1,297
Views
21
CrossRef citations to date
0
Altmetric
Original Articles

Model-based analyses: Promises, pitfalls, and example applications to the study of cognitive control

, , &
Pages 252-267 | Published online: 29 Apr 2010

REFERENCES

  • Akaike , H. 1973 . “ Information theory as an extension of the maximum likelihood principle ” . In Second international symposium on information theory , Edited by: Petrov , B. N. and Csaki , F. 267 – 281 . Budapest , Hungary : Akademiai Kiado .
  • Behrens , T. E. J. , Hunt , L. T. , Woolrich , M. W. and Rushworth , M. F. S. 2008 . Associative learning of social value . Nature , 456 : 245 – 250 .
  • Behrens , T. E. J. , Woolrich , M. W. , Walton , M. E. and Rushworth , M. F. S. 2007 . Learning the value of information in an uncertain world . Nature Neuroscience , 10 : 1214 – 1221 .
  • Bestmann , S. , Harrison , L. M. , Blankenburg , F. , Mars , R. B. , Haggard , P. Friston , K. J. 2008 . Influences of contextual uncertainty and surprise on human corticospinal excitability during preparation for action . Current Biology , 18 : 775 – 780 .
  • Botvinick , M. M. , Braver , T. S. , Barch , D. M. , Carter , C. S. and Cohen , J. D. 2001 . Conflict monitoring and cognitive control . Psychological Review , 108 : 624 – 652 .
  • Brown , S. D. and Heathcote , A. J. 2008 . The simplest complete model of choice reaction time: Linear ballistic accumulation . Cognitive Psychology , 57 : 153 – 178 .
  • Brown , J. W. , Reynolds , J. R. and Braver , T. S. 2007 . A computational model of fractionated conflict-control mechanisms in task-switching . Cognitive Psychology , 55 : 37 – 85 .
  • Burnham , K. P. and Anderson , D. R. 2002 . Model selection and multi-model inference. A practical information-theoretic approach , 2 , New York : Springer .
  • Burnham , K. P. and Anderson , D. R. 2004 . Multimodel inference: Understanding AIC and BIC in model selection . Sociological Methods Research , 33 : 261 – 304 .
  • Cohen , J. D. , Dunbar , K. and McClelland , J. L. 1990 . On the control of automatic processes: A parallel distributed processing account of the Stroop effect . Psychological Review , 97 : 332 – 361 .
  • Cohen , M. X. 2007 . Individual differences and the neural representations of reward expectation and reward prediction errors . Social Cognitive and Affective Neuroscience , 2 : 20 – 30 .
  • Cohen , M. X. 2008 . Neurocomputational mechanisms of reinforcement-guided learning in humans: A review . Cognitive, Affective, and Behavioral Neuroscience , 8 : 113 – 125 .
  • Cohen , M. X. and Ranganath , C. 2007 . Reinforcement learning signals predict future decisions . Journal of Neuroscience , 27 : 371 – 378 .
  • Corrado , G. and Doya , K. 2007 . Understanding neural coding through the model-based analysis of decision making . Journal of Neuroscience , 27 : 8178 – 8180 .
  • Corrado , G. S. , Sugrue , L. P. , Brown , J. R. and Newsome , W. T. 2009 . “ The trouble with choice: Studying decision variables in the brain ” . In Neuroeconomics: Decision making and the brain , Edited by: Glimcher , P. W. , Camerer , C. F. , Fehr , E. and Poldrack , R. A. 463 – 480 . Amsterdam : Elsevier .
  • Critchley , H. D. , Mathias , C. J. , Josephs , O. , O'Doherty , J. , Zanini , S. Dewar , B. K. 2003 . Human cingulate cortex and autonomic control: Converging neuroimaging and clinical evidence . Brain , 126 : 2139 – 2152 .
  • D'Ardenne , K. , McClure , S. M. , Nystrom , L. E. and Cohen , J. D. 2008 . BOLD responses reflecting dopaminergic signals in the human ventral tegmental area . Science , 319 : 1264 – 1267 .
  • Dehaene , S. , Posner , M. I. and Tucker , D. M. 1994 . Localization of a neural system for error detection and compensation . Psychological Science , 5 : 303 – 305 .
  • Den Ouden , H. E. M. , Friston , K. J. , Daw , N. D. , McIntosh , A. R. and Stephan , K. E. 2009 . A dual role for prediction error in associative learning . Cerebral Cortex , 19 : 1175 – 1185 .
  • Dolan , R. J. 2008 . Neuroimaging of cognition: Past, present, and future . Neuron , 60 : 496 – 502 .
  • Donchin , E. and Coles , M. G. H. 1988 . Is the P300 component a manifestation of context updating? . Behavioral and Brain Science , 11 : 357 – 374 .
  • Duncan , J. and Owen , A. M. 2000 . Common regions of the human frontal lobe recruited by diverse cognitive demands . Trends in Neurosciences , 23 : 475 – 483 .
  • Duncan-Johnson , C. and Donchin , E. 1977 . On quantifying surprise: The variation of event-related brain potentials with subjective probability . Psychophysiology , 14 : 456 – 467 .
  • Forstmann , B. U. , Dutilh , G. , Brown , S. , Neumann , J. , Von Cramon , D. Y. Ridderinkhof , K. R. 2008 . Striatum and pre-SMA facilitate decision-making under time pressure . Proceedings of the National Academy of Sciences USA , 105 : 17538 – 17542 .
  • Friston , K. 2003 . Learning and inference in the brain . Neural Networks , 16 : 1325 – 1352 .
  • Gilbert , S. J. and Shallice , T. 2002 . Task switching: A PDP model . Cognitive Psychology , 44 : 297 – 337 .
  • Godfrey-Smith , P. 2006 . The strategy of model-based science . Biology and Philosophy , 21 : 725 – 740 .
  • Gold , J. I. and Shadlen , M. N. 2007 . The neural basis of decision making . Annual Reviews of Neuroscience , 30 : 535 – 574 .
  • Hampton , A. N. , Bossaerts , P. and O'Doherty , J. P. 2006 . The role of the ventromedial prefrontal cortex in abstract state-based inference during decision making in humans . Journal of Neuroscience , 26 : 8360 – 8367 .
  • Haynes , J. D. , Sakai , K. , Rees , G. , Gilbert , S. , Frith , C. and Passingham , R. E. 2007 . Reading hidden intentions in the human brain . Current Biology , 17 : 323 – 328 .
  • Hester , R. , Barre , N. , Murphy , K. , Silk , T. J. and Mattingley , J. B. 2008 . Human medial frontal cortex activity predicts learning from errors . Cerebral Cortex , 18 : 1933 – 1940 .
  • Holroyd , C. B. and Coles , M. G. H. 2002 . The neural basis of human error processing: Reinforcement learning, dopamine, and the error-related negativity . Psychological Review , 109 : 679 – 709 .
  • Holroyd , C. B. , Nieuwenhuis , S. , Mars , R. B. and Coles , M. G. H. 2004 . “ Anterior cingulate cortex, selection for action, and error processing ” . In Cognitive neuroscience of attention , Edited by: Posner , M. I. 219 – 231 . New York : Guilford Press .
  • Kass , R. E. and Raftery , A. E. 1993 . Bayes factors and model uncertainty , University of Washington, Seattle, WA . (Tech. Rep. No. 254)
  • Kiebel , S. J. , Garrido , M. I. , Moran , R. , Chen , C. C. and Friston , K. J. 2009 . Dynamic causal modelling for EEG and MEG . Human Brain Mapping , 20 : 1866 – 1876 .
  • Lau , B. and Glimcher , P. W. 2005 . Dynamic response-by-response models of matching behaviour in rhesus monkeys . Journal of the Experimental Analysis of Behavior , 84 : 555 – 579 .
  • Logothetis , N. K. , Pauls , J. , Auguth , M. , Trinath , T. and Oeltermann , A. 2001 . Neurophysiological investigation of the basis of the fMRI signal . Nature , 412 : 150 – 152 .
  • MacKay , D. J. C. 1992 . Bayesian interpolation . Neural Computation , 4 : 415 – 447 .
  • Marr , D. 1982 . Vision. A computational investigation into the human representation and processing of visual information , New York : W.H. Freeman and Company .
  • Mars , R. B. , Coles , M. G. H. , Grol , M. J. , Holroyd , C. B. , Nieuwenhuis , S. Hulstijn , W. 2005 . Neural dynamics of error processing in human medial frontal cortex . NeuroImage , 28 : 1007 – 1013 .
  • Mars , R. B. , Debener , S. , Gladwin , T. E. , Harrison , L. M. , Haggard , P. Rothwell , J. C. 2008 . Trial-by-trial fluctuations in the event-related electroencephalogram reflect dynamic changes in the degree of surprise . Journal of Neuroscience , 28 : 12539 – 12545 .
  • Miller , E. K. 2000 . The prefrontal cortex and cognitive control . Nature Reviews Neuroscience , 1 : 59 – 65 .
  • Monsell , S. 2003 . Task switching . Trends in Cognitive Sciences , 7 : 134 – 140 .
  • Nieuwenhuis , S. , Aston-Jones , G. and Cohen , J. D. 2005 . Decision making, the P3, and the locus coeruleus-norepinephrine system . Psychological Bulletin , 131 : 510 – 532 .
  • Nieuwenhuis , S. , Ridderinkhof , K. R. , Talsma , D. , Coles , M. G. H. , Holroyd , C. B. Kok , A. 2002 . A computational account of altered error processing in older age: Dopamine and the error-related negativity . Cognitive, Affective, and Behavioral Neuroscience , 2 : 19 – 36 .
  • O'Doherty , J. P. , Hampton , A. and Kim , H. 2007 . Model-based fMRI and its application to reward learning and decision making . Annals of the New York Academy of Sciences , 1104 : 35 – 53 .
  • Rescorla , R. A. and Wagner , A. R. 1972 . “ A theory of Pavlovian conditioning: Variations in the effectiveness of reinforcement and nonreinforcement ” . In Classical conditioning. II: Current research and theory , Edited by: Black , A. H. and Prokasy , W. F. 64 – 99 . New York : Appleton-Century-Crofts .
  • Ridderinkhof , K. R. , Ullsperger , M. , Crone , E. A. and Nieuwenhuis , S. 2004 . The role of the medial frontal cortex in cognitive control . Science , 306 : 443 – 447 .
  • Roesch , M. R. , Calu , D. J. and Schoenbaum , G. 2007 . Dopamine neurons encode the better option in rats deciding between differently delayed or sized rewards . Nature Neuroscience , 10 : 1615 – 1624 .
  • Rosa , M. J. , Bestmann , S. , Harrison , L. and Penny , W. 2010 . Bayesian model selection maps for group studies . NeuroImage , 49 : 217 – 224 .
  • Rushworth , M. F. S. and Behrens , T. E. J. 2008 . Choice, uncertainty and value in prefrontal and cingulate cortex . Nature Neuroscience , 11 : 389 – 397 .
  • Rushworth , M. F. S. , Mars , R. B. and Summerfield , C. 2009 . General mechanisms for making decisions? . Current Opinion in Neurobiology , 19 : 75 – 83 .
  • Schultz , W. , Dayan , P. and Montague , P. R. 1997 . A neural substrate of prediction and reward . Science , 275 : 1593 – 1599 .
  • Shannon , C. E. 1948 . A mathematical theory of communication . Bell Systems Technical Journal , 27 : 379 – 423 .
  • Sterret , S. G. 2002 . Physical models and fundamental laws: Using one piece of the world to tell about another . Mind & Society , 5 : 51 – 66 .
  • Sutton , R. S. and Barto , A. G. 1981 . Toward a modern theory of adaptive networks: Expectation and prediction . Psychological Review , 88 : 135 – 170 .
  • Sutton , R. S. and Barto , A. G. 1998 . Reinforcement learning: An introduction , Cambridge , MA : MIT Press .
  • Van Veen , V. and Carter , C. S. 2002 . The timing of action-related processes in the anterior cingulate cortex . Journal of Cognitive Neuroscience , 14 : 593 – 602 .
  • Walton , M. E. and Mars , R. B. 2007 . Probing human and monkey anterior cingulate cortex in variable environments . Cognitive, Affective, and Behavioral Neuroscience , 7 : 413 – 422 .
  • Weisberg , M. 2007 . Who is a modeler? . British Journal for Philosophy of Science , 58 : 207 – 233 .
  • Yu , A. and Dayan , P. 2005 . Uncertainty, neuromodulation, and attention . Neuron , 46 : 681 – 692 .