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Original

Molecular systematics of the three mitochondrial protein-coding genes of malaria parasites: Corroborative and new evidence for the origins of human malaria

Full-Length Research Article

Pages 471-478 | Received 28 Jul 2008, Accepted 03 Sep 2008, Published online: 11 Jul 2009

References

  • Altekar G, Dwarkadas S, Huelsenbeck JP, Ronquist F. Parallel metropolis-coupled Markov chain Monte Carlo for Bayesian phylogenetic inference. Bioinformatics 2004; 20: 407–415
  • Escalante AA, Freeland DE, Collins WE, Lal AA. The evolution of primate malaria parasites based on the gene encoding cytochrome b from the linear mitochondrial genome. Proc Natl Acad Sci USA 1998; 95: 8124–8129
  • Feagin JE, Werner E, Gardner MJ, Williamson DH, Wilson RJ. Homologies between the contiguous and fragmented rRNAs of the two Plasmodium falciparum extrachromosomal DNAs are limited to core sequences. Nucleic Acids Res 1992; 20: 879–887
  • Huelsenbeck JP, Ronquist F. MRBAYES: Bayesian inference of phylogeny. Bioinformatics 2001; 17: 754–755
  • Hughes MK, Hughes AL. Natural selection on Plasmodium surface proteins. Mol Biochem Parasitol 1995; 71: 99–113
  • Ji Y, Mericle BL, Rehkopf DH, Anderson JD, Feagin JE. The 6 kb element of Plasmodium falciparum is polycistronically transcribed. Mol Biochem Parasitol 1996; 81: 211–223
  • Joseph JT, Aldritt SM, Unnasch T, Puijalon O, Worth DF. Characterization of a conserved extrachromosomal element isolated from the avian malarial parasite Plasmodium gallinaceum. Mol Cell Biol 1989; 9: 3621–3629
  • Levine ND. The Protozoan Phylum Apicomplexa. CRC Press, Boca Raton, FL 1988; Vol. II: 154
  • Martinsen ES, Perkins SL, Schall JJ. A three-genome phylogeny of malaria parasites (Plasmodium and closely related genera): Evolution of life-history traits and host switches. Mol Phylogenet Evol 2008; 7: 261–273
  • Moore RB, Oborník M, Janouskovec J, Chrudimsky T, Vancová M, Green DH, et al. A photosynthetic alveolate closely related to the apicomplexan parasites. Nature 2008; 451: 959–963
  • Mu J, Joy DA, Duan J, Huang Y, Carlton J, Walker J, et al. Host switch leads to emergence of Plasmodium vivax in humans. Mol Biol Evol 2005; 22: 1686–1693
  • Perkins SL. Species concepts and malaria parasites: Detecting a cryptic species of Plasmodium. Proc R Soc London B 2000; 267: 2345–2350
  • Perkins SL, Schall JJ. A molecular phylogeny of malaria parasites recovered from cytochrome b gene sequences. J Parasitol 2002; 88: 972–978
  • Perkins SL, Sarkar IN, Carter R. The phylogeny of rodent malaria parasites: Simultaneous analysis across three genomes. Infect Genet Evol 2007; 7: 74–83
  • Qari SH, Shi YP, Pieniazek NJ, Collins WE, Lal AA. Phylogenetic relationship among the malaria parasites based on small subunit rRNA gene sequences: Monophyletic nature of the human malaria parasite, Plasmodium falciparum. Mol Phylogenet Evol 1996; 6: 157–165
  • Rehkopf DH, Gillespie DE, Harrell MI, Feagin JE. Transcriptional mapping and RNA processing of the Plasmodium falciparum mitochondrial mRNAs. Mol Biochem Parasitol 2000; 105: 91–103
  • Rogers MJ, McConkey GA, Li J, McCutchan TF. The ribosomal DNA loci in Plasmodium falciparum accumulate mutations independently. J Mol Biol 1995; 245: 881–891
  • Roy SM, Irimia M. Origins of human malaria: Rare genomic changes and full mitochondrial genomes confirm the relationship of Plasmodium falciparum to other mammalian parasites but complicate the origins of Plasmodium vivax. Mol Biol Evol 2008; 25: 1192–1198
  • Siregar JE, Syafruddin D, Matsuoka H, Kita K, Marzuki S. Mutation underlying resistance of Plasmodium berghei to atovaquone in the quinone binding domain 2 (Qo(2)) of the cytochrome b gene. Parasitol Int 2008; 57: 232
  • Slamovits CH, Saldarriaga JF, Larocque A, Keeling PJ. The highly reduced and fragmented mitochondrial genome of the early-branching dinoflagellate Oxrrhis marina shares characteristics with both apicomplexan and dinoflagellate mitochondrial genomes. J Mol Biol 2007; 372: 356–368
  • Stamatakis A. RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 2006; 22: 2680–2690
  • Stamatakis A, Hoover P, Rougemont J. A rapid bootstrap algorithm for the RAxML Web servers. Syst Biol 2008; 57: 758–771
  • Suplick K, Morrisey J, Vaidya AB. Complex transcription from the extrachromosomal DNA encoding mitochondrial functions of Plasmodium yoelii. Mol Cell Biol 1990; 10: 6381–6388
  • Vaidya AB, Arasu P. Tandemly arranged gene clusters of malarial parasites that are highly conserved and transcribed. Mol Biochem Parasitol 1987; 22: 249–257
  • Vaidya AB, Mather MW. A post-genomic view of the mitochondrion in malaria parasites. Curr Trend Micro Immunol 2005; 295: 233–250
  • Vaidya AB, Akella R, Suplick K. Sequences similar to genes for two mitochondrial proteins and portions of ribosomal RNA in tandemly arrayed 6-kilobase-pair DNA of a malarial parasite. Mol Biochem Parasitol 1989; 35: 97–107
  • Valkiunas G, Iezhova TA, Krizanauskiene A, Palinauskas V, Sehgal RN, Bensch S. A comparative analysis of microscopy and PCR-based detection methods for blood parasites. J Parasitol 2008; 20(1), [Epub ahead of print]
  • Wilson RJ, Moore PW, McCready S, Hajibagheri MA, Blight KJ, Strath M, Williamson DH. Recombination associated with replication of malarial mitochondrial DNA. EMBO J 1996; 15: 684–693
  • Wong S, Lau S, Woo P, Yuen KY. Bats as a continuing source of emerging infections in humans. Rev Med Virol 2007; 17: 67–91

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