143
Views
7
CrossRef citations to date
0
Altmetric
ORIGINAL ARTICLES

The impact of Yangtze River discharge on the genetic structure of a population of the rock bream, Oplegnathus fasciatus

, , , , , , , & show all
Pages 426-434 | Received 15 Jun 2015, Accepted 29 Jan 2016, Published online: 11 May 2016

References

  • An HS, Kim MJ, Hong SW. 2008. Genetic diversity of rock bream Oplegnathus fasciatus in southern Korea. Genes & Genomics 30:451–59.
  • Avise JC. 1998. The history and preview of phylogeography: a personal reflection. Molecular Ecology 7:371–79. doi:10.1046/j.1365-294x.1998.00391.x
  • Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K. 1995. Short Protocols in Molecular Biology. New York: John Wiley & Sons. 836 pages.
  • Beardsley RC, Limeburner R, Yu H, Cannon GA. 1985. Discharge of the Changjiang (Yangtze River) into the East China Sea. Continental Shelf Research 4:57–76. doi:10.1016/0278-4343(85)90022-6
  • Cheang CC, Chu KH, Ang Jr PO. 2010. Phylogeography of the marine macroalga Sargassum hemiphyllum (Phaeophyceae, Heterokontophyta) in northwestern Pacific. Molecular Ecology 19:2933–48. doi:10.1111/j.1365-294X.2010.04685.x
  • Cornuet JM, Luikart G. 1996. Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144: 2001–14.
  • Dong YW, Wang HS, Han GD, Ke CH, Zhang X, Nakano T, Williams GA. 2012. The impact of Yangtze River discharge, ocean currents and historical events on the biogeographic pattern of Cellana toreuma along the China coast. PLoS One 7:e36178. 10 pages. doi:10.1371/journal.pone.0036178
  • Dynesius M, Jansson R. 2000. Evolutionary consequences of changes in species’ geographical distributions driven by Milankovitch climate oscillations. Proceedings of the National Academy of Sciences 97:9115–20. doi:10.1073/pnas.97.16.9115
  • Excoffier L, Lischer HEL. 2010. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources 10:564–67. doi:10.1111/j.1755-0998.2010.02847.x
  • Excoffier L, Smouse PE, Quattro JM. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479–91.
  • Falk DA, Holsinger KE. 1991. Genetics and Conservation of Rare Plants. New York: Oxford University Press. 304 pages.
  • Fang JJ, Li YT, Sun SH, Deng JY. 2011. Analysis of runoff change characteristics at Datong station of Yangtze River. Water Resources and Power 29:9–12.
  • Glenn TC, Stephan W, Braun MJ. 1999. Effects of a population bottleneck on whooping crane mitochondrial DNA variation. Conservation Biology 13:1097–107. doi:10.1046/j.1523-1739.1999.97527.x
  • Goldstein D, Ruiz-Linares A, Feldmann M, Cavalli-Sforza L. 1995. Genetic absolute dating based on microsatellites and the origin of modern humans. Proceedings of the National Academy of Sciences 92:6723–27. doi:10.1073/pnas.92.15.6723
  • Hartl DL, Clark AG. 1997. Principles of Population Genetics. Sunderland, MA: Sinauer Associates, p 95–113.
  • Hewitt GM. 2000. The genetic legacy of the quaternary ice ages. Nature 405:907–13. doi:10.1038/35016000
  • Hu Z, Uwai S, Yu S, Komatsu T, Ajisaka T, Duan D. 2011. Phylogeographic heterogeneity of the brown macroalga Sargassum horneri (Fucaceae) in the northwestern Pacific in relation to late Pleistocene glaciation and tectonic configurations. Molecular Ecology 20:3894–909. doi:10.1111/j.1365-294X.2011.05220.x
  • Hu Z, Zhang J, Lopez-Bautista J, Duan D. 2013. Asymmetric genetic exchange in the brown seaweed Sargassum fusiforme (Phaeophyceae) driven by oceanic currents. Marine Biology 160:1407–14. doi:10.1007/s00227-013-2192-x
  • Imbrie J, Boyle EA, Clemens SC, DuVy A, Howard WR, Kukla G, et al. 1992. On the structure and origin of major glaciation cycles, 1. Linear responses to Milankovitch forcing. Paleoceanography 7:701–38. doi:10.1029/92PA02253
  • Jia JT, Zheng HB, Huang XT, Wu FY, Yang SY, Wang K, He MY. 2010. Detrital zircon U-Pb ages of late Cenozoic sediments from the Yangtze delta: Implication for the evolution of the Yangtze River. Chinese Science Bulletin 55:1520–28. doi:10.1007/s11434-010-3091-x
  • Jiang CB, Zhang LJ, Wang F. 2006. A study of pCO2 in the surface water of the southern Yellow Sea in summer II: the respective contribution of the upwelling and the Yangtze River diluted water to the air-sea of CO2 flux. Periodical of Ocean University of China 36:147–52.
  • Kim J, Kim W, Oh M. 2014. Development of fifteen novel microsatellite markers from rock bream (Oplegnathus fasciatus). Open Journal of Genetics 4:287–91. doi:10.4236/ojgen.2014.44026
  • Lambeck K, Esat TM, Potter EK. 2002. Links between climate and sea levels for the past three million years. Nature 419:199–206. doi:10.1038/nature01089
  • Lewontin RC. 1972. The apportionment of human diversity. Evolutionary Biology 6: 391–98.
  • Li SL, Xu DD, Lou B, Wang WD, Xin J, Mao GM, Zhan W. 2012. The genetic diversity of wild and hatchery-released Oplegnathus fasciatus from inshore water of Zhoushan revealed by AFLP. Marine Science 36:21–27.
  • Lin J, Zhu JR, Zhang J, Wu H, Luo WJ. 2011. Distribution of phytoplankton biomass and its relationships with the environmental factors off the Changjiang (Yangtze River) Estuary. Journal of Fishery Sciences of China 35:74–87.
  • Liu JX, Gao TX, Wu SF, Zhang YP. 2007. Pleistocene isolation in the Northwestern Pacific marginal seas and limited dispersal in a marine fish, Chelon haematocheilus (Temminck & Schlegel, 1845). Molecular Ecology 16:275–88. doi: 10.1111/j.1365-294X.2006.03140.x
  • Miller MP. 1997. Tools for Population Genetic Analyses (TFPGA). A Windows program for the analysis of allozyme and molecular population genetic data, version 1.3. Flagstaff, AZ: Department of Biological Sciences, Northern Arizona University, p 11–22.
  • Nei M. 1973. Analysis of gene diversity in subdivided populations. Proceedings of the National Academy of Sciences 70:3321–23. doi:10.1073/pnas.70.12.3321
  • Nei M. 1987. Molecular Evolutionary Genetics. New York: Columbia University Press. 512 pages.
  • Niu R, Huang ZB, Shang HT, Wei H, Wang AD. 2002. Analysis of DNA polymorphism of 21 microsatellite loci from Bama miniature pig breed in Guangxi of China. Chinese Journal of Veterinary Science and Technology 32:11–13.
  • Peakall R, Smouse PE. 2012. GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research–an update. Bioinformatics 28:2537–39. doi:10.1093/bioinformatics/bts460
  • Pritchard JK, Stephens M, Donnelly P. 2000. Inference of population structure using multilocus genotype data. Genetics 155:945–59.
  • Raymond M, Rousset F. 1995. GENEPOP (Version1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity 86:248–49.
  • Reynolds JB, Weir S, Cockerham CC. 1983. Estimation of the coancestry coefficient: basis for a short-term genetic distance. Genetics 105:767–69.
  • Rice WR. 1989. Analyzing tables of statistical tests. Evolution 43:223–25. doi:10.2307/2409177
  • Seeb LW, Seeb JE, Polovina JJ. 1990. Genetic variation in highly exploited spiny lobster Panulirus marginatus populations from the Hawaiian Archipelago. Fishery Bulletin 88:713–18.
  • Shimoda N, Knapik E, Ziniti J, Sim C, Yamada E, Kaplan S, et al. 1999. Zebrafish genetic map with 2000 microsatellite markers. Genomics 58:219–32. doi:10.1006/geno.1999.5824
  • Sokal RR, Michener CD. 1958. A statistical method for evaluating systematic relationships. University of Kansas Science Bulletin 38:1409–38.
  • Spielman D, Brook BW, Frankham R. 2004. Most species are not driven to extinction before genetic factors impact them. Proceedings of the National Academy of Sciences 101:15261–64. doi:10.1073/pnas.0403809101
  • Sun P, Li J, Yi F, Pen SM, Liu MH, Shi ZH. 2011. Genetic variation of mitochondrial control region sequences in cultured Oplegnathus fasciatus. Marine Fisheries 33:9–14.
  • Waples RS. 1998. Separating the wheat from the chaff: patterns of genetic differentiation in high gene flow species. Journal of Heredity 89:438–50. doi:10.1093/jhered/89.5.438
  • Wu ZY, Chen HX, Liu N. 2010. Relationship between East China Sea Kuroshio and climatic elements in East China. Marine Science Bulletin 12:1–9.
  • Xiao YS, Li J, Ren GJ, Ma DY, Wang YF, Xiao ZZ, Xu SH. 2015. Pronounced population genetic differentiation in the rock bream Oplegnathus fasciatus inferred from mitochondrial DNA sequences. Mitochondrial DNA 27(3):2045–52. doi:10.3109/19401736.2014.982553
  • Xiao ZZ, Xiao YS, Ren GJ, Gao TX, Tu DZ, Han ZQ, et al. 2013. Comparative analysis on the genetic variation of cultured and wild rock bream Oplegnathus fasciatus population based on mtDNA control region. Oceanologia et Limnologia Sinica 44:249–54.
  • Xu YJ, Liu XZ, Wang YY, Qu JZ. 2009. Effects of temperature and salinity on embryonic development and starving tolerance of newly hatched larvae of rock bream Oplegnathus fasciatus. Progress in Fishery Science 30(3):26–31.
  • Zhao YM, Li Q, Kong LF, Mao YZ. 2009. Genetic and morphological variation in the Venus clam Cyclina sinensis along the coast of China. Hydrobiologia 635:227–35. doi:10.1007/s10750-009-9916-4
  • Zheng HB, Clift PD, Wang P, Tada R, Jia JT, He MY, Jourdan F. 2013. Pre-Miocene birth of the Yangtze River. Proceedings of the National Academy of Sciences 110:7556–61. doi:10.1073/pnas.1216241110

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.