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Original articles

Phylogenetic placement and molecular dating of hammerhead sharks (Sphyrnidae) based on whole mitogenomes

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Pages 1-12 | Received 02 Sep 2022, Accepted 17 Mar 2023, Published online: 23 Apr 2023

References

  • Abercrombie DL, Clarke SC, Shivji MS. 2005. Global-scale genetic identification of hammerhead sharks: application to assessment of the international fin trade and law enforcement. Conservation Genetics. 6:775–788. doi:10.1007/s10592-005-9036-2.
  • Alam MT, Petit RA, Read TD, Dove ADM. 2014. The complete mitochondrial genome sequence of the world's largest fish, the whale shark (Rhincodon typus), and its comparison with those of related shark species. Gene. 539:44–49. doi:10.1016/j.gene.2014.01.064.
  • Anisimova M, Gascuel O. 2006. Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative. Systematic Biology. 55:539–552. doi:10.1080/10635150600755453.
  • Aroca AK, Tavera J, Torres Y. 2022. Molecular and morphological evaluation of the Bonnethead Shark Complex Sphyrna Tiburo (carcharhiniformes: Sphyrnidae). Environmental Biology of Fishes. 105:1643–1658. doi:10.1007/s10641-022-01358-x.
  • Avise JC, Arnold J, Ball RM, Bermingham E, Lamb T, Neigel JE, Reeb CA, Saunders NC. 1987. Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics. Annual Review of Ecology and Systematics. 18:489–522. doi:10.1146/annurev.es.18.110187.002421.
  • Barker AM, Adams DH, Driggers WB, Frazier BS, Portnoy DS. 2019. Hybridization between sympatric hammerhead sharks in the western North Atlantic Ocean. Biology Letters. doi:10.1098/rsbl.2019.0004.
  • Barker AM, Frazier BS, Adams DH, Bedore CN, Belcher CN, Driggers WB, Galloway AS, Gelsleichter J, Grubbs RD, Reyier EA, Portnoy DS. 2021. Distribution and relative abundance of scalloped (Sphyrna lewini) and Carolina (S. gilberti) hammerheads in the western North Atlantic Ocean. Fisheries Research. doi:10.1016/j.fishres.2021.106039.
  • Barker AM, Frazier BS, Bethea DM, Gold JR, Portnoy DS. 2017. Identification of young-of-the-year great hammerhead shark Sphyrna mokarran in northern Florida and South Carolina. Journal of Fish Biology. 91:664–668. doi:10.1111/jfb.13356.
  • Baum JK, Myers RA, Kehler DG, Worm B, Harley SJ, Doherty PA. 2003. Collapse and conservation of shark populations in the Northwest Atlantic. Science. 299:389–392. doi:10.1126/science.1079777.
  • Bickford D, Lohman DJ, Sodhi NS, Ng PKL, Meier R, Winker K, Ingram KK, Das I. 2007. Cryptic species as a window on diversity and conservation. Trends in Ecology & Evolution. 22:148–155. doi:10.1016/j.tree.2006.11.004.
  • Bolaño-Martínez N, Bayona-Vasquez NJ, Uribe-Alcocer M, Díaz-Jaimes P. 2016. The mitochondrial genome of the hammerhead Sphyrna zygaena. Mitochondrial DNA. 1–2. doi:10.3109/19401736.2014.982574.
  • Bolaño-Martínez N, Hernández-Muñoz S, Uribe-Alcocer M, Galván-Magaña F, Ritchie PA, García-De León J, Díaz-Jaimes P. 2019. Population genetic divergence as consequence of past range expansions of the smooth hammerhead shark sphyrna zygaena. Hydrobiologia. 837:31–46. doi:10.1007/s10750-019-3957-0.
  • Bornatowski H, Navia AF, Braga RR, Abilhoa V, Corrêa MF. 2014. Ecological importance of sharks and rays in a structural foodweb analysis in southern Brazil. ICES Journal of Marine Science. 71:1586–1592. doi:10.1093/icesjms/fsu025.
  • Bouckaert R, Drummond AJ. 2017. Bmodeltest: Bayesian phylogenetic site model averaging and model comparison. BMC Evolutionary Biology. doi:10.1186/s12862-017-0890-6.
  • Bouckaert R, Vaughan TG, Barido-Sottani J, Duchêne S, Fourment M, Gavryushkina A, Heled J, Jones G, Kühnert D, De Maio N, et al. 2019. BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis. PLoS Computational Biology. doi:10.1371/journal.pcbi.1006650.
  • Bushnell B. 2014. BBMap: a fast, accurate, splite-aware Aligner. In: BBMap: A Fast, Accurate, Splice-Aware Aligner (Conference) | OSTI.GOV. [accessed 2022 Jul 20]. https://www.osti.gov/biblio/1241166-bbmap.
  • Cappetta H, Case GR. 2016. A Selachian fauna from the middle Eocene (Lutetian, Lisbon Formation) of Andalusia, Covington County, Alabama, USA. Palaeontographica Abteilung A. 307:43–103. doi:10.1127/pala/307/2016/43.
  • Cardeñosa D, Fields AT, Babcock EA, Shea SK, Feldheim KA, Chapman DD. 2020. Species composition of the largest shark fin retail-market in Mainland China. Scientific Reports. doi:10.1038/s41598-020-69555-1.
  • Cardeñosa D, Hyde J, Caballero S. 2014. Genetic diversity and population structure of the pelagic thresher shark (Alopias pelagicus) in the Pacific Ocean: evidence for Two evolutionarily significant units. PLoS One. doi:10.1371/journal.pone.0110193.
  • Cardeñosa D, Shea SK, Zhang H, Fischer GA, Simpfendorfer CA, Chapman DD. 2022. Two thirds of species in a global shark fin trade hub are threatened with extinction: conservation potential of international trade regulations for coastal sharks. Conservation Letters. doi:10.1111/conl.12910.
  • Castro JA, Picornell A, Ramon M. 1999. Mitochondrial DNA: A tool for populational genetic studies. International Microbiology. 1:327–332.
  • Chen X, Shen X-J, Arunrugstuchai S, Ai W, Xiang D. 2016. Complete mitochondrial genome of the blacktip reef shark Carcharhinus melanopterus (Carcharhiniformes: Carcharhinidae). Mitochondrial DNA. 27:873–874. doi:10.3109/19401736.2014.919483.
  • Chen X, Xiang D, Xu Y, Shi X. 2015. Complete mitochondrial genome of the scalloped hammerhead Sphyrna lewini (Carcharhiniformes: Sphyrnidae). Mitochondrial DNA. 26:621–622. doi:10.3109/19401736.2013.834432.
  • Cicimurri DJ, Knight JL. 2009. Late oligocene sharks and rays from the chandler bridge formation, dorchester county, South Carolina, USA. Acta Palaeontologica Polonica. 54:627–647. Doi: 10.4202/app.2008.0077.
  • Clarke SC, McAllister MK, Milner-Gulland EJ, Kirkwood GP, Michielsens CG, Agnew DJ, Pikitch EK, Nakano H, Shivji MS. 2006. Global estimates of shark catches using trade records from commercial markets. Ecology Letters. 9:1115–1126. doi:10.1111/j.1461-0248.2006.00968.x.
  • Cortés E. 2000. Life history patterns and correlations in sharks. Reviews in Fisheries Science. 8:299–344. doi:10.1080/10641260008951115.
  • Cowman PF, Bellwood DR. 2013. Vicariance across major marine biogeographic barriers: temporal concordance and the relative intensity of hard versus soft barriers. Proceedings of the Royal Society B: Biological Sciences. doi:10.1098/rspb.2013.1541.
  • Daly-Engel TS, Seraphin KD, Holland KN, Coffey JP, Nance HA, Toonen RJ, Bowen BW. 2012. Global phylogeography with mixed-marker analysis reveals male-mediated dispersal in the endangered scalloped hammerhead shark (Sphyrna lewini). PLoS ONE. doi:10.1371/journal.pone.0029986.
  • Díaz-Jaimes P, Bayona-Vásquez NJ, Adams DH, Uribe-Alcocer M. 2016. Complete mitochondrial DNA genome of bonnethead shark, Sphyrna tiburo, and phylogenetic relationships among main superorders of modern elasmobranchs. Meta Gene. 7:48–55. doi:10.1016/j.mgene.2015.11.005.
  • Díaz-Jaimes P, Bayona-Vásquez NJ, Escatel-Luna E, Uribe-Alcocer M, Pecoraro C, Adams DH, Frazier BS, Glenn TC, Babbucci M. 2021. Population genetic divergence of bonnethead sharks Sphyrna tiburo in the western North Atlantic: implications for conservation. Aquatic Conservation: Marine and Freshwater Ecosystems. 31:83–98. doi:10.1002/aqc.3434.
  • Donath A, Jühling F, Al-Arab M, Bernhart SH, Reinhardt F, Stadler PF, Middendorf M, Bernt M. 2019. Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes. Nucleic Acids Research. 47:10543–10552. doi:10.1093/nar/gkz833.
  • Douglas J, Zhang R, Bouckaert R. 2020. Adaptive dating and fast proposals: revisiting the phylogenetic relaxed clock model. PLoS Computational Biology. doi:10.1101/2020.09.09.289124.
  • Duchêne S, Archer FI, Vilstrup J, Caballero S, Morin PA. 2011. Mitogenome phylogenetics: The impact of using single regions and partitioning schemes on topology, substitution rate and divergence time estimation. PLoS One. doi:10.1371/journal.pone.0027138.
  • Dulvy NK, Fowler SL, Musick JA, Cavanagh RD, Kyne PM, Harrison LR, Carlson JK, Davidson LNK, Fordham SV, Francis MP, et al. 2014. Extinction risk and conservation of the world’s sharks and rays. eLife. doi:10.7554/elife.00590.
  • Dulvy NK, Pacoureau N, Rigby CL, Pollom RA, Jabado RW, Ebert DA, Finucci B, Pollock CM, Cheok J, Derrick DH, et al. 2021. Overfishing drives over one-third of all sharks and rays toward a global extinction crisis. Current Biology. doi:10.1016/j.cub.2021.11.008.
  • Duncan KM, Martin AP, Bowen BW, De Couet HG. 2006. Global phylogeography of the scalloped hammerhead shark (Sphyrna lewini). Molecular Ecology. 15:2239–2251. doi:10.1111/j.1365-294x.2006.02933.x.
  • Elizondo-Sancho M, Rodríguez-Arriatti Y, Albertazzi FJ, Bonilla-Salazar A, Arauz D, Arauz R, Areano E, Avalos-Castillo CG, Brenes O, Chávez EJ, et al. 2022. Population structure and genetic connectivity of the scalloped hammerhead shark (Sphyrna lewini) across nursery grounds from the Eastern Tropical Pacific: Implications for Management and Conservation. doi:10.1101/2022.02.22.481487.
  • Fahmi F, Tibbetts I, Bennett M, Dudgeon C. 2020. Delimiting cryptic species in a shark with a low dispersal capability. Research Square. doi:10.21203/rs.3.rs-130246/v1.
  • Félix-López DG, Bolaño-Martinez N, Díaz-Jaimes P, Oñate-González C, Ramírez-Pérez JS, García-Rodríguez, Corro-Espinosa D, Osuna-Soto JS, Saavedra-Sotelo NC. 2019. Possible female philopatry of the smooth hammerhead shark Sphyrna zygaena revealed by genetic structure patterns. Journal of Fish Biology. 94:671–679. doi:10.1111/jfb.13949.
  • Ferretti F, Worm B, Britten GL, Heithaus MR, Lotze HK. 2010. Patterns and ecosystem consequences of shark declines in the ocean. Ecology Letters. 1055–1071. doi:10.1111/j.1461-0248.2010.01489.x.
  • Feutry P, Kyne PM, Chen X. 2016. The phylogenomic position of the Winghead Shark Eusphyra blochii (Carcharhiniformes, Sphyrnidae) inferred from the mitochondrial genome. Mitochondrial DNA Part B. 1:386–387. doi:10.1080/23802359.2016.1172049.
  • Feutry P, Kyne PM, Pillans RD, Chen X, Marthick JR, Morgan DL, Grewe PM. 2015. Whole mitogenome sequencing refines population structure of the critically endangered sawfish Pristis pristis. Marine Ecology Progress Series. 533:237–244. doi:10.3354/meps11354.
  • Feutry P, Kyne PM, Pillans RD, Chen X, Naylor GJP, Grewe PM. 2014. Mitogenomics of the Speartooth Shark challenges ten years of control region sequencing. BMC Evolutionary Biology. doi:10.1186/s12862-014-0232-x.
  • Fields AT, Feldheim KA, Gelsleichter J, Pfoertner C, Chapman DD. 2016. Population structure and cryptic speciation in Bonnethead Sharks Sphyrna tiburo in the south-eastern U.S.A. and Caribbean. Journal of Fish Biology. 89:2219–2233. doi:10.1111/jfb.13025.
  • Fišer C, Robinson CT, Malard F. 2018. Cryptic species as a window into the paradigm shift of the species concept. Molecular Ecology. 27:613–635. doi:10.1111/mec.14486.
  • Gonzalez C, Gallagher AJ, Caballero S. 2019. Conservation genetics of the bonnethead shark Sphyrna tiburo in Bocas del Toro, Panama: preliminary evidence of a unique stock. PLoS One. doi:10.1371/journal.pone.0220737.
  • Gonzalez C, Postaire B, Domingues RR, Feldheim KA, Caballero S, Chapman D. 2021. Phylogeography and population genetics of the cryptic bonnethead shark Sphyrna aff. tiburo in Brazil and the Carribean inferred from mtDNA markers. Journal of Fish Biology. 99:1899–1911. doi:10.1111/jfb.14896.
  • Green ME, Appleyard SA, White WT, Tracey SR, Heupel MR, Ovenden JR. 2022. Updated connectivity assessment for the Scalloped Hammerhead (Sphyrna lewini) in Pacific and Indian Oceans using a multi-marker genetic approach. Fisheries Research. doi:10.1016/j.fishres.2022.106305.
  • Guy DS, Ruck CL, Lopez JV, Shivji MS. 2017. Complete mitogenome sequences of smooth hammerhead sharks, sphyrna zygaena, from the eastern and Western atlantic. Mitochondrial DNA Part B. 2:806–807. doi:10.1080/23802359.2017.1390421.
  • Hadi S, Andayani N, Muttaqin E, Simeon BM, Ichsan M, Subhan B, Madduppa H. 2020. Genetic connectivity of the scalloped hammerhead shark sphyrna lewini across Indonesia and the western Indian Ocean. PLOS ONE. doi:10.1371/journal.pone.0230763.
  • Hamon N, Sepulchre P, Lefebvre V, Ramstein G. 2013. The role of eastern Tethys seaway closure in the Middle Miocene Climatic Transition (ca. 14 Ma). Climate of the Past. 9:2687–2702. doi:10.5194/cp-9-2687-2013.
  • Hoang DT, Chernomor O, von Haeseler A, Minh BQ, Vinh LS. 2018. UFBoot2: improving the ultrafast bootstrap approximation. Molecular Biology and Evolution. 35:518–522. doi:10.1093/molbev/msx281.
  • Iwasaki W, Fukunaga T, Isagozawa R, Yamada K, Maeda Y, Satoh TP, Mabuchi K, Takeshima H, Miya M, Nishida M. 2013. Mitofish and MitoAnnotator: a mitochondrial genome database of fish with an accurate and automatic annotation pipeline. Molecular Biology and Evolution. 30:2531–2540. doi:10.1093/molbev/mst141.
  • Jin J, Yu W, Yang J, Song Y, de Pamphilis CW, Yi T, Li D. 2020. GetOrganelle: A fast and versatile toolkit for accurate de novo assembly of organelle genomes. doi:10.1101/256479.
  • Kalyaanamoorthy S, Minh BQ, Wong TK, von Haeseler A, Jermiin LS. 2017. Modelfinder: fast model selection for accurate phylogenetic estimates. Nature Methods. 14:587–589. doi:10.1038/nmeth.4285.
  • Keller G, Barron JA. 1983. Paleoceanographic implications of Miocene deep-sea hiatuses. Geological Society of America Bulletin. 94:590. doi:10.1130/0016-7606(1983)94<590:piomdh>2.0.co;2.
  • Kousteni V, Mazzoleni S, Vasileiadou K, Rovatsos M. 2021. Complete mitochondrial DNA genome of nine species of sharks and rays and their phylogenetic placement among modern elasmobranchs. Genes. 12:324. doi:10.3390/genes12030324.
  • Kraft DW, Conklin EE, Barba EW, Hutchinson M, Toonen RJ, Forsman ZH, Bowen BW. 2020. Genomics versus mtDNA for resolving stock structure in the silky shark (Carcharhinus falciformis). PeerJ. doi:10.7717/peerj.10186.
  • Kuguru G, Gennari E, Wintner S, Dicken ML, Klein JD, Rhode C, Bester-van der Merwe AE. 2019. Spatio-temporal genetic variation of juvenile smooth hammerhead sharks in South Africa. Marine Biology Research. 15:568–579. doi:10.1080/17451000.2019.1695058.
  • Lim DD, Motta P, Mara K, Martin AP. 2010. Phylogeny of hammerhead sharks (Family Sphyrnidae) inferred from mitochondrial and nuclear genes. Molecular Phylogenetics and Evolution. 55:572–579. doi:10.1016/j.ympev.2010.01.037.
  • Long DJ, Ebert DA, Tavera J, Acero PA, Robertson DR. 2021. Squatina mapama n. sp., a new cryptic species of angel shark (Elasmobranchii: Squatinidae) from the southwestern Caribbean Sea. Journal of the Ocean Science Foundation. 38:113–130. doi:10.5281/zenodo.5806693.
  • Lopes da Silva Ferrette B, Coelho R, Peddemors VM, Ovenden JR, De Franco BM, Oliveira C, Foresti F, Mendonça FF. 2021. Global phylogeography of the smooth hammerhead shark: glacial refugia and historical migration patterns. Aquatic Conservation: Marine and Freshwater Ecosystems. 31:2348–2368. doi:10.1002/aqc.3629.
  • Marin J, Hedges SB. 2018. Undersampling genomes has biased time and rate estimates throughout the tree of life. Molecular Biology and Evolution. 35:2077–2084. doi:10.1093/molbev/msy103.
  • Minh B, Schmidt H, Chernomor O, Schrempf D, Woodhams M, von Haeseler A, et al. 2020. IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic Era. Molecular Biology and Evolution. 37(5):1530–1534. doi:10.1093/molbev/msaa015.
  • Nance HA, Klimley P, Galván-Magaña F, Martínez-Ortíz J, Marko PB. 2011. Demographic processes underlying subtle patterns of population structure in the scalloped hammerhead shark, Sphyrna lewini. PLoS One. doi:10.1371/journal.pone.0021459.
  • Naylor GJ, Caira JN, Jensen K, Rosana KA, White WT, Last PR. 2012. A DNA sequence–based approach to the identification of shark and Ray species and its implications for global elasmobranch diversity and parasitology. Bulletin of the American Museum of Natural History. 367:1–262. doi:10.1206/754.1.
  • Osgood GJ, White ER, Baum JK. 2021. Effects of climate-change-driven gradual and acute temperature changes on shark and Ray species. Journal of Animal Ecology. 90:2547–2559. doi:10.1111/1365-2656.13560.
  • Pacoureau N, Rigby CL, Kyne PM, Sherley RB, Winker H, Carlson JK, Fordham SV, Barreto R, Fernando D, Francis MP, et al. 2021. Half a century of global decline in oceanic sharks and rays. Nature. 589:567–571. doi:10.1038/s41586-020-03173-9.
  • Pinhal D, Domingues RR, Bruels CC, Ferrette BL, Gadig OB, Shivji MS, Martins C. 2020. Restricted connectivity and population genetic fragility in a globally endangered hammerhead shark. Reviews in Fish Biology and Fisheries. 30:501–517. doi:10.1007/s11160-020-09607-x.
  • Pinhal D, Shivji MS, Vallinoto M, Chapam DD, Gadig OB, Martins C. 2011. Cryptic hammerhead shark lineage occurrence in the western south atlantic revealed by DNA analysis. Marine Biology. 159:829–836. doi:10.1007/s00227-011-1858-5.
  • Quattro JM. 2012. Sphyrna control region, partial sequence; mitochondrial. -popset -NCBI. In: National Center for Biotechnology Information. [accessed 2022 Jul 20]. https://www.ncbi.nlm.nih.gov/popset?DbFrom = nuccore&Cmd = Link&LinkName = nuccore_popset&IdsFromResult = 443298728.
  • Quattro JM, Driggers WB, Grady JM, Ulrich GF, Roberts MA. 2013. Sphyrna gilberti sp. nov., a new hammerhead shark (Carcharhiniformes, Sphyrnidae) from the western Atlantic Ocean. Zootaxa. 3702:159. doi:10.11646/zootaxa.3702.2.5.
  • Quattro JM, Stoner DS, Driggers WB, Anderson CA, Priede KA, Hoppmann EC, Campbell NH, Duncan KM, Grady JM. 2006. Genetic evidence of cryptic speciation within hammerhead sharks (Genus Sphyrna). Marine Biology. 148:1143–1155. doi:10.1007/s00227-005-0151-x.
  • Quintanilla S, Gómez A, Mariño-Ramírez C, Sorzano C, Bessudo S, Soler G, Bernal JE, Caballero S. 2015. Conservation genetics of the scalloped hammerhead shark in the Pacific coast of Colombia. Journal of Heredity. 106:448–458. doi:10.1093/jhered/esv050.
  • Rambaut A. 2008. In: FigTree. [accessed 2022 Jul 21]. http://tree.bio.ed.ac.uk/software/figtree/.
  • Rambaut A, Drummond AJ, Xie D, Baele G, Suchard MA. 2018. Posterior summarization in Bayesian phylogenetics using tracer 1.7. Systematic Biology. 67:901–904. doi:10.1093/sysbio/syy032.
  • Rangel-Morales JM, Rosales-López LP, Díaz-Jaimes P, Amezcua-Martínez F, Ketchum JT, Hoyos-Padilla M, Corgos A. 2022. Regional philopatry of scalloped hammerhead sharks (sphyrna lewini) to nursery areas in the Mexican pacific. Hydrobiologia. 849:3083–3099. doi:10.1007/s10750-022-04880-2.
  • Redding DW, Hartmann K, Mimoto A, Bokal D, De Vos Matt, Mooers AØ. 2008. Evolutionarily distinctive species often capture more phylogenetic diversity than expected. Journal of Theoretical Biology. 251:606–615. doi:10.1016/j.jtbi.2007.12.006.
  • Renema W, Bellwood DR, Braga JC, Bromfield K, Hall R, Johnson KG, Lunt P, Meyer CP, McMonagle LB, Morley RJ, et al. 2008. Hopping hotspots: global shifts in marine biodiversity. Science. 321:654–657. doi:10.1126/science.1155674.
  • Rigby CL, Barreto R, Carlson J, Fernando D, Fordham S, Herman K, Jabado RW, Liu KM, Marshall A, Pacoureau N, et al. 2019a. Sphyrna lewini. In: The IUCN Red List of Threatened Species. [accessed 2022 Jul 20]. https://www.iucnredlist.org/es/species/39385/2918526.
  • Rigby CL, Barreto R, Carlson J, Fernando D, Fordham S, Herman K, Jabado RW, Liu KM, Marshall A, Pacoureau N, et al. 2019a. Sphyrna zygaena. In: The IUCN Red List of Threatened Species. [accessed 2022 Jul 20]. https://doi.org/10.2305/IUCN.UK.2019-3.RLTS.T39388A2921825.en.
  • Roff G, Brown CJ, Priest MA, Mumby PJ. 2018. Decline of coastal apex shark populations over the past half century. Communications Biology. doi:10.1038/s42003-018-0233-1.
  • Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Lui L, Suchard MA, Huelsenbeck JP. 2012. Mrbayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology. 61:539–542. doi:10.1093/sysbio/sys029.
  • Ruck CL, Marra N, Shivji MS, Stanhope MJ. 2017. The complete mitochondrial genome of the endangered great hammerhead shark, Sphyrna mokarran. Mitochondrial DNA Part B. 2:246–248. doi:10.1080/23802359.2017.1318682.
  • Santos CP, Sampaio E, Pereira BP, Pegado MR, Borges FO, Wheeler CR, Bouyoucos IA, Rummer JL, Frazão Santos C, Rosa R. 2021. Elasmobranch responses to experimental warming, acidification, and oxygen loss—a meta-analysis. Frontiers in Marine Science. doi:10.3389/fmars.2021.735377.
  • Sambrook J, Russell DW. 2001. Molecular cloning: a laboratory manual. Cold Spring Harbor: CSHL Press.
  • Shevenell AE, Kennett JP, Lea DW. 2004. Middle miocene Southern Ocean cooling and antarctic cryosphere expansion. Science. 305:1766–1770. doi:10.1126/science.1100061.
  • Steel M, Mimoto A, Mooers AØ. 2007. Hedging our bets: the expected contribution of species to future phylogenetic diversity. Evolutionary Bioinformatics. 3:117693430700300. doi:10.1177/117693430700300024.
  • Stevens JD, Bonfil R, Dulvy NK, Walker PA. 2000. The effects of fishing on sharks, rays, and chimaeras (chondrichthyans), and the implications for marine ecosystems. ICES Journal of Marine Science. 57:476–494. doi:10.1006/jmsc.2000.0724
  • Stöver BC, Müller KF. 2010. Treegraph 2: combining and visualizing evidence from different phylogenetic analyses. BMC Bioinformatics. doi:10.1186/1471-2105-11-7.
  • Struck TH, Feder JL, Bendiksby M, Birkeland S, Cerca J, Gusarov VI, Kistenich S, Larsson K, Liow LH, Nowak MD, et al. 2018. Finding evolutionary processes hidden in cryptic species. Trends in Ecology &amp; Evolution. 33:153–163. doi:10.1016/j.tree.2017.11.007.
  • Subramanian B, Gao S, Lercher MJ, Hu S, Chen W. 2019. Evolview v3: a webserver for visualization, annotation, and management of phylogenetic trees. Nucleic Acids Research. doi:10.1093/nar/gkz357.
  • Van der Wright WJ, Carlson J, Pollom R, Dulvy NK. 2020. Sphyrna gilberti. In: The IUCN Red List of Threatened Species. [accessed 2022 Jul 20]. https://doi.org/10.2305/IUCN.UK.2020-3.RLTS.T152783714A172115852.en.
  • von der Heydt A, Dijkstra HA. 2006. Effect of ocean gateways on the global ocean circulation in the late Oligocene and early Miocene. Paleoceanography. doi:10.1029/2005pa001149.
  • Wang C, Lai T, Ye P, Yan Y, Feutry P, He B, Huang Z, Zhu T, Wang J, Chen X. 2022. Novel duplication remnant in the first complete mitogenome of Hemitriakis Japanica and the unique phylogenetic position of family Triakidae. Gene. 820:146232. doi:10.1016/j.gene.2022.146232.
  • Yang L, Matthes-Rosana KA, Naylor GJP. 2014. Eusphyra blochii mitochondrion, complete genome – nucleotide -NCBI. In National Center for Biotechnology Information. [accessed 2022 Jul 20]. https://www.ncbi.nlm.nih.gov/nuccore/KJ128290.1.
  • Zemlak TS, Ward RD, Connell AD, Holmes BH, Hebert PD. 2009. DNA barcoding reveals overlooked marine fishes. Molecular Ecology Resources. 9:237–242. doi:10.1111/j.1755-0998.2009.02649.x.

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