High potential low-cost crude enzymes from Algerian fungal strains for plant polysaccharides hydrolysis

References

• Cerqueira Pereira S, Maehara L, Monteiro Machado CM, et al. 2G ethanol from the whole sugar cane lignocellulosic biomass. Biotechnol Biofuels. 2015;8(1):44. doi: 10.1186/s13068-015-0224-0.
   PubMedGoogle Scholar
• Kracher D, Oros D, Yao W, et al. Fungal secretomes enhance sugar beet pulp hydrolysis. Biotechnol J. 2014;9(4):483–492. doi: 10.1002/biot.201300214.
   PubMed Web of Science ®Google Scholar
• Galbe M, Wallberg O. Pretreatment for biorefineries: a review of common methods for efficient utilization of lignocellulosic materials. Biotechnol Biofuels. 2019;12(1):294. doi: 10.1186/s13068-019-1634-1
   PubMed Web of Science ®Google Scholar
• de Vries RP, Visser J. Aspergillus enzymes involved in degradation of plant cell wall polysaccharides. Microbiol Mol Biol Rev. 2001;65(4):497–522, table of contents. doi: 10.1128/MMBR.65.4.497-522.2001.
   PubMed Web of Science ®Google Scholar
• Forsberg Z, Sørlie M, Petrovi D, et al. Polysaccharide degradation by lytic polysaccharide monooxygenases. Curr Opin Struct Biol. 2019;59:54–64. doi: 10.1016/j.sbi.2019.02.015.
   PubMed Web of Science ®Google Scholar
• van den Brink J, de Vries RP. Fungal enzyme sets for plant polysaccharide degradation. Appl Microbiol Biotechnol. 2011;91(6):1477–1492. doi: 10.1007/s00253-011-3473-2.
   PubMed Web of Science ®Google Scholar
• Qing Q, Wyman CE. Supplementation with xylanase and b-xylosidase to reduce xylo-oligomer and xylan inhibition of enzymatic hydrolysis of cellulose and pretreated corn stover. Biotechnol Biofuels. 2011;4(1):18. doi: 10.1186/1754-6834-4-18.
   PubMedGoogle Scholar
• Mäkelä MR, DiFalco M, McDonnell E, et al. Genomic and exoproteomic diversity in plant biomass degradation approaches among aspergilli. Stud Mycol. 2018;91:79–99. doi: 10.1016/j.simyco.2018.09.001.
   PubMedGoogle Scholar
• Battaglia E, Benoit I, van den Brink J, et al. Carbohydrate-active enzymes from the zygomycete fungus rhizopus oryzae: a highly specialized approach to carbohydrate degradation depicted at genome level. BMC Genom. 2011;12:38.
   PubMed Web of Science ®Google Scholar
• Benoit I, Culleton H, Zhou M, et al. Closely related fungi employ diverse enzymatic strategies to degrade plant biomass. Biotechnol Biofuels. 2015;8(1):107. doi: 10.1186/s13068-015-0285-0.
   PubMedGoogle Scholar
• Chylenski P, Felby C, Østergaard Haven M, et al. Precipitation of Trichoderma reesei commercial cellulase preparations under standard enzymatic hydrolysis conditions for lignocelluloses. Biotechnol Lett. 2012;34(8):1475–1482. doi: 10.1007/s10529-012-0916-5.
   PubMed Web of Science ®Google Scholar
• Haven MO, Jørgensen H. Adsorption of β-glucosidases in two commercial preparations onto pretreated biomass and lignin. Biotechnol Biofuels. 2013;6(1):165. doi: 10.1186/1754-6834-6-165.
   PubMedGoogle Scholar
• Qian Y, Zhong L, Gao J, et al. Production of highly efficient cellulase mixtures by genetically exploiting the potential of Trichoderma reesei endogenous cellulases for hydrolysis of corncob residues. Microb Cell Fact. 2017;16(1):207. doi: 10.1186/s12934-017-0825-3.
   PubMedGoogle Scholar
• Li P, Sun H, Chen Z, et al. Construction of efficient xylose utilizing Pichia pastoris for industrial enzyme production. Microb Cell Fact. 2015;14(1):22. doi: 10.1186/s12934-015-0206-8.
   PubMedGoogle Scholar
• Gao D, Uppugundla N, Chundawat SP, et al. Hemicellulases and auxiliary enzymes for improved conversion of lignocellulosic biomass to monosaccharides. Biotechnol Biofuels. 2011;4(1):5. doi: 10.1186/1754-6834-4-5.
   PubMedGoogle Scholar
• Carbone I, Kohn LM. A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia. 1999;91(3):553–556. doi: 10.2307/3761358.
   Web of Science ®Google Scholar
• Jaklitsch WM, Komon M, Kubicek CP, et al. Hypocrea voglmayrii sp. nov. from the Austrian alps represents a new phylogenetic clade in hypocrea/trichoderma. Mycologia. 2005;97(6):1365–1378. doi: 10.1080/15572536.2006.11832743.
   PubMed Web of Science ®Google Scholar
• Higgins DG, Sharp PM. CLUSTAL: a package for performing multiple sequence alignment on a microcomputer. Gene. 1988;73(1):237–244. doi: 10.1016/0378-1119(88)90330-7.
   PubMed Web of Science ®Google Scholar
• Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol. 1987;4:406.
   PubMed Web of Science ®Google Scholar
• Kumar S, Stecher G, Li M, et al. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 2018;35(6):1547–1549. doi: 10.1093/molbev/msy096.
   PubMed Web of Science ®Google Scholar
• Jiang Y, Vivas Duarte A, van den Brink J, et al. Enhancing saccharification of wheat straw by mixing enzymes from genetically-modified Trichoderma reesei and Aspergillus niger. Biotechnol Lett. 2016;38(1):65–70. doi: 10.1007/s10529-015-1951-9.
   PubMed Web of Science ®Google Scholar
• Miller GL. Use of dinitrosalicylic acid reagent for determination of reducing sugar. Anal Chem. 1959;31(3):426–428. doi: 10.1021/ac60147a030.
   Web of Science ®Google Scholar
• Eveleigh DE, Mandels M, Andreotti R, et al. Measurement of saccharifying cellulase. Biotechnol Biofuels. 2009;2(1):21. doi: 10.1186/1754-6834-2-21.
   PubMedGoogle Scholar
• Ghose TK. Measurement of cellulase activities. Pure Appl Chem. 1987;59(2):257–268. doi: 10.1351/pac198759020257.
   Web of Science ®Google Scholar
• Jaklitsch WM, Voglmayr H. Biodiversity of Trichoderma (hypocreaceae) in Southern Europe and macaronesia. Stud Mycol. 2015;80(1):1–87. doi: 10.1016/j.simyco.2014.11.001.
   PubMedGoogle Scholar
• Jaklitsch WM, Samuels GJ, Dodd SL, et al. Hypocrea rufa/Trichoderma viride: a reassessment, and description of five closely related species with and without warted conidia. Stud Mycol. 2006;55:135.
   Google Scholar
• Samson RA, Visagie CM, Houbraken J, et al. Phylogeny, identification and nomenclature of the genus Aspergillus. Stud Mycol. 2014;78:141.
   PubMed Web of Science ®Google Scholar
• Houbraken J, Kocsub S, Visagie CM, et al. Classification of Aspergillus, Penicillium, Talaromyces and related genera (Eurotiales): an overview of families, genera, subgenera, sections, series and species. Stud Mycol. 2020;95:5–169. doi: 10.1016/j.simyco.2020.05.002.
   PubMed Web of Science ®Google Scholar
• Bian C, Kusuya Y, Sklenář F, et al. Reducing the number of accepted species in Aspergillus series nigri. Stud Mycol. 2022;102(1):95–132. doi: 10.3114/sim.2022.102.03.
   PubMedGoogle Scholar
• Varga J, Frisvad JC, Kocsubé S, et al. New and revisited species in Aspergillus section nigri. Stud Mycol. 2011;69(1):1–17. 2011. doi: 10.3114/sim.2011.69.01.
   PubMedGoogle Scholar
• Frisvad JC, Hubka V, Ezekiel CN, et al. Taxonomy of Aspergillus section flavi and their production of aflatoxins, ochratoxins and other mycotoxins. Stud Mycol. 2019;93(1):1–63. doi: 10.1016/j.simyco.2018.06.001.
   PubMedGoogle Scholar
• Meijer M, Houbraken JAMP, Dalhuijsen S, et al. Growth and hydrolase profiles can be used as characteristics to distinguish Aspergillus niger and other black aspergilla. Stud Mycol. 2011;69(1):19–30. doi: 10.3114/sim.2011.69.02.
   PubMedGoogle Scholar
• Kjærbølling I, Vesth T, Frisvad JC, et al. Comparative genomics study of 23 Aspergillus species from section flavi. Nat Commun. 2020;11(1):1106. doi: 10.1038/s41467-019-14051-y.
   PubMed Web of Science ®Google Scholar
• Vesth TC, Nybo JL, Theobald S, et al. Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section nigri. Nat Genet. 2018;50(12):1688–1695. doi: 10.1038/s41588-018-0246-1.
   PubMed Web of Science ®Google Scholar
• Zhang Y, Yang J, Luo L, et al. Low-cost cellulase-hemicellulase mixture secreted by Trichoderma harzianum EM0925 with complete saccharification efficacy of lignocellulose. Int J Mol Sci. 2020;21(2):371. doi: 10.3390/ijms21020371.
   PubMed Web of Science ®Google Scholar
• Knudsen KEB. Fiber and nonstarch polysaccharide content and variation in common crops used in broiler diets. Poult Sci. 2014;93(9):2380–2393. doi: 10.3382/ps.2014-03902.
   PubMed Web of Science ®Google Scholar
• Apprich S, Tirpanalan Ö, Hell J, et al. Wheat bran-based biorefinery 2: valorization of products. LWT - Food Sci Technol. 2014;56(2):222–e231. doi: 10.1016/j.lwt.2013.12.003.
   Web of Science ®Google Scholar
• Reyes‑Sosa FM, López Morales M, Platero Gómez AI, et al. Management of enzyme diversity in high‑performance cellulolytic cocktails. Biotechnol Biofuels. 2017;10(1):156. doi: 10.1186/s13068-017-0845-6.
   PubMedGoogle Scholar
• Mäkelä MR, Bouzid O, Robl D, et al. Cultivation of Podospora anserina on soybean hulls results in an efficient enzyme cocktail for plant biomass hydrolysis. N Biotechnol. 2017;37(Pt B):162–171. doi: 10.1016/j.nbt.2017.02.002.
   PubMedGoogle Scholar
• Peciulyte A, Pisano M, de Vries RP, et al. Hydrolytic potential of five fungal supernatants to enhance a commercial enzyme cocktail. Biotechnol Lett. 2017;39(9):1403–1411. doi: 10.1007/s10529-017-2371-9.
   PubMed Web of Science ®Google Scholar
• de Cássia Spacki K, Paixão Novi DM, Alves de Oliveira-Junior V, et al. Improving enzymatic saccharification of peach palm (Bactris gasipaes) wastes via biological pretreatment with Pleurotus ostreatus. Plants. 2023;12(15):2824. doi: 10.3390/plants12152824.
   Google Scholar
• Liu X, Ding S, Gao F, et al. Exploring the cellulolytic and hemicellulolytic activities of manganese peroxidase for lignocellulose deconstruction. Biotechnol Biofuels Bioprod. 2023;16(1):139. doi: 10.1186/s13068-023-02386-0.
   PubMedGoogle Scholar