Regulated protein depletion by the auxin-inducible degradation system in Drosophila melanogaster

References

• Kanemaki MT. Frontiers of protein expression control with conditional degrons. Pflugers Arch 2013; 465:419-25; PMID:23271452; http://dx.doi.org/10.1007/s00424-012-1203-y
   PubMed Web of Science ®Google Scholar
• Pauli A, Althoff F, Oliveira RA, Heidmann S, Schuldiner O, Lehner CF, Dickson BJ, Nasmyth K. Cell-type-specific TEV protease cleavage reveals cohesin functions in Drosophila neurons. Dev Cell 2008; 14:239-51; PMID:18267092; http://dx.doi.org/10.1016/j.devcel.2007.12.009
   PubMed Web of Science ®Google Scholar
• Taxis C, Knop M. TIPI: TEV protease-mediated induction of protein instability. Methods Mol Biol 2012; 832:611-26; PMID:22350916; http://dx.doi.org/10.1007/978-1-61779-474-2_43
   PubMedGoogle Scholar
• Varshavsky A. The N-end rule pathway and regulation by proteolysis. Protein science : a publication of the Protein Society 2011; 20:1298-345; PMID:21633985; http://dx.doi.org/10.1002/pro.666
   PubMed Web of Science ®Google Scholar
• Dohmen RJ, Wu P, Varshavsky A. Heat-inducible degron: a method for constructing temperature-sensitive mutants. Science 1994; 263:1273-6; PMID:8122109; http://dx.doi.org/10.1126/science.8122109
   PubMed Web of Science ®Google Scholar
• Speese SD, Trotta N, Rodesch CK, Aravamudan B, Broadie K. The ubiquitin proteasome system acutely regulates presynaptic protein turnover and synaptic efficacy. Curr Biol 2003; 13:899-910; PMID:12781128; http://dx.doi.org/10.1016/S0960-9822(03)00338-5
   PubMed Web of Science ®Google Scholar
• Nicholson SC, Nicolay BN, Frolov MV, Moberg KH. Notch-dependent expression of the archipelago ubiquitin ligase subunit in the Drosophila eye. Development 2011; 138:251-60; PMID:21148181; http://dx.doi.org/10.1242/dev.054429
   PubMed Web of Science ®Google Scholar
• Caussinus E, Kanca O, Affolter M. Fluorescent fusion protein knockout mediated by anti-GFP nanobody. Nat Struct Mol Biol 2011; 19:117-21; PMID:22157958; http://dx.doi.org/10.1038/nsmb.2180
   PubMed Web of Science ®Google Scholar
• Raychaudhuri N, Dubruille R, Orsi GA, Bagheri HC, Loppin B, Lehner CF. Transgenerational propagation and quantitative maintenance of paternal centromeres depends on Cid/Cenp-A presence in Drosophila sperm. PLoS Biol 2013; 10:e1001434; PMID:NOT_FOUND; http://dx.doi.org/10.1371/journal.pbio.1001434
   PubMedGoogle Scholar
• Urban E, Nagarkar-Jaiswal S, Lehner CF, Heidmann SK. The cohesin subunit Rad21 is required for synaptonemal complex maintenance, but not sister chromatid cohesion, during Drosophila female meiosis. PLoS Genet 2014; 10:e1004540; PMID:25101996; http://dx.doi.org/10.1371/journal.pgen.1004540
   PubMedGoogle Scholar
• Bätz T, Förster D, Luschnig S. The transmembrane protein Macroglobulin complement-related is essential for septate junction formation and epithelial barrier function in Drosophila. Development 2014; 141:899-908; PMID:Can't; http://dx.doi.org/10.1242/dev.102160
   PubMedGoogle Scholar
• Nishimura K, Fukagawa T, Takisawa H, Kakimoto T, Kanemaki M. An auxin-based degron system for the rapid depletion of proteins in nonplant cells. Nat Methods 2009; 6:917-22; PMID:19915560; http://dx.doi.org/10.1038/nmeth.1401
   PubMed Web of Science ®Google Scholar
• Dharmasiri N, Dharmasiri S, Estelle M. The F-box protein TIR1 is an auxin receptor. Nature 2005; 435:441-5; PMID:15917797; http://dx.doi.org/10.1038/nature03543
   PubMed Web of Science ®Google Scholar
• Kepinski S, Leyser O. The Arabidopsis F-box protein TIR1 is an auxin receptor. Nature 2005; 435:446-51; PMID:15917798; http://dx.doi.org/10.1038/nature03542
   PubMed Web of Science ®Google Scholar
• Tan X, Calderon-Villalobos LI, Sharon M, Zheng C, Robinson CV, Estelle M, Zheng N. Mechanism of auxin perception by the TIR1 ubiquitin ligase. Nature 2007; 446:640-5; PMID:17410169; http://dx.doi.org/10.1038/nature05731
   PubMed Web of Science ®Google Scholar
• Kanke M, Nishimura K, Kanemaki M, Kakimoto T, Takahashi TS, Nakagawa T, Masukata H. Auxin-inducible protein depletion system in fission yeast. BMC Cell Biol 2011; 12:8; PMID:21314938; http://dx.doi.org/10.1186/1471-2121-12-8
   PubMed Web of Science ®Google Scholar
• Holland AJ, Fachinetti D, Han JS, Cleveland DW. Inducible, reversible system for the rapid and complete degradation of proteins in mammalian cells. Proc Natl Acad Sci U S A 2012; 109:E3350-7; PMID:23150568; http://dx.doi.org/10.1073/pnas.1216880109
   PubMed Web of Science ®Google Scholar
• Kreidenweiss A, Hopkins AV, Mordmuller B. 2A and the auxin-based degron system facilitate control of protein levels in Plasmodium falciparum. PLoS One 2013; 8:e78661; PMID:24236031; http://dx.doi.org/10.1371/journal.pone.0078661
   PubMedGoogle Scholar
• Philip N, Waters AP. Conditional Degradation of Plasmodium Calcineurin Reveals Functions in Parasite Colonization of both Host and Vector. Cell Host Microbe 2015; 18:122-31; PMID:26118994; http://dx.doi.org/10.1016/j.chom.2015.05.018
   PubMed Web of Science ®Google Scholar
• Zhang L, Ward JD, Cheng Z, Dernburg AF. The auxin-inducible degradation (AID) system enables versatile conditional protein depletion in C. elegans. Development 2015; 142:4374-84; PMID:26552885; http://dx.doi.org/10.1242/dev.129635
   PubMed Web of Science ®Google Scholar
• Karadeniz A, Kaya B, Savas B, Topcuoglu SF. Effects of two plant growth regulators, indole-3-acetic acid and beta-naphthoxyacetic acid, on genotoxicity in Drosophila SMART assay and on proliferation and viability of HEK293 cells from the perspective of carcinogenesis. Toxicol Industr Health 2011; 27:840-8; PMID:NOT_FOUND; http://dx.doi.org/10.1177/0748233711399314
   PubMed Web of Science ®Google Scholar
• Daniels RW, Rossano AJ, Macleod GT, Ganetzky B. Expression of multiple transgenes from a single construct using viral 2A peptides in Drosophila. PLoS One 2014; 9:e100637; PMID:24945148; http://dx.doi.org/10.1371/journal.pone.0100637
   PubMedGoogle Scholar
• Thomas BJ, Zavitz KH, Dong XZ, Lane ME, Weigmann K, Finley RL, Brent R, Lehner CF, Zipursky SL. roughex down-regulates G2 cyclins in G1. Genes Dev 1997; 11:1289-98; PMID:9171373; http://dx.doi.org/10.1101/gad.11.10.1289
   PubMed Web of Science ®Google Scholar
• Foley E, O'Farrell PH, Sprenger F. Rux is a cyclin-dependent kinase inhibitor (CKI) specific for mitotic cyclin-Cdk complexes. Curr Biol 1999; 9:1392-402; PMID:10607563; http://dx.doi.org/10.1016/S0960-9822(00)80084-6
   PubMed Web of Science ®Google Scholar
• Weigmann K, Cohen SM, Lehner CF. Cell cycle progression, growth and patterning in imaginal discs despite inhibition of cell division after inactivation of Drosophila Cdc2 kinase. Development 1997; 124:3555-63; PMID:9342048
   PubMed Web of Science ®Google Scholar
• Bunch TA, Grinblat Y, Goldstein LS. Characterization and use of the Drosophila metallothionein promoter in cultured Drosophila melanogaster cells. Nucleic Acids Res 1988; 16:1043-61; PMID:3125519; http://dx.doi.org/10.1093/nar/16.3.1043
   PubMed Web of Science ®Google Scholar
• Brand AH, Perrimon N. Targeted gene expression as a means of altering cell fates and generating dominant phenotypes. Development 1993; 118:401-15; PMID:8223268
   PubMed Web of Science ®Google Scholar
• Metzstein MM, Krasnow MA. Functions of the nonsense-mediated mRNA decay pathway in Drosophila development. PLoS Genet 2006; 2:e180; PMID:17196039; http://dx.doi.org/10.1371/journal.pgen.0020180
   PubMed Web of Science ®Google Scholar
• Hazelett DJ, Bourouis M, Walldorf U, Treisman JE. decapentaplegic and wingless are regulated by eyes absent and eyegone and interact to direct the pattern of retinal differentiation in the eye disc. Development 1998; 125:3741-51; PMID:9716539
   PubMed Web of Science ®Google Scholar
• Freeman M. Reiterative use of the EGF receptor triggers differentiation of all cell types in the Drosophila eye. Cell 1996; 87:651-60; PMID:8929534; http://dx.doi.org/10.1016/S0092-8674(00)81385-9
   PubMed Web of Science ®Google Scholar
• Capdevila J, Guerrero I. Targeted expression of the signaling molecule decapentaplegic induces pattern duplications and growth alterations in Drosophila wings. EMBO J 1994; 13:4459-68; PMID:7925288
   PubMed Web of Science ®Google Scholar
• McGuire SE, Le PT, Osborn AJ, Matsumoto K, Davis RL. Spatiotemporal rescue of memory dysfunction in Drosophila. Science 2003; 302:1765-8; PMID:14657498; http://dx.doi.org/10.1126/science.1089035
   PubMed Web of Science ®Google Scholar
• Le T, Liang Z, Patel H, Yu MH, Sivasubramaniam G, Slovitt M, Tanentzapf G, Mohanty N, Paul SM, Wu VM, et al. A new family of Drosophila balancer chromosomes with a w- dfd-GMR yellow fluorescent protein marker. Genetics 2006; 174:2255-7; PMID:17057238; http://dx.doi.org/10.1534/genetics.106.063461
   PubMed Web of Science ®Google Scholar
• Fischer JA, Giniger E, Maniatis T, Ptashne M. GAL4 activates transcription in Drosophila. Nature 1988; 332:853-6; PMID:3128741; http://dx.doi.org/10.1038/332853a0
   PubMed Web of Science ®Google Scholar
• Gasque G, Conway S, Huang J, Rao Y, Vosshall LB. Small molecule drug screening in Drosophila identifies the 5HT2A receptor as a feeding modulation target. Scientific reports 2013; 3:srep02120; PMID:23817146; http://dx.doi.org/10.1038/srep02120
   PubMed Web of Science ®Google Scholar
• Lidsky PV, Sprenger F, Lehner CF. Distinct modes of centromere protein dynamics during cell cycle progression in Drosophila S2R+ cells. J Cell Sci 2013; 126:4782-93; PMID:23943877; http://dx.doi.org/10.1242/jcs.134122
   PubMed Web of Science ®Google Scholar
• Handke B, Szabad J, Lidsky PV, Hafen E, Lehner CF. Towards long term cultivation of Drosophila wing imaginal discs in vitro. PLoS One 2014; 9:e107333; PMID:25203426; http://dx.doi.org/10.1371/journal.pone.0107333
   PubMedGoogle Scholar
• Sprenger F, Yakubovich N, O'Farrell PH. S phase function of Drosophila cyclin A and its downregulation in G1 phase. Curr Biol 1997; 7:488-99; PMID:9210381; http://dx.doi.org/10.1016/S0960-9822(06)00220-X
   PubMed Web of Science ®Google Scholar