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Divergent gene expression through PI3K/akt signalling pathway cause different models of hypertrophy growth in chicken

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Pages 1161-1173 | Received 07 Jan 2019, Accepted 15 Jun 2019, Published online: 05 Jul 2019

References

  • Bassel-Duby R, Olson EN. 2006. Signaling pathways in skeletal muscle remodeling. Annu Rev Biochem. 75:19–37.
  • Benckert C, Jonas S, Cramer T, Von Marschall Z, Schäfer G, Peters M, Wagner K, Radke C, Wiedenmann B, Neuhaus P, et al. 2003. Transforming growth factor β1 stimulates vascular endothelial growth factor gene transcription in human cholangiocellular carcinoma cells. Cancer Res. 63:1083–1092.
  • Benjamini Y, Hochberg Y. 1995. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Ser B. 57:289–300.
  • Bodine SC, Latres E, Baumhueter S, Lai VK, Nunez L, Clarke BA, Poueymirou WT, Panaro FJ, Na E, Dharmarajan K, et al. 2001. Identification of ubiquitin ligases required for skeletal muscle atrophy. Science. 294:1704–1708.
  • Brunet A, Park J, Tran H, Hu LS, Hemmings BA, Greenberg ME. 2001. Protein kinase SGK mediates survival signals by phosphorylating the forkhead transcription factor FKHRL1 (FOXO3a). Mol Cell Biol. 21:952–965.
  • Cui H-X, Liu R-R, Zhao G-P, Zheng M-Q, Chen J-L, Wen J. 2012. Identification of differentially expressed genes and pathways for intramuscular fat deposition in pectoralis major tissues of fast-and slow-growing chickens. BMC Genom. 13:213.
  • Davis AJ, Austic RE. 1997. Dietary protein and amino acid levels alter threonine dehydrogenase activity in hepatic mitochondria of Gallus domesticus. J Nutr. 127:738–744.
  • Davis RV, Lamont SJ, Rothschild MF, Persia ME, Ashwell CM, Schmidt CJ. 2015. Transcriptome analysis of post-hatch breast muscle in legacy and modern broiler chickens reveals enrichment of several regulators of myogenic growth. PLoS One. 10:e0122525.
  • Dieffenbach C, SenGupta DN, Krause D, Sawzak D, Silverman RH. 1989. Cloning of murine gelsolin and its regulation during differentiation of embryonal carcinoma cells. J Biol Chem. 264:13281–13288.
  • Dogan A, Lasch P, Neuschl C, Millrose MK, Alberts R, Schughart K, Naumann D, Brockmann GA. 2013. ATR-FTIR spectroscopy reveals genomic loci regulating the tissue response in high fat diet fed BXD recombinant inbred mouse strains. BMC Genom. 14:386.
  • Dunning KR, Anastasi MR, Zhang VJ, Russell DL, Robker RL. 2014. Regulation of fatty acid oxidation in mouse cumulus-oocyte complexes during maturation and modulation by PPAR agonists. PLoS One. 9:e87327.
  • Dveksler G, Basile A, Dieffenbach C. 1992. Analysis of gene expression: use of oligonucleotide primers for glyceraldehyde-3-phosphate dehydrogenase. Genome Res. 1:283–285.
  • Guernec A, Berri C, Chevalier B, Wacrenier-Cere N, Le Bihan-Duval E, Duclos M. 2003. Muscle development, insulin-like growth factor-I and myostatin mRNA levels in chickens selected for increased breast muscle yield. Growth Horm. IGF Res. 13:8–18.
  • Hall SJG, Bradley DG. 1995. Conserving livestock breed biodiversity. Trends Ecol Evol. 10:267–270.
  • Hart T, Komori HK, LaMere S, Podshivalova K, Salomon DR. 2013. Finding the active genes in deep RNA-seq gene expression studies. BMC Genom. 14:778.
  • Herd R, Arthur P. 2009. Physiological basis for residual feed intake. J Anim Sci. 87:E64–E71.
  • Hu P, Geles KG, Paik J-H, DePinho RA, Tjian R. 2008. Codependent activators direct myoblast-specific MyoD transcription. Dev Cell. 15:534–546.
  • Huang da W, Sherman BT, Lempicki RA. 2009. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc. 4:44–57.
  • Huang Y, Chain FJJ, Panchal M, Eizaguirre C, Kalbe M, Lenz TL, Samonte IE, Stoll M, Bornberg‐Bauer E, Reusch TB, et al. 2016. Transcriptome profiling of immune tissues reveals habitat‐specific gene expression between lake and river sticklebacks. Mol Ecol. 25:943–958.
  • Ihaka R, Gentleman R. 1996. R: a language for data analysis and graphics. J Comput Graph Stat. 5:299–314.
  • Kawakami Y, Rodriguez-León J, Belmonte J. 2006. The role of TGFbetas and Sox9 during limb chondrogenesis. Curr Opin Cell Biol. 18:723–729.
  • Kim D, Langmead B, Salzberg SL. 2015. HISAT: a fast spliced aligner with low memory requirements. Nat Methods. 12:357–360.
  • Kohroki J, Nishiyama T, Nakamura T, Masuho Y. 2005. ASB proteins interact with Cullin5 and Rbx2 to form E3 ubiquitin ligase complexes. FEBS Lett. 579:6796–6802.
  • Lagirand-Cantaloube J, Cornille K, Csibi A, Batonnet-Pichon S, Leibovitch MP, Leibovitch SA. 2009. Inhibition of atrogin-1/MAFbx mediated MyoD proteolysis prevents skeletal muscle atrophy in vivo. PloS One. 4:e4973.
  • Lange S, Perera S, Teh P, Chen J. 2012. Obscurin and KCTD6 regulate cullin-dependent small ankyrin-1 (sAnk1.5) protein turnover. Mol Biol Cell. 23:2490–2504.
  • Leask A, Abraham DJ. 2004. TGF-beta signaling and the fibrotic response . FASEB J. 18:816–827.
  • Li ZB, Kollias HD, Wagner KR. 2008. Myostatin directly regulates skeletal muscle fibrosis. J Biol Chem. 283:19371–19378.
  • Michalik L, Auwerx J, Berger JP, Chatterjee VK, Glass CK, Gonzalez FJ, Grimaldi PA, Kadowaki T, Lazar MA, O'Rahilly S, et al. 2006. International Union of Pharmacology. LXI. Peroxisome proliferator-activated receptors. Pharmacol Rev. 58:726–741.
  • Moussad EE-D, Brigstock DR. 2000. Connective tissue growth factor: what's in a name? Mol Genet Metab. 71:276–292.
  • Mullen AJ, Barton PJ. 2000. Structural characterization of the human fast skeletal muscle troponin I gene (TNNI2). Gene. 242:313–320.
  • Palmieri O, Mazza T, Merla A, Fusilli C, Cuttitta A, Martino G, Latiano T, Corritore G, Bossa F, Palumbo O, et al. 2016. Gene expression of muscular and neuronal pathways is cooperatively dysregulated in patients with idiopathic achalasia. Sci Rep. 6:31549.
  • Periasamy M, Reed TD, Liu LH, Ji Y, Loukianov E, Paul RJ, Nieman ML, Riddle T, Duffy JJ, Doetschman T, et al. 1999. Impaired cardiac performance in heterozygous mice with a null mutation in the sarco(endo)plasmic reticulum Ca2+-ATPase isoform 2 (SERCA2) gene . J Biol Chem. 274:2556–2562.
  • Prasad V, Boivin GP, Miller ML, Liu LH, Erwin CR, Warner BW, Shull GE. 2005. Haploinsufficiency of Atp2a2, encoding the sarco (endo) plasmic reticulum Ca2+-ATPase isoform 2 Ca2+ pump, predisposes mice to squamous cell tumors via a novel mode of cancer susceptibility. Cancer Res. 65:8655–8661.
  • Remignon H, Gardahaut M, Marche G, Ricard F. 1995. Selection for rapid growth increases the number and the size of muscle fibres without changing their typing in chickens. J Muscle Res Cell Motil. 16:95–102.
  • Richard D, Lin Q, Timofeeva E. 2002. The corticotropin-releasing factor family of peptides and CRF receptors: their roles in the regulation of energy balance. Eur J Pharmacol. 440:189–197.
  • Ricort JM, Binoux M. 2001. Insulin-like growth factor (IGF) binding protein-3 inhibits type 1 IGF receptor activation independently of its IGF binding affinity. Endocrinology. 142:108–113.
  • Salarpour A, Rahmatnejad E, Khotanlou H. 2015. Modelling broilers' abdominal fat in response to dietary treatments. J Anim Physiol Anim Nutr. 99:237–243.
  • Sandri M, Sandri C, Gilbert A, Skurk C, Calabria E, Picard A, Walsh K, Schiaffino S, Lecker SH, Goldberg AL. 2004. Foxo transcription factors induce the atrophy-related ubiquitin ligase atrogin-1 and cause skeletal muscle atrophy. Cell. 117:399–412.
  • Savary K, Michaud A, Favier J, Larger E, Corvol P, Gasc J-M. 2005. Role of the renin-angiotensin system in primitive erythropoiesis in the chick embryo. Blood. 105:103–110.
  • Schmidt-Strassburger U, Schips TG, Maier HJ, Kloiber K, Mannella F, Braunstein KE, Holzmann K, Ushmorov A, Liebau S, Boeckers TM, et al. 2012. Expression of constitutively active FoxO3 in murine forebrain leads to a loss of neural progenitors. FASEB J. 26:4990–5001.
  • Schmittgen TD, Livak KJ. 2008. Analyzing real-time PCR data by the comparative C(T) method. Nat Protoc. 3:1101.
  • Schoenauer R, Lange S, Hirschy A, Ehler E, Perriard J-C, Agarkova I. 2008. Myomesin 3, a novel structural component of the M-band in striated muscle. J Mol Biol. 376:338–351.
  • Trapnell C, Roberts A, Goff L, Pertea G, Kim D, Kelley DR, Pimentel H, Salzberg SL, Rinn JL, Pachter L. 2012. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc. 7:562–578.
  • Webster EL, Torpy DJ, Elenkov IJ, Chrousos GP. 1998. Corticotropin-releasing hormone and inflammation . Ann NY Acad Sci. 840:21–32.
  • Yi G, Yuan J, Bi H, Yan W, Yang N, Qu L. 2015. In-depth duodenal transcriptome survey in chickens with divergent feed efficiency using RNA-Seq. PloS One. 10:e0136765.
  • Yin H, Zhang S, Gilbert E, Siegel P, Zhu Q, Wong E. 2014. Expression profiles of muscle genes in postnatal skeletal muscle in lines of chickens divergently selected for high and low body weight. Poult Sci. 93:147–154.
  • Yoon BS, Lyons KM. 2004. Multiple functions of BMPs in chondrogenesis. J Cell Biochem. 93:93–103.
  • Yousefi Zonuz A, Alijani S, Mohammadi H, Rafat A, Daghigh Kia H. 2013. Estimation of genetic parameters for productive and reproductive traits in Esfahan native chickens. J Livestock Sci Technol. 1:34–38.
  • Zhang Y, Li D, Han R, Wang Y, Li G, Liu X, Tian Y, Kang X, Li Z. 2017. Transcriptome analysis of the pectoral muscles of local chickens and commercial broilers using Ribo-Zero ribonucleic acid sequencing. PloS One. 12:e0184115.
  • Zheng Q, Zhang Y, Chen Y, Yang N, Wang X-J, Zhu D. 2009. Systematic identification of genes involved in divergent skeletal muscle growth rates of broiler and layer chickens. BMC Genom. 10:87.
  • Zhou N, Lee WR, Abasht B. 2015. Messenger RNA sequencing and pathway analysis provide novel insights into the biological basis of chickens' feed efficiency. BMC Genom. 16:195.
  • Zuzarte-Luıs V, Montero J, Rodriguez-Leon J, Merino R, Rodrıguez-Rey J, Hurle J. 2004. A new role for BMP5 during limb development acting through the synergic activation of Smad and MAPK pathways. Dev Biol. 272:39–52.