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Article

Are the responses of plant species to Quaternary climatic changes idiosyncratic? A demographic perspective from the Western Alps

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Pages 273-281 | Received 07 Feb 2017, Accepted 14 Oct 2017, Published online: 01 Nov 2017

References

  • Alvarez N, Thiel‐Egenter C, Tribsch A, Holderegger R, Manel S, Schönswetter P, Taberlet P, Brodbeck S, Gaudeul M, Gielly L. et al. 2009. History or ecology? Substrate type as a major driver of patial genetic structure in Alpine plants. Ecology Letters. 12:632–640.
  • Bennett KD, Provan J. 2008. What do we mean by ‘refugia’? Quaternary Science Reviews. 27:2449–2455.
  • Bettin O, Cornejo C, Edwards PJ, Holderegger R. 2007. Phylogeography of the high alpine plant Senecio halleri (Asteraceae) in the European Alps: in situ glacial survival with postglacial stepwise dispersal into peripheral areas. Molecular Ecology. 16:2517–2524.
  • Birks HH. 2008. The Late-Quaternary history of arctic and alpine plants. Plant Ecology and Diversity. 1:135–146.
  • Birks HJB, Willis KJ. 2008. Alpines, trees and refugia in Europe. Plant Ecology and Diversity. 1:147–160.
  • Blanco-Pastor JL, Fernández-Mazuecos M, Vargas P. 2013. Past and future demographic dynamics of alpine species: limited genetic consequences despite dramatic range contraction in a plant from the Spanish Sierra Nevada. Molecular Ecology. 22:4177–4195.
  • Burnier J, Buerki S, Arrigo N, Kupfer P, Alvarez N. 2009. Genetic structure and evolution of Alpine polyploid complexes: ranunculus kuepferi (Ranunculaceae) as a case study. Molecular Ecology. 18:3730–3744.
  • Casazza G, Granato L, Minuto L, Conti E. 2012. Polyploid evolution and Pleistocene glacial cycles: A case study from the alpine primrose Primula marginata (Primulaceae). BMC Evolutionary Biology. 12:56.
  • Casazza G, Grassi F, Zecca F, Mariotti MG, Guerrina M, Minuto L. 2013. Phylogeography of Primula allionii (Primulaceae), a narrow endemic of the Maritime Alps. Botanical Journal of Linnean Society. 173:637–653.
  • Casazza G, Grassi F, Zecca F, Minuto L. 2016. Phylogeographic insights into a peripheral refugium: the importance of cumulative effect of glaciation on the genetic structure of two endemic plants. PLoS One. 11:e0166983.
  • Drummond AJ, Rambaut A, Shapiro B, Pybus O. 2005. Bayesian coalescent inference of past population dynamics from molecular sequences. Molecular Biology and Evolution. 22:1185–1192.
  • Dullinger S, Gattringer A, Thuiller W, Moser D, Zimmermann NE, Guisan A, Willner W, Plutzar C, Leitner M, Mang T, et al. 2013. Extinction debt of high-mountain plants under twenty-first-century climate change. Nature Climate Change. 2:619–622.
  • Emerson BC, Hewitt GM. 2005. Phylogeography. Current Biology. 15:R367–371.
  • Forrest A, Escudero M, Heuertz M, Wilson Y, Cano E, Vargas P. 2016. Testing the hypothesis of low genetic diversity and population structure in narrow endemic species: the endangered Antirrhinum charidemi (Plantaginaceae). Botanical. Journal of the Linnean Society. 183:260–270.
  • Fu YX. 1997. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics. 147:915–925.
  • Gates DM. 1993. Climate change and its biological consequences. Sunderland. MA: Sinauer Associates.
  • Gill MS, Lemey P, Faria NR, Rambaut A, Shapiro B, Suchard M. 2012. Improving Bayesian population dynamics inference: a coalescent-based model for multiple loci. Molecular Biology and Evolution. 30:713–724.
  • Grassi F, Minuto L, Casazza G, Labra M, Sala F. 2009. Haplotype richness in refugial areas: phylogeographical structure of Saxifraga callosa. Journal of Plant Research. 122:377–387.
  • Heled J, Drummond AJ. 2008. Bayesian inference of population size history from multiple loci. BMC Evolutionary Biology. 8:289.
  • Heller R, Chikhi L, Siegismund HR. 2013. The confounding effect of population structure on bayesian skyline plot inferences of demographic history. PLoS One. 8:e62992.
  • Hewitt GM. 1999. Post-glacial re-colonization of European biota. Biological Journal of the Linnean Society. 68:87–112.
  • Hewitt GM. 2000. The genetic legacy of the Quaternary ice ages. Nature. 405:907–913.
  • Hewitt GM. 2004. Genetic consequences of climatic oscillations in the Quaternary. Philosophical Transactions of the Royal Society B: Biological Sciences. 359:183–195.
  • Ho S, Shapiro B. 2011. Skyline-plot methods for estimating demographic history from nucleotide sequences. Molecular Ecology Resources. 11:423–434.
  • Hudson RR, Boos DD, Kaplan NL. 1992. A statistical test for detecting geographic subdivision. Molecular Biology and Evolution. 9:138–151.
  • Minin VN, Bloomquist EW, Suchard MA. 2008. Smooth Skyride through a rough Skyline: bayesian coalescent-based inference of population dynamics. Molecular Biology and Evolution. 25::1459–1471.
  • Minuto L, Grassi F, Casazza G. 2006. Ecogeographic and genetic evaluation of endemic species in the Maritime Alps: the case of Moehringia lebrunii and M. sedoides (Caryophyllaceae). Plant Biosystems. 140:146–155.
  • Nei M, Maruyama T, Chakraborty R. 1975. The bottleneck effect and genetic variability in populations. Evolution. 29:1–10.
  • Ossowski S, Schneeberger K, Lucas-Lledó JI, Warthmann N, Richard MC, Shaw RG, Weigel D, Lynch M. 2009. The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana. Science. 327:92–94.
  • Parisod C. 2008. Postglacial recolonisation of plants in the western Alps of Switzerland. Botanica Helvetica. 118:1–12.
  • Parisod C, Besnard G. 2007. Glacial in situ survival in the Western Alps and polytopic autopolyploidy in Biscutella laevigata L (Brassicaceae). Molecular Ecology. 16:2755–2767.
  • Provan J, Bennett KD. 2008. Phylogeographic insights into cryptic glacial refugia. Trends in Ecology and Evolution. 23:564–571.
  • Randin CF, Engler R, Normand S, Zappa M, Zimmermann NE, Pearman PB, Vittoz P, Thuiller W, Guisan A. 2009. Climate change and plant distribution: local models predict high-elevation persistence. Global Change Biology. 15:1557–1569.
  • Ray N, Currat M, Excoffier L. 2003. Intra-deme molecular diversity in spatially expanding populations. Molecular Biology and Evolution. 20:76–86.
  • Richard JL. 1985. Les pelouses xérophiles de la région de Zermatt. Botanica Helvetica. 95:193–211.
  • Ronikier M, Schneeweiss GM, Schönswetter P. 2012. The extreme disjunction between Beringia and Europe in Ranunculus glacialis s. l. (Ranunculaceae) does not coincide with the deepest genetic split – a story of the importance of temperate mountain ranges in arctic-alpine phylogeography. Molecular Ecology. 21:5561–5578.
  • Scherrer D, Körner C. 2011. Topographically controlled thermal‐habitat differentiation buffers alpine plant diversity against climate warming. Journal of Biogeography. 38:406–416.
  • Scherrer D, Schmid S, Körner C. 2011. Elevational species shifts in a warmer climate are overestimated when based on weather station data. International Journal of Biometeorology. 55:645–654.
  • Schönswetter P, Stehlik I, Holderegger R, Tribsch A. 2005. Molecular evidence for glacial refugia of mountain plants in the European Alps. Molecular Ecology. 14:3547–3555.
  • Smith AS, Donoghue MJ. 2008. Rates of molecular evolution are linked to life in flowering plants. Science. 322:86–89.
  • Stehlik I. 2000. Nunataks and peripheral refugia for alpine plants during quaternary glaciation in the middle part of the Alps. Botanica Helvetica. 110:25–30.
  • Stewart JR, Lister AM, Barnes I, Dalén L. 2010. Refugia revisited: individualistic responses of species in space and time. Proceedings of the Royal Society B: Biological Sciences. 277:661–671.
  • Taberlet P, Fumagalli L, Wust-Saucy A-G, Cosson J-F. 1998. Comparative phylogeography and postglacial colonization routes in Europe. Molecular Ecology. 7:453–464.
  • Tajima F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics. 123:585–595.
  • Thuiller W, Lavorel S, Araujo MB, Sykes MT, Prentice IC. 2005. Climate change threats to plant diversity in Europe. Proceedings of the National Academy of Sciences of the USA. 102:8245–8250.
  • Tribsch A. 2004. Areas of endemism of vascular plants in the Eastern Alps in relation to Pleistocene glaciation. Journal of Biogeography. 31:747–760.
  • Winkler M, Tribsch A, Schneeweiss GM, Brodbeck S, Gugerli F, Holderegger R, Schönswetter P. 2013. Strong nuclear differentiation contrasts with widespread sharing of plastid DNA haplotypes across taxa in European purple saxifrages (Saxifraga section Porphyrion subsection Oppositifoliae). Botanical Journal of the Linnean Society. 173:622–636.
  • Ws G, Liu M, Gao T, Yanagimoto T. 2012. Limits of Bayesian skyline plot analysis of mtDNA sequences to infer historical demographies in Pacific herring (and other species). Molecular Phylogenetics and Evolution. 65:203–212.
  • Zecca G, Casazza G, Minuto L, Labra M, Grassi F. 2011. Allopatric divergence and secondary contacts in Euphorbia spinosa L: influence of climatic changes on the split of the species. Organisms Diversity and Evolution. 11:357–372.

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