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Original articles

Population genetics of the hound needlefish Tylosurus crocodilus (Belonidae) indicate high connectivity in Tanzanian coastal waters

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Pages 261-270 | Received 22 Dec 2022, Accepted 02 Jun 2023, Published online: 13 Jul 2023

References

  • Alonzo SH, Mangel M. 2004. The effects of size-selective fisheries on the stock dynamics of and sperm limitation in sex-changing fish. Fishery Bulletin. 102(1):1–13. http://hdl.handle.net/1834/30881.
  • Alves M, Coelho H, Collares-Pereira M, Coelho M. 2001. Mitochondrial DNA variation in the highly endangered cyprinid fish Anaecypris hispanica: importance for conservation. Heredity. 87(4):463–473. doi:10.1046/j.1365-2540.2001.00929.x.
  • Baltazar-Soares M, Biastoch A, Harrod C, Hanel R, Marohn L, Prigge E, Evans D, Bodles K, Behrens E, Böning Claus W, Eizaguirre C. 2014. Recruitment collapse and population structure of the European eel shaped by local ocean current dynamics. Current Biology. 24(1):104–108. doi:10.1016/j.cub.2013.11.031.
  • Bandelt H-J, Forster P, Röhl A. 1999. Median-joining networks for inferring intraspecific phylogenies. Molecular Biology and Evolution. 16(1):37–48. doi:10.1093/oxfordjournals.molbev.a026036.
  • Bazin E, Glémin S, Galtier N. 2006. Population size does not influence mitochondrial genetic diversity in animals. Science. 312(5773):570–572. doi:10.1126/science.1122033.
  • Bett DK, Tole M, Mlewa CM. 2021. Impact of a ring net fishery in the inshore marine waters of Kilifi on the reproductive biology of six pelagic fish species. Western Indian Ocean Journal of Marine Science. 20(1):1–10. doi:10.4314/wiojms.v20i1.1.
  • Bhatt V, Bhargava R. 1973. Studies on eggs and larvae of the garfish, Tylosurus crocodilus (Le Sueur). Indian Journal of Marine Sciences. 2:127–132. http://nopr.niscpr.res.in/handle/123456789/39651.
  • Bianchi G. 1985. Field guide to the commercial marine and brackish-water species of Tanzania. FAO species identification sheets for fishery purposes. Food and Agriculture Organization of the United Nations.
  • Bohonak A. 2002. IBD (isolation by distance): a program for analyses of isolation by distance. Journal of Heredity. 93(2):153–154. doi:10.1093/jhered/93.2.153.
  • Borsa P, Durand J-D, Chen W-J, Hubert N, Muths D, Mou-Tham G, Kulbicki M. 2016. Comparative phylogeography of the western Indian Ocean reef fauna. Acta Oecologica. 72:72–86. doi:10.1016/j.actao.2015.10.009.
  • Breder CM, Rosen DE. 1966. Modes of reproduction in fishes. American Museum of Natural History. In: Natural History Press. Bibliography: p. 679–910.
  • Cadrin SX, Kerr LA, Mariani S. 2014. Stock identification methods: applications in fishery science. Academic Press. doi:10.1016/C2011-0-07625-1.
  • Cervigón F, Cipriani R, Fischer W, Garibaldi L, Hendrickx M, Lemus A, Márquez R, Poutiers J, Robaina G, Rodriguez B. 1992. Fichas FAO de identificacion de especies para los fines pesca. Guìa de campo de las especies comerciales marinas y de aguas salobres de la costa septentrional de Sur Amèrica. Roma (Italia): FAO.
  • Claro R. 1994. Caracteristicas generales de la ictiofauna. In: Claro R, Lindeman KC, Parenti LR, editor. Ecologia de los peces marinos de Cuba. Quintana Roo: Instituto de Oceanologia Academia de Ciencias de Cuba and Centro de Investigaciones de Quintana Roo; p. 55–71.
  • Cole KS. 2010. Reproduction and sexuality in marine fishes: patterns and processes. Berkeley: University of California Press.
  • Dorenbosch M, Pollux BJA, Pustjens AZ, Rajagopal S, Nagelkerken I, van der Velde G, van der Staay SYM. 2006. Population structure of the Dory snapper, Lutjanus fulviflamma, in the western Indian Ocean revealed by means of AFLP fingerprinting. Hydrobiologia. 568(1):43–53. doi:10.1007/s10750-006-0020-8.
  • Excoffier L, Lischer HEL. 2010. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources. 10(3):564–567. doi:10.1111/j.1755-0998.2010.02847.x.
  • Excoffier L, Schneider S. 1999. Why hunter-gatherer populations do not show signs of Pleistocene demographic expansions. Proceedings of the National Academy of Sciences. 96(19):10597–10602. doi:10.1073/pnas.96.19.10597.
  • Excoffier L, Smouse PE, Quattro JM. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics. 131(2):479–491. doi:10.1093/genetics/131.2.479.
  • Fratini S, Ragionieri L, Cannicci S. 2016. Demographic history and reproductive output correlates with intraspecific genetic variation in seven species of Indo-Pacific mangrove crabs. PLoS One. 11(7):e0158582. doi:10.1371/journal.pone.0158582.
  • Froese R, Pauly D. 2022. Fishbase. World Wide Web electronic publication.
  • Fu Y-X. 1997. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics. 147(2):915–925. doi:10.1093/genetics/147.2.915.
  • Gaither MR, Bowen BW, Rocha LA, Briggs JC. 2016. Fishes that rule the world: circumtropical distributions revisited. Fish and Fisheries. 17(3):664–679. doi:10.1111/faf.12136.
  • Grant W, Bowen B. 1998. Shallow population histories in deep evolutionary lineages of marine fishes: insights from sardines and anchovies and lessons for conservation. Journal of Heredity. 89(5):415–426. doi:10.1093/jhered/89.5.415.
  • Hadi S, Andayani N, Muttaqin E, Simeon BM, Ichsan M, Subhan B, Madduppa H. 2020. Genetic connectivity of the scalloped hammerhead shark Sphyrna lewini across Indonesia and the Western Indian Ocean. PLoS One. 15(10):e0230763. doi:10.1371/journal.pone.0230763.
  • Harpending H. 1994. Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution. Human Biology. 66:591–600. https://www.jstor.org/stable/41465371.
  • Holm S. 1979. A simple sequentially rejective multiple test procedure. Scandinavian Journal of Statistics. 6:65–70. https://www.jstor.org/stable/4615733.
  • Huyghe F, Kochzius M. 2017. Highly restricted gene flow between disjunct populations of the skunk clownfish (Amphiprion akallopisos) in the Indian Ocean. Marine Ecology. 38(1):e12357. doi:10.1111/maec.12357.
  • IGFA. 2001. International Game Fish Association. [accessed 2022 Feb 12]. https://www.fishbase.se/references/FBRefSummary.php?ID=40637.
  • Igulu MM, Nagelkerken I, Dorenbosch M, Grol MGG, Harborne AR, Kimirei IA, Mumby PJ, Olds AD, Mgaya YD. 2014. Mangrove habitat use by juvenile reef fish: meta-analysis reveals that tidal regime matters more than biogeographic region. PLoS One. 9(12):e114715. doi:10.1371/journal.pone.0114715.
  • Jahnke M, Gullström M, Larsson J, Asplund ME, Mgeleka S, Silas MO, Hoamby A, Mahafina J, Nordlund LM. 2019. Population genetic structure and connectivity of the seagrass Thalassia hemprichii in the Western Indian Ocean is influenced by predominant ocean currents. Ecology and Evolution. 9(16):8953–8964. doi:10.1002/ece3.5420.
  • Johnson M, Mgaya Y, Shaghude Y. 2021. Analysis of the genetic stock structure and phylogenetic relationship of narrow-barred Spanish mackerel Scomberomorus commerson (Lacépède, 1800) along the northern Tanzanian coastal waters using mitochondrial DNA. Regional Studies in Marine Science. 46:101862. doi:10.1016/j.rsma.2021.101862.
  • Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution. 16(2):111–120. doi:10.1007/BF01731581.
  • Kumar S, Stecher G, Li M, Knyaz C, Tamura K. 2018. MEGA x: molecular evolutionary genetics analysis across computing platforms. Molecular Biology and Evolution. 35(6):1547–1549. doi:10.1093/molbev/msy096.
  • Lage C, Kuhn K, Kornfield I. 2004. Genetic differentiation among Atlantic cod (Gadus morhua) from Browns Bank, Georges Bank, and Nantucket Shoals. Fishery Bulletin. 102(2):289–297.
  • Mantel N. 1967. The detection of disease clustering and a generalized regression approach. Cancer Research. 27(2_Part_1):209–220.
  • McClanahan TR. 1988. Seasonality in East Africa's coastal waters. Marine Ecology Progress Series. 44:191–199.
  • Mwakosya CA, Mgaya YD, Jiddawi NS. 2018. Genetic connectivity of Fenneropenaeus indicus (H. Milne Edwards 1837) among three prawn fishing grounds of Tanzanian coastal waters. Regional Studies in Marine Science. 24:107–112. doi:10.1016/j.rsma.2018.08.001.
  • Nehemia A, Huyghe F, Kochzius M. 2017. Genetic erosion in the snail Littoraria subvittata (Reid, 1986) due to mangrove deforestation. Journal of Molluscan Studies. 83(1):1–10. doi:10.1093/mollus/eyw040.
  • Nehemia A, Kochzius M. 2017. Reduced genetic diversity and alteration of gene flow in a fiddler crab due to mangrove degradation. PLoS One. 12(8):e0182987. doi:10.1371/journal.pone.0182987.
  • Nei M. 1987. Molecular evolutionary genetics. New York: Columbia University Press. doi:10.7312/nei-92038.
  • Obura DO, Bandeira SO, Bodin N, Burgener V, Braulik G, Chassot E, Gullström M, Kochzius M, Nicoll M, Osuka K, et al. 2019. Chapter 4 - the northern Mozambique channel. In: Sheppard C, editor. World seas: an environmental evaluation. 2nd ed. Academic Press; p. 75–99. doi:10.1016/B978-0-08-100853-9.00003-8.
  • Okada N, Sasaki T. 2005. Population genetic analysis of western Indian coelacanths based on mitochondrial DNA. Pioneering Studies on Coelacanth. 435:901.
  • Pinsky ML, Palumbi SR. 2014. Meta-analysis reveals lower genetic diversity in overfished populations. Molecular Ecology. 23(1):29–39. doi:10.1111/mec.12509.
  • Polte P, Asmus H. 2006. Intertidal seagrass beds (Zostera noltii) as spawning grounds for transient fishes in the Wadden Sea. Marine Ecology Progress Series. 312:235–243. doi:10.3354/meps312235.
  • R Core Team. 2019. R: a language and environment for statistical computing. Vienna (Austria): R Foundation for Statistical Computing. www.R-project.org/.
  • Reiss H, Hoarau G, Dickey-Collas M, Wolff WJ. 2009. Genetic population structure of marine fish: mismatch between biological and fisheries management units. Fish and Fisheries. 10(4):361–395. doi:10.1111/j.1467-2979.2008.00324.x.
  • Richmond MD. 2011. A field guide to the seashores of Eastern Africa and the Western Indian Ocean Islands, Dar es Salaam: Sida. WIOMSA. 464 pp.
  • Riede K. 2004. Global register of migratory species: from global to regional scales: final report of the R&D-Projekt 808 05 081. Federal Agency for Nature Conservation.
  • Riginos C, Buckley YM, Blomberg SP, Treml EA. 2014. Dispersal capacity predicts both population genetic structure and species richness in reef fishes. The American Naturalist. 184(1):52–64. doi:10.1086/676505.
  • Rogers AR. 1995. Genetic evidence for a Pleistocene population explosion. Evolution. 49(4):608–615. doi:10.2307/2410314.
  • Rogers AR, Harpending H. 1992. Population growth makes waves in the distribution of pairwise genetic differences. Molecular Biology Evolution. 9(3):552–569. doi:10.1093/oxfordjournals.molbev.a040727.
  • Rumisha C, Huyghe F, Rapanoel D, Mascaux N, Kochzius M. 2017. Genetic diversity and connectivity in the East African giant mud crab Scylla serrata: implications for fisheries management. PLoS One. 12(10):e0186817. doi:10.1371/journal.pone.0186817.
  • Rumisha C, Mdegela RH, Gwakisa PS, Kochzius M. 2018. Genetic diversity and gene flow among the giant mud crabs (Scylla serrata) in anthropogenic-polluted mangroves of mainland Tanzania: implications for conservation. Fisheries Research. 205:96–104. doi:10.1016/j.fishres.2018.04.015.
  • Semba M, Lumpkin R, Kimirei I, Shaghude Y, Nyandwi N. 2019. Seasonal and spatial variation of surface current in the Pemba Channel, Tanzania. PLoS One. 14(1):e0210303. doi:10.1371/journal.pone.0210303.
  • Silas MO. 2022. Patterns of small-scale coastal fisheries and local fisheries management in Tanzania: adaptation to a changing climate. Stockholm: Department of Ecology, Environment and Plant Sciences, Stockholm University.
  • Silva IC, Mesquita N, Paula J. 2010. Genetic and morphological differentiation of the mangrove crab Perisesarma guttatum (Brachyura: Sesarmidae) along an East African latitudinal gradient. Biological Journal of the Linnean Society. 99(1):28–46. doi:10.1111/j.1095-8312.2009.01338.x.
  • Tajima F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics. 123(3):585–595. doi:10.1093/genetics/123.3.585.
  • van der Ven RM, Triest L, De Ryck DJ, Mwaura JM, Mohammed MS, Kochzius M. 2016. Population genetic structure of the stony coral Acropora tenuis shows high but variable connectivity in East Africa. Journal of Biogeography. 43(3):510–519. doi:10.1111/jbi.12643.
  • Van Nieuwenhove AHM, Ratsimbazafy HA, Kochzius M. 2019. Cryptic diversity and limited connectivity in octopuses: recommendations for fisheries management. PLoS One. 14(5):e0214748. doi:10.1371/journal.pone.0214748.
  • Vasilakopoulos P, O'Neill FG, Marshall CT. 2011. Misspent youth: does catching immature fish affect fisheries sustainability? ICES Journal of Marine Science. 68(7):1525–1534. doi:10.1093/icesjms/fsr075.
  • Villesen P. 2007. Fabox: an online toolbox for fasta sequences. Molecular Ecology Notes. 7(6):965–968. doi:10.1111/j.1471-8286.2007.01821.x.
  • White C, Selkoe KA, Watson J, Siegel DA, Zacherl DC, Toonen RJ. 2010. Ocean currents help explain population genetic structure. Proceedings of the Royal Society B: Biological Sciences. 277(1688):1685–1694. doi:10.1098/rspb.2009.2214.
  • Yu H, Kai Y, Kim JK. 2016. Genetic diversity and population structure of Hyporhamphus sajori (B eloniformes: H emiramphidae) inferred from mtDNA control region and msDNA markers. Journal of Fish Biology. 89(6):2607–2624. doi:10.1111/jfb.13152.
  • Zemeckis DR, Hoffman WS, Dean MJ, Armstrong MP, Cadrin SX. 2014. Spawning site fidelity by Atlantic cod (Gadus morhua) in the Gulf of Maine: implications for population structure and rebuilding. ICES Journal of Marine Science. 71(6):1356–1365. doi:10.1093/icesjms/fsu117.
  • Zink RM, Barrowclough GF. 2008. Mitochondrial DNA under siege in avian phylogeography. Molecular Ecology. 17(9):2107–2121. doi:10.1111/j.1365-294X.2008.03737.x.