ovcarenko , I , Bastrop , R and Väinölä , R. 2008 . Two cryptic species of the Hediste diversiclour group (Polychaeta, Nereididae) in the Baltic Sea, with mitochondrial signatures of different population histories . Marine Biology , 155 : 599 – 612 . doi: 10.1007/s00227-008-1055-3
   Web of Science ®Google Scholar
• Bely , AE and Wray , GA. 2004 . Molecular phylogeny of naidid worms (Annelida: Clitellata) based on cytochrome oxidase I . Molecular Phylogenetics and Evolution , 30 : 50 – 63 . doi: 10.1016/S1055-7903(03)00180-5
   PubMed Web of Science ®Google Scholar
• Capa , M , Bybee , D and Bybee , S. 2010 . Integrative taxonomy reveals cryptic species within Sabellastarte Krøyer, 1856 (Sabellidae: Annelida) and establishes the systematics of the genus . Organisms Diversity and Evolution , 10 : 351 – 71 . doi: 10.1007/s13127-010-0033-z
   Google Scholar
• Colgan , DJ , Ponder , WF and Eggler , PE. 2000 . Gastropod evolutionary rates and phylogenetic relationships assessed using partial 28S rDNA and histone H3 sequences . Zoologica Scripta , 29 : 29 – 63 . doi: 10.1046/j.1463-6409.2000.00021.x
   Web of Science ®Google Scholar
• Dahlgren , TG , Åkesson , B , Schander , C , Halanych , KM and Sundberg , P. 2001 . Molecular phylogeny of the model annelid Ophryotrocha . The Biological Bulletin , 201 : 193 – 203 . doi: 10.2307/1543334
   PubMed Web of Science ®Google Scholar
• Dahlgren , TG , Glover , AG , Baco , A and Smith , CR. 2004 . Fauna of whale falls: Systematics and ecology of a new polychaete (Annelida: Chrysopetalidae) from the deep Pacific Ocean . Deep-Sea Research I , 51 : 1873 – 87 . doi: 10.1016/j.dsr.2004.07.017
   Web of Science ®Google Scholar
• Folmer , O , Black , M , Hoeh , W , Lutz , R and Vrijenhoek , R. 1994 . DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates . Molecular Marine Biology and Biotechnology , 3 : 294 – 99 .
   PubMedGoogle Scholar
• Guindon , S and Gascuel , O. 2003 . A simple, fast and accurate method to estimate large phylogenies by maximum-likelihood . Systematic Biology , 52 : 696 – 704 . doi: 10.1080/10635150390235520
   PubMed Web of Science ®Google Scholar
• Halt , MN , Kupriyanova , EK , Cooper , JB and Rouse , GW. 2009 . Naming species with no morphological indicators: Species status of Galeolaria caespitosa (Annelida: Serpulidae) inferrred from nuclear and mitochondrial gene sequences and morphology . Invertebrate Systematics , 23 : 205 – 22 . doi: 10.1071/IS09003
   Web of Science ®Google Scholar
• Hedrick , PW. 2000 . Genetics of Populations, , 2nd edn , 553 Boston : Jones and Bartlett .
   Google Scholar
• Huang , D , Fitzhugh , K and Rouse , GW. 2011a . Inference of phylogenetic relationships within Fabriciidae (Sabellida, Annelida) using molecular and morphological data . Cladistics , 27 : 356 – 79 . doi: 10.1111/j.1096-0031.2010.00343.x
   PubMed Web of Science ®Google Scholar
• Huang , D , Licuanan , WY , Baird , AH and Fukami , H. 2011b . Cleaning up the ‘Bigmessidae’: Molecular phylogeny of scleractinian corals from Faviidae, Merulinidae, Pectiniidae and Trachyphylliidae . BMC Evolutionary Biology , 11 : 37 doi: 10.1186/1471-2148-11-37
   PubMed Web of Science ®Google Scholar
• Hudson , RR and Turelli , M. 2003 . Stochasticity overrules the ‘Three-Times Rule’: Genetic drift, genetic draft, and coalescence time for nuclear loci versus mitochondrial DNA . Evolution , 57 : 182 – 90 .
   PubMed Web of Science ®Google Scholar
• Maddison DR , Maddison WP. 2005 . MacClade version 4.08: Analysis of phylogeny and character evolution . Sunderland : Sinauer Associates . Computer program .
   Google Scholar
• Nygren , A , Eklof , J and Pleijel , F. 2009 . Arctic-boreal sibling species of Paranaitis (Polychaeta, Phyllodocidae) . Marine Biology Research , 5 : 315 – 27 . doi: 10.1080/17451000802441301
   Web of Science ®Google Scholar
• Nygren , A and Pleijel , F. 2011 . From one to ten in a single stroke – Resolving the European Eumida sanguinea (Phyllodocidae, Annelida) species complex . Molecular Phylogenetics and Evolution , 58 : 132 – 41 . doi: 10.1016/j.ympev.2010.10.010
   PubMed Web of Science ®Google Scholar
• Palumbi , SR and Cipriano , F. 1998 . Species identification using genetic tools: The value of nuclear and mitochondrial gene sequences in whale conservation . Journal of Heredity , 89 : 459 – 64 . doi: 10.1093/jhered/89.5.459
   PubMed Web of Science ®Google Scholar
• Palumbi , SR , Cipriano , F and Hare , MP. 2001 . Predicting nuclear gene coalescence from mitochondrial data: The three-times rule . Evolution , 55 : 859 – 68 . doi: 10.1554/0014-3820(2001)055[0859:PNGCFM]2.0.CO;2
   PubMed Web of Science ®Google Scholar
• Posada , D. 2003 . “ Using Modeltest and PAUP* to select a model of nucleotide substitution ” . In Current Protocols in Bioinformatics , Edited by: Baxevanis , AD , Davison , DB , Page , RDM , Petsko , GA , Stein , LD and Stormo , GD . 6.5.1 – 14 . New York : John Wiley & Sons .
   Google Scholar
• Posada , D. 2008 . jModeltest: Phylogenetic model averaging . Molecular Biology and Evolution , 25 : 1253 – 56 . doi: 10.1093/molbev/msn083
   PubMed Web of Science ®Google Scholar
• Ronquist , F and Huelsenbeck , JP. 2003 . MrBayes 3: Bayesian phylogenetic inference under mixed models . Bioinformatics , 19 : 1572 – 74 . doi: 10.1093/bioinformatics/btg180
   PubMed Web of Science ®Google Scholar
• Swofford DL. 2003 . PAUP*. Phylogenetic analysis using parsimony (* and other methods), Version 4 . Sunderland : Sinauer Associates . Computer program .
   Google Scholar
• Syms C , Kingsford MJ. 2008 . Coral reef habitats and assemblages . In : The Great Barrier Reef: Biology, Environment and Management . Collingwood : CSIRO Publishing , p 40 – 50 .
   Google Scholar
• Tavare , S. 1986 . “ Some probabilistic and statistical problems in the analysis of DNA sequences ” . In DNA Sequence Analysis , Edited by: Miura , RM, . 57 – 86 . Providence : American Mathematical Society .
   Google Scholar
• Vrijenhoek , RC , Johnson , SB and Rouse , GW. 2009 . A remarkable diversity of bone-eating worms (Osedax; Siboglinidae; Annelida) . BMC Biology , 7 : 74 – 86 . doi: 10.1186/1741-7007-7-74
   PubMed Web of Science ®Google Scholar
• Watson , C. 2010 . Revision of the pantropical genus Treptopale (Annelida: Phyllodocida: Chrysopetalidae): redescription of Treptopale rudolphi Perkins, 1985 and description of two new species including comparison of Treptopale populations in northern Australia . The Beagle, Records of the Museum and Art Galleries of the Northern Territory , 26 : 37 – 55 .
   Google Scholar
• Watson Russell , C. 1986 . Paleaequor, a new genus of polychaete worm (Chrysopetalidae) . Records of the Australian Museum , 38 : 153 – 74 . doi: 10.3853/j.0067-1975.38.1986.180
   Google Scholar
• Watson Russell , C. 2000a . Description of a new species of Arichlidon (Chrysopetalidae; Polychaeta) from the West Atlantic and comparison with the East Atlantic species Arichlidon reyssi . Bulletin of Marine Science , 67 : 465 – 77 .
   Web of Science ®Google Scholar
• Watson Russell , C. 2000b . “ Family Chrysopetalidae ” . In Polychaetes and Allies: The Southern Synthesis , Edited by: Beesley , PL , Ross , GB and Glasby , CJ . 121 – 25 . Melbourne : CSIRO Publishing .
   Google Scholar
• Wells , FE and Allen , GR. 2005 . Marine biodiversity on off-shore coral reefs in north-western Australia . The Beagle, Supplement , 1 : 43 – 50 .
   Google Scholar
• Westheide , W and Hass-Cordes , E. 2001 . Molecular taxonomy: Description of a crytic Petitia species (Polychaeta: Syllidae) from the island of Mahé (Seychelles, Indian Ocean) using RAPD markers and ITS2 sequences . Journal of Zoological Systematics and Evolutionary Research , 39 : 103 – 11 . doi: 10.1046/j.1439-0469.2001.00166.x
   Web of Science ®Google Scholar
• Wiklund , H , Glover , AG and Dahlgren , TG. 2009a . Three new species of Ophryotrocha (Annelida: Dorvilleidae) from a whale-fall in the North-East Atlantic . Zootaxa , 2228 : 43 – 56 .
   Google Scholar
• Wiklund , H , Glover , AG , Johannessen , PJ and Dahlgren , TG. 2009b . Cryptic speciation at organic-rich marine habitats: a new bacteriovore annelid from whale-fall and fish farms in the North-East Atlantic . Zoological Journal of the Linnean Society , 155 : 774 – 85 . doi: 10.1111/j.1096-3642.2008.00469.x
   Web of Science ®Google Scholar
• Wolstenholme , J , Dinesen , ZD and Alderslade , P. 1997 . “ Hard corals of the Darwin region, Northern Territory Australia ” . In Proceedings of the Sixth International marine Biological Workshop. The Marine Flora and Fauna of Darwin Harbour, Northern Territory Australia , Edited by: Hanley , JR , Caswell , G , Megirian , D and Larson , HK . 381 – 98 . Darwin : Museums and Art Galleries of the Northern Territory and the Australian Marine Sciences Association .
   Google Scholar