279
Views
7
CrossRef citations to date
0
Altmetric
ORIGINAL ARTICLES

A divergent lineage among Octopus minor (Sasaki, 1920) populations in the Northwest Pacific supported by DNA barcoding

, &
Pages 335-344 | Received 07 Apr 2017, Accepted 20 Dec 2017, Published online: 06 Mar 2018

References

  • Allcock AL, Lindgren A, Strugnell JM. 2015. The contribution of molecular data to our understanding of cephalopod evolution and systematics: a review. Journal of Natural History 49:1373–1421. doi: 10.1080/00222933.2013.825342
  • Balloux F, Lehmann L. 2003. Random mating with a finite number of matings. Genetics 165:2313–2315.
  • Bandelt HJ, Forster P, Rohl A. 1999. Median-joining networks for inferring intraspecific phylogenies. Molecular Biology and Evolution 16:37–48. doi: 10.1093/oxfordjournals.molbev.a026036
  • Barco A, Raupach MJ, Laakmann S, Neumann H, Knebelsberger T. 2016. Identification of North Sea molluscs with DNA barcoding. Molecular Ecology Resources 16(1):288–297. doi: 10.1111/1755-0998.12440
  • Bo QK, Zheng XD, Gao XL, Li Q. 2016. Multiple paternity in the common long-armed octopus Octopus minor (Sasaki, 1920) (Cephalopoda: Octopoda) as revealed by microsatellite DNA analysis. Marine Ecology 37(5):1073–1078. doi: 10.1111/maec.12364
  • Dong ZZ. 1988. Fauna Sinica: Phylum Mollusca (Class Cephalopoda). Beijing: Science Press. 212 pages. (in Chinese)
  • Dong ZJ, Liu Z, Liu DY, Liu QQ, Sun TT. 2016. Low genetic diversity and lack of genetic structure in the giant jellyfish Nemopilema nomurai in Chinese coastal waters. Marine Biology Research 12(7):769–775. doi: 10.1080/17451000.2016.1196818
  • Excoffier L, Lischer HEL. 2010. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources 10:564–567. doi: 10.1111/j.1755-0998.2010.02847.x
  • Fadhlaoui-Zid K, Knittweis L, Aurelle D, Nafkha C, Ezzeddine S, Fiorentino F, Ghmati H, Ceriola L, Jarboui O, Maltagliati F. 2012. Genetic structure of Octopus vulgaris (Cephalopoda, Octopodidae) in the central Mediterranean Sea inferred from the mitochondrial COIII gene. Comptes Rendus Biologies 335(10–11):625–636. doi: 10.1016/j.crvi.2012.10.004
  • Folmer O, Black MB, Hoeh W, Lutz R, Vrijenhoek RC. 1994. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology 3:294–299.
  • Fu YX. 1997. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics. 147:915–925.
  • Gao XL, Zheng XD, Bo QK, Li Q. 2016. Population genetics of the common long-armed octopus Octopus minor (Sasaki, 1920) (Cephalopoda: Octopoda) in Chinese waters based on microsatellite analysis. Biochemical Systematics and Ecology 66:129–136. doi: 10.1016/j.bse.2016.03.014
  • Hamasaki K, Iizuka C, Sanda T, Imai H, Kitada S. 2017. Phylogeny and phylogeography of the land hermit crab Coenobita purpureus (Decapoda: Anomura: Coenobitidae) in the Northwestern Pacific region. Marine Ecology 38(1):1–17. doi: 10.1111/maec.12369
  • Harpending HC. 1994. Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution. Human Biology 66:591–600.
  • Huelsenbeck JP, Ronquist F. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:754–755. doi: 10.1093/bioinformatics/17.8.754
  • Kaneko N, Kubodera T, Iguchis A. 2011. Taxonomic study of shallow-water octopuses (Cephalopoda: Octopodidae) in Japan and adjacent waters using mitochondrial genes with perspectives on octopus DNA barcoding. Malacologia 54(1–2):97–108. doi: 10.4002/040.054.0102
  • Kang JH, Park JY, Choi TJ. 2012. Genetic differentiation of octopuses from different habitats near the Korean Peninsula and eastern China based on analysis of the mDNA cytochrome C oxidase 1 gene. Genetics and Molecular Research 11(4):3988–3997. doi: 10.4238/2012.November.21.2
  • Kim DH, An HC, Lee KH, Hwang JW. 2008. Optimal economic fishing efforts in Korean common octopus Octopus minor trap fishery. Fisheries Science 74:1215–1221. doi: 10.1111/j.1444-2906.2008.01645.x
  • Lande R, Shannon S. 1996. The role of genetic variation in adaptation and population persistence in a changing environment. Evolution 50:434–437. doi:10.2307/2410812
  • Leigh JW, Bryant D, Nakagawa S. 2015. Popart: full-feature software for haplotype network construction. Methods in Ecology and Evolution 6:1110–1116. doi: 10.1111/2041-210X.12410
  • Li JJ, Ye YY, Wu CW, Guo BY, Gul Y. 2014. Genetic diversity and population structure of Sepiella japonica (Mollusca: Cephalopoda: Decapoda) inferred by mitochondrial DNA (COI) variations. Biochemical Systematics and Ecology 56:8–15. doi: 10.1016/j.bse.2014.04.011
  • Librado P, Rozas J. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:1451–1452. doi: 10.1093/bioinformatics/btp187
  • Liu JX, Gao TX, Wu SF, Zhang YP. 2007. Pleistocene isolation in the Northwestern Pacific marginal seas and limited dispersal in a marine fish, Chelon haematocheilus (Temminck & Schlegel, 1845). Molecular Ecology 16:275–288. doi: 10.1111/j.1365-294X.2006.03140.x
  • Liu SYV, Huang IH, Liu MY, Lin HD, Wang FY, Liao TY. 2015. Genetic stock structure of Terapon jarbua in Taiwanese waters. Marine and Coastal Fisheries 7:464–473. doi: 10.1080/19425120.2015.1074966
  • Lü ZM, Liu LQ, Li H, Wu CW, Zhang JS. 2013. Deep phylogeographic break among Octopus variabilis populations in China: evidence from mitochondrial and nuclear DNA analyses. Biochemical Systematics and Ecology 51:224–231. doi: 10.1016/j.bse.2013.09.003
  • Narum SR. 2006. Beyond Bonferroni: less conservative analyses for conservation genetics. Conservation Genetics 7:783–787. doi:10.1007/s10592-006-9189-7
  • Neethling M, Matthee CA, Bowie RCK, Von der Heyden S. 2008. Evidence for panmixia despite barriers to gene flow in the southern African endemic, Caffrogobius caffer (Teleostei: Gobiidae). BMC Evolutionary Biology 8:325. doi: 10.1186/1471-2148-8-325
  • Nei M, Li WH. 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proceeding of the National Academy Sciences USA 76:5269–5273. doi: 10.1073/pnas.76.10.5269
  • Ni G, Li Q, Kong LF, Yu H. 2014. Comparative phylogeography in marginal seas of the northwestern Pacific. Molecular Ecology 23(3):534–548. doi: 10.1111/mec.12620
  • Ni G, Li Q, Kong LF, Zheng XD. 2012. Phylogeography of bivalve Cyclina sinensis: testing the historical glaciations and Changjiang river outflow hypotheses in Northwestern Pacific. PLoS One 7(11):e49487. 12 pages. doi: 10.1371/journal.pone.0049487
  • Nikula R, Fraser CI, Spencer HG, Waters JM. 2010. Circumpolar dispersal by rafting in two subantarctic kelp-dwelling crustaceans. Marine Ecology Progress Series. 405:221–230. doi: 10.3354/meps08523
  • Pearse DE, Anderson EC. 2009. Multiple paternity increases effective population size. Molecular Ecology 18:3124–3127. doi: 10.1111/j.1365-294X.2009.04268.x
  • Pinxian W, Xiangjun S. 1994. Last glacial maximum in China: comparison between land and sea. Catena 23:341–353. doi: 10.1016/0341-8162(94)90077-9
  • Posada D. 2008. Jmodeltest: phylogenetic model averaging. Molecular Biology and Evolution 25:1253–1256. doi: 10.1093/molbev/msn083
  • Rambaut A, Drummond A. 2008. FigTree: tree figure drawing tool, version 1.2. 2. Institute of Evolutionary Biology, University of Edinburgh. Available from: http://tree.bio.ed.ac.uk/software/figtree/.
  • Rato C, Carranza S, Harris DJ. 2011. When selection deceives phylogeographic interpretation: the case of the Mediterranean house gecko, Hemidactylus turcicus (Linnaeus, 1758). Molecular Phylogenetics and Evolution 58:365–373. doi: 10.1016/j.ympev.2010.12.004
  • Rodriguez FJ, Oliver JL, Marin A, Medina JR. 1990. The general stochastic model of nucleotide substitution. Journal of Theoretical Biology 142(4):485–501. doi: 10.1016/S0022-5193(05)80104-3
  • Strugnell JM, Nishiguchi MK. 2007. Molecular phylogeny of coleoid cephalopods (Mollusca: Cephalopoda) inferred from three mitochondrial and six nuclear loci: a comparison of alignment, implied alignment and analysis methods. Journal of Molluscan Studies 73:399–410. doi: 10.1093/mollus/eym038
  • Su JL, Yuan YL. 2005. Coastal Hydrology of China. Beijing: Ocean Press. 367 pages. (in Chinese)
  • Swindell S. 1996. Sequence Data Analysis Guidebook. New York: Humana Press.
  • Takumiya M, Kobayashi M, Tsuneki K, Furuya H. 2005. Phylogenetic relationships among major species of Japanese coleoid cephalopods (Mollusca: Cephalopoda) using three mitochondrial DNA sequences. Zoological Science 22(2):147–155. doi: 10.2108/zsj.22.147
  • Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. 2013. MEGA6: molecular evolutionary genetics analysis version 6.0. Molecular Biology and Evolution 30:2725–2729. doi: 10.1093/molbev/mst197
  • Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL w: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research. 22:4673–4680. doi: 10.1093/nar/22.22.4673
  • Wang CH, Li SF, Fu CZ, Gong XL, Huang L, Song X, et al. 2009. Molecular genetic structure and evolution in native and colonized populations of the Chinese mitten crab, Eriocheir sinensis. Biological Invasions 11(2):389–399. doi: 10.1007/s10530-008-9256-8
  • Wilson NG, Schrödl M, Halanych KM. 2009. Ocean barriers and glaciation: evidence for explosive radiation of mitochondrial lineages in the Antarctic sea slug Doris kerguelenensis (Mollusca, Nudibranchia). Molecular Ecology 18:965–984. doi: 10.1111/j.1365-294X.2008.04071.x
  • Yang MC, Chen CA, Hsieh HL, Chen CP. 2007. Population subdivision of the tri-spine horseshoe crab, Tachypleus tridentatus, in Taiwan Strait. Zoological Science 24(3):219–224. doi: 10.2108/zsj.24.219
  • Yang X, Ye Q, Xin T, Zou Z, Xia B. 2016. Population genetic structure of Cheyletus malaccensis (Acari: Cheyletidae) in China based on mitochondrial COI and 12S rRNA genes. Experimental and Applied Acarology 69(2):117–128. doi: 10.1007/s10493-016-0028-3
  • Zheng XD, Qian YS, Liu C, Li Q. 2014. Octopus minor. In: Iglesias J, Fuentes L, Villanueva R, editors. Cephalopod Culture. New York: Springer, p 415–426. doi: 10.1007/978-94-017-8648-5
  • Zou SM, Li Q. 2016. Pay attention to the overlooked cryptic diversity in existing barcoding data: the case of mollusca with character-based DNA barcoding. Marine Biotechnology 18(3):327–335. doi: 10.1007/s10126-016-9692-x

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.