Recent developments in molecular sub-typing of Listeria monocytogenes

References

• Aureli , P , Fiorucci , GC , Caroli , D , Marchiaro , G , Novara , O , Leone , L and Salmaso , S . 2000 . An outbreak of febrile gastroenteritis associated with corn contaminated by Listeria monocytogenes . N Engl J Med , 342 : 1236 – 1241 .
   PubMed Web of Science ®Google Scholar
• Bibb , WF , Schwartz , B , Gellin , BG , Plikaytis , BD and Weaver , RE . 1989 . Analysis of Listeria monocytogenes by multilocus enzyme electrophoresis and application of the method to epidemiologic investigations . Int J Food Microbiol , 8 : 233 – 239 .
   PubMed Web of Science ®Google Scholar
• Borucki , MK , Kim , SH , Call , DR , Smole , SC and Pagotto , F . 2004 . Selective discrimination of Listeria monocytogenes epidemic strains by a mixed-genome DNA microarray compared to discrimination by pulsed-field gel electrophoresis, ribotyping, and multilocus sequence typing . J Clin Microbiol , 42 : 5270 – 5276 .
   PubMed Web of Science ®Google Scholar
• Bula , CJ , Bille , J and Glauser , MP . 1995 . An epidemic of food-borne listeriosis in western Switzerland: description of 57 cases involving adults . Clin Infect Dis , 20 : 66 – 72 .
   PubMed Web of Science ®Google Scholar
• Burall , LS , Simpson , AC and Datta , AR . 2011 . Evaluation of a serotyping scheme using a combination of an antibody-based serogrouping method and a multiplex PCR assay for identifying the major serotypes of Listeria monocytogenes . J Food Prot , 74 : 403 – 409 .
   PubMed Web of Science ®Google Scholar
• Cai , S , Kabuki , DY , Kuaye , AY , Cargioli , TG , Chung , MS , Nielsen , R and Wiedmann , M . 2002 . Rational design of DNA sequence-based strategies for subtyping Listeria monocytogenes . J Clin Microbiol , 40 : 3319 – 3325 .
   PubMed Web of Science ®Google Scholar
• Call , DR , Borucki , MK and Besser , TE . 2003 . Mixed-genome microarrays reveal multiple serotype and lineage-specific differences among strains of Listeria monocytogenes . J Clin Microbiol , 41 : 632 – 639 .
   PubMed Web of Science ®Google Scholar
• Call , DR , Borucki , MK and Loge , FJ . 2003 . Detection of bacterial pathogens in environmental samples using DNA microarrays . J Microbiol Methods , 53 : 235 – 243 .
   PubMed Web of Science ®Google Scholar
• Carrique-Mas , JJ , Hokeberg , I , Andersson , Y , Arneborn , M , Tham , W , Danielsson-Tham , ML , Osterman , B , Leffler , M , Steen , M Eriksson , E . 2003 . Febrile gastroenteritis after eating on-farm manufactured fresh cheese – an outbreak of listeriosis? . Epidemiol Infect , 130 : 79 – 86 .
   PubMed Web of Science ®Google Scholar
• Chen , S , Li , J , Saleh-Lakha , S , Allen , V and Odumeru , J . 2011 . Multiple-locus variable number of tandem repeat analysis (MLVA) of Listeria monocytogenes directly in food samples . Int J Food Microbiol , 148 : 8 – 14 .
   PubMed Web of Science ®Google Scholar
• Chen , Y and Knabel , SJ . 2008 . Prophages in Listeria monocytogenes contain single-nucleotide polymorphisms that differentiate outbreak clones within epidemic clones . J Clin Microbiol , 46 : 1478 – 1484 .
   PubMed Web of Science ®Google Scholar
• Chen , Y , Zhang , W and Knabel , SJ . 2005 . Multi-virulence-locus sequence typing clarifies epidemiology of recent listeriosis outbreaks in the United States . J Clin Microbiol , 43 : 5291 – 5294 .
   PubMed Web of Science ®Google Scholar
• Chen , Y , Zhang , W and Knabel , SJ . 2007 . Multi-virulence-locus sequence typing identifies single nucleotide polymorphisms which differentiate epidemic clones and outbreak strains of Listeria monocytogenes . J Clin Microbiol , 45 : 835 – 846 .
   PubMed Web of Science ®Google Scholar
• Cheng , Y , Siletzky , RM and Kathariou , S . 2008 . “ Genomic division/lineages, epidemic clones and population structure ” . In Handbook of Listeria monocytogenes , Edited by: Liu , D . 337 – 357 . Boca Raton , FL : CRC Press .
   Google Scholar
• Cosgrove , S , Cronquist , A , Wright , G , Ghosh , T , Vogt , R and Teitell , P . 2011 . Multistate outbreak of listeriosis associated with Jensen Farms cantaloupe – United States, August–September 2011 . MMWR Morb Mortal Wkly Rep , 60 : 1357 – 1358 .
   PubMedGoogle Scholar
• Dalton , CB , Austin , CC , Sobel , J , Hayes , PS , Bibb , WF , Graves , LM , Swaminathan , B , Proctor , ME and Griffin , PM . 1997 . An outbreak of gastroenteritis and fever due to Listeria monocytogenes in milk . N Engl J Med , 336 : 100 – 105 .
   PubMed Web of Science ®Google Scholar
• Datta , AR . 2003 . “ Listeria monocytogenes ” . In International handbook of foodborne pathogens , Edited by: Miliotis , MD and Bier , JW . 105 – 121 . New York , NY : Marcel Dekker, Inc .
   Google Scholar
• Doumith , M , Buchrieser , C , Glaser , P , Jacquet , C and Martin , P . 2004 . Differentiation of the major Listeria monocytogenes serovars by multiplex PCR . J Clin Microbiol , 42 : 3819 – 3822 .
   PubMed Web of Science ®Google Scholar
• Doumith , M , Cazalet , C , Simoes , N , Frangeul , L , Jacquet , C , Kunst , F , Martin , P , Cossart , P , Glaser , P and Buchrieser , C . 2004 . New aspects regarding evolution and virulence of Listeria monocytogenes revealed by comparative genomics and DNA arrays . Infect Immun , 72 : 1072 – 1083 .
   PubMed Web of Science ®Google Scholar
• Ducey , TF , Page , B , Usgaard , T , Borucki , MK , Pupedis , K and Ward , TJ . 2007 . A single-nucleotide-polymorphism-based multilocus genotyping assay for subtyping lineage I isolates of Listeria monocytogenes . Appl Environ Microbiol , 73 : 133 – 147 .
   PubMed Web of Science ®Google Scholar
• Evans , MR , Swaminathan , B , Graves , LM , Altermann , E , Klaenhammer , TR , Fink , RC , Kernodle , S and Kathariou , S . 2004 . Genetic markers unique to Listeria monocytogenes serotype 4b differentiate epidemic clone II (hot dog outbreak strains) from other lineages . Appl Environ Microbiol , 70 : 2383 – 2390 .
   PubMed Web of Science ®Google Scholar
• Ferreira , V , Barbosa , J , Stasiewicz , M , Vongkamjan , K , Moreno Switt , A , Hogg , T , Gibbs , P , Teixeira , P and Wiedmann , M . 2011 . Diverse geno- and phenotypes of persistent Listeria monocytogenes isolates from fermented meat sausage production facilities in Portugal . Appl Environ Microbiol , 77 : 2701 – 2715 .
   PubMed Web of Science ®Google Scholar
• Fleming , DW , Cochi , SL , MacDonald , KL , Brondum , J , Hayes , PS , Plikaytis , BD , Holmes , MB , Audurier , A , Broome , CV and Reingold , AL . 1985 . Pasteurized milk as a vehicle of infection in an outbreak of listeriosis . N Engl J Med , 312 : 404 – 407 .
   PubMed Web of Science ®Google Scholar
• Gerner-Smidt , P , Hise , K , Kincaid , J , Hunter , S , Rolando , S , Hyytia-Trees , E , Ribot , EM and Swaminathan , B . 2006 . PulseNet USA: a five-year update . Foodborne Pathog Dis , 3 : 9 – 19 .
   PubMed Web of Science ®Google Scholar
• Gilmour , MW , Graham , M , Van , DG , Tyler , S , Kent , H , Trout-Yakel , KM , Larios , O , Allen , V , Lee , B and Nadon , C . 2010 . High-throughput genome sequencing of two Listeria monocytogenes clinical isolates during a large foodborne outbreak . BMC Genomics , 11 : 120
   PubMed Web of Science ®Google Scholar
• Goulet , V , Rocourt , J , Rebiere , I , Jacquet , C , Moyse , C , Dehaumont , P , Salvat , G and Veit , P . 1998 . Listeriosis outbreak associated with the consumption of rillettes in France in 1993 . J Infect Dis , 177 : 155 – 160 .
   PubMed Web of Science ®Google Scholar
• Graves , LM , Swaminathan , B and Hunter , SB . 2007 . “ Subtyping Listeria monocytogenes ” . In Listeria, listeriosis, and food safety , Edited by: Ryser , ET and Marth , EH . 283 – 304 . Boca Raton , FL : CRC Press .
   Google Scholar
• Halpin , JL , Garrett , NM , Ribot , EM , Graves , LM and Cooper , KL . 2010 . Re-evaluation, optimization, and multilaboratory validation of the PulseNet-standardized pulsed-field gel electrophoresis protocol for Listeria monocytogenes . Foodborne Pathog Dis , 7 : 293 – 298 .
   PubMed Web of Science ®Google Scholar
• Hunter , PR and Gaston , MA . 1988 . Numerical index of the discriminatory ability of typing systems: An application of Simpson's index of diversity . J Clin Microbiol , 26 : 2465 – 2466 .
   PubMed Web of Science ®Google Scholar
• Jacquet , C , Bille , J and Rocourt , J . 1992 . Typing of Listeria monocytogenes by restriction polymorphism of the ribosomal ribonucleic acid gene region . Zentralbl Bakteriol , 276 : 356 – 365 .
   PubMedGoogle Scholar
• Kathariou , S . 2002 . Listeria monocytogenes virulence and pathogenicity, a food safety perspective . J Food Prot , 65 : 1811 – 1829 .
   PubMed Web of Science ®Google Scholar
• Knabel , SJ , Reimer , A , Verghese , B , Lok , M , Ziegler , J , Farber , J , Pagotto , F , Graham , M , Nadon , CA and Gilmour , MW . 2012 . Sequence typing confirms that a predominant Listeria monocytogenes clone caused human listeriosis cases and outbreaks in Canada from 1988 to 2010 . J Clin Microbiol , 50 : 1748 – 1751 .
   PubMed Web of Science ®Google Scholar
• Laksanalamai , P , Jackson , SA , Mammel , MK and Datta , AR . 2012 . High density microarray analysis reveals new insights into genetic footprints of Listeria monocytogenes strains involved in listeriosis outbreaks . PLoS One , 7 : e32896
   PubMedGoogle Scholar
• Lindstedt , BA , Tham , W , Danielsson-Tham , ML , Vardund , T , Helmersson , S and Kapperud , G . 2008 . Multiple-locus variable-number tandem-repeats analysis of Listeria monocytogenes using multicolour capillary electrophoresis and comparison with pulsed-field gel electrophoresis typing . J Microbiol Methods , 72 : 141 – 148 .
   PubMed Web of Science ®Google Scholar
• Linnan , MJ , Mascola , L , Lou , XD , Goulet , V , May , S , Salminen , C , Hird , DW , Yonekura , ML , Hayes , P Weaver , R . 1988 . Epidemic listeriosis associated with Mexican-style cheese . N Engl J Med , 319 : 823 – 828 .
   PubMed Web of Science ®Google Scholar
• Liu , D . 2008 . “ Epidemiology ” . In Handbook of Listeria monocytogenes , Edited by: Liu , D . 27 – 59 . Boca Raton , FL : CRC Press .
   Google Scholar
• Lyytikainen , O , Autio , T , Maijala , R , Ruutu , P , Honkanen-Buzalski , T , Miettinen , M , Hatakka , M , Mikkola , J , Anttila , VJ Johansson , T . 2000 . An outbreak of Listeria monocytogenes serotype 3a infections from butter in Finland . J Infect Dis , 181 : 1838 – 1841 .
   PubMed Web of Science ®Google Scholar
• MacLean , D , Jones , JD and Studholme , DJ . 2009 . Application of ‘next-generation’ sequencing technologies to microbial genetics . Nat Rev Microbiol , 7 : 287 – 296 .
   PubMed Web of Science ®Google Scholar
• McLauchlin , J , Hall , SM , Velani , SK and Gilbert , RJ . 1991 . Human listeriosis and pate: A possible association . BMJ , 303 : 773 – 775 .
   PubMed Web of Science ®Google Scholar
• Meinersmann , RJ , Phillips , RW , Wiedmann , M and Berrang , ME . 2004 . Multilocus sequence typing of Listeria monocytogenes by use of hypervariable genes reveals clonal and recombination histories of three lineages . Appl Environ Microbiol , 70 : 2193 – 2203 .
   PubMed Web of Science ®Google Scholar
• Miettinen , MK , Siitonen , A , Heiskanen , P , Haajanen , H , Bjorkroth , KJ and Korkeala , HJ . 1999 . Molecular epidemiology of an outbreak of febrile gastroenteritis caused by Listeria monocytogenes in cold-smoked rainbow trout . J Clin Microbiol , 37 : 2358 – 2360 .
   PubMed Web of Science ®Google Scholar
• Miya , S , Kimura , B , Sato , M , Takahashi , H , Ishikawa , T , Suda , T , Takakura , C , Fujii , T and Wiedmann , M . 2008 . Development of a multilocus variable-number of tandem repeat typing method for Listeria monocytogenes serotype 4b strains . Int J Food Microbiol , 124 : 239 – 249 .
   PubMed Web of Science ®Google Scholar
• Moorhead , SM , Dykes , GA and Cursons , RT . 2003 . An SNP-based PCR assay to differentiate between Listeria monocytogenes lineages derived from phylogenetic analysis of the sigB gene . J Microbiol Methods , 55 : 425 – 432 .
   PubMed Web of Science ®Google Scholar
• Murphy , M , Corcoran , D , Buckley , JF , O'Mahony , M , Whyte , P and Fanning , S . 2007 . Development and application of multiple-locus variable number of tandem repeat analysis (MLVA) to subtype a collection of Listeria monocytogenes . Int J Food Microbiol , 115 : 187 – 194 .
   PubMed Web of Science ®Google Scholar
• Nadon , CA , Woodward , DL , Young , C , Rodgers , FG and Wiedmann , M . 2001 . Correlations between molecular subtyping and serotyping of Listeria monocytogenes . J Clin Microbiol , 39 : 2704 – 2707 .
   PubMed Web of Science ®Google Scholar
• Norton , DM and Braden , CR . 2007 . “ Foodborne listeriosis ” . In Listeria, listeriosis and food safety , Edited by: Ryser , ET and Marth , EH . 305 – 356 . Boca Raton , FL : CRC Press .
   Google Scholar
• Notermans , S and Todd , ECD . 2011 . Surveillance of listeriosis and its causative pathogen, Listeria monocytogenes . Food Control , 22 : 1484 – 1490 .
   Web of Science ®Google Scholar
• Orsi , RH , Borowsky , ML , Lauer , P , Young , SK , Nusbaum , C , Galagan , JE , Birren , BW , Ivy , RA , Sun , Q Graves , LM . 2008 . Short-term genome evolution of Listeria monocytogenes in a non-controlled environment . BMCGenomics , 9 : 539
   PubMedGoogle Scholar
• Orsi , RH , den Bakker , HC and Wiedmann , M . 2011 . Listeria monocytogenes lineages: Genomics, evolution, ecology, and phenotypic characteristics . Int J Med Microbiol , 301 : 79 – 96 .
   PubMed Web of Science ®Google Scholar
• Pichler , J , Much , P , Kasper , S , Fretz , R , Auer , B , Kathan , J , Mann , M , Huhulescu , S , Ruppitsch , W Pietzka , A . 2009 . An outbreak of febrile gastroenteritis associated with jellied pork contaminated with Listeria monocytogenes . Wien Klin Wochenschr , 121 : 149 – 156 .
   PubMed Web of Science ®Google Scholar
• Piffaretti , JC , Kressebuch , H , Aeschbacher , M , Bille , J , Bannerman , E , Musser , JM , Selander , RK and Rocourt , J . 1989 . Genetic characterization of clones of the bacterium Listeria monocytogenes causing epidemic disease . Proc Natl Acad Sci USA , 86 : 3818 – 3822 .
   PubMed Web of Science ®Google Scholar
• Rasmussen , OF , Skouboe , P , Dons , L , Rossen , L and Olsen , JE . 1995 . Listeria monocytogenes exists in at least three evolutionary lines: Evidence from flagellin, invasive associated protein and listeriolysin O genes . Microbiology , 141 ( Pt 9 ) : 2053 – 2061 .
   PubMedGoogle Scholar
• Riedo , FX , Pinner , RW , Tosca , ML , Cartter , ML , Graves , LM , Reeves , MW , Weaver , RE , Plikaytis , BD and Broome , CV . 1994 . A point-source foodborne listeriosis outbreak: documented incubation period and possible mild illness . J Infect Dis , 170 : 693 – 696 .
   PubMed Web of Science ®Google Scholar
• Roberts , AJ , Williams , SK , Wiedmann , M and Nightingale , KK . 2009 . Some Listeria monocytogenes outbreak strains demonstrate significantly reduced invasion, inlA transcript levels, and swarming motility in vitro . Appl Environ Microbiol , 75 : 5647 – 5658 .
   PubMed Web of Science ®Google Scholar
• Salamina , G , Dalle , DE , Niccolini , A , Poda , G , Cesaroni , D , Bucci , M , Fini , R , Maldini , M , Schuchat , A Swaminathan , B . 1996 . A foodborne outbreak of gastroenteritis involving Listeria monocytogenes . Epidemiol Infect , 117 : 429 – 436 .
   PubMed Web of Science ®Google Scholar
• Salcedo , C , Arreaza , L , Alcala , B , de la Fuente , L and Vazquez , JA . 2003 . Development of a multilocus sequence typing method for analysis of Listeria monocytogenes clones . J Clin Microbiol , 41 : 757 – 762 .
   PubMed Web of Science ®Google Scholar
• Scallan , E , Hoekstra , RM , Angulo , FJ , Tauxe , RV , Widdowson , MA , Roy , SL , Jones , JL and Griffin , PM . 2011 . Foodborne illness acquired in the United States – major pathogens . Emerg Infect Dis , 17 : 7 – 15 .
   PubMed Web of Science ®Google Scholar
• Schlech III , WF . 2000 . Foodborne listeriosis . Clin Infect Dis , 31 : 770 – 775 .
   PubMed Web of Science ®Google Scholar
• Schlech III , WF , Lavigne , PM , Bortolussi , RA , Allen , AC , Haldane , EV , Wort , AJ , Hightower , AW , Johnson , SE , King , SH Nicholls , ES . 1983 . Epidemic listeriosis – evidence for transmission by food . N Engl J Med , 308 : 203 – 206 .
   PubMed Web of Science ®Google Scholar
• Schwartz , DC and Cantor , CR . 1984 . Separation of yeast chromosome-sized DNAs by pulsed field gradient gel electrophoresis . Cell , 37 : 67 – 75 .
   PubMed Web of Science ®Google Scholar
• Seeliger , HP and Hohne , K . 2011 . Serotyping of Listeria monocytogenes and related species . Methods Microbiol , 13 : 31 – 49 .
   Google Scholar
• Struelens , MJ . 1996 . Consensus guidelines for appropriate use and evaluation of microbial epidemiologic typing systems . Clin Microbiol Infect , 2 : 2 – 11 .
   PubMedGoogle Scholar
• Volokhov , D , Rasooly , A , Chumakov , K and Chizhikov , V . 2002 . Identification of Listeria species by microarray-based assay . J Clin Microbiol , 40 : 4720 – 4728 .
   PubMed Web of Science ®Google Scholar
• Ward , TJ , Ducey , TF , Usgaard , T , Dunn , KA and Bielawski , JP . 2008 . Multilocus genotyping assays for single nucleotide polymorphism-based subtyping of Listeria monocytogenes isolates . Appl Environ Microbiol , 74 : 7629 – 7642 .
   PubMed Web of Science ®Google Scholar
• Ward , TJ , Gorski , L , Borucki , MK , Mandrell , RE , Hutchins , J and Pupedis , K . 2004 . Intraspecific phylogeny and lineage group identification based on the prf A virulence gene cluster of Listeria monocytogenes . J Bacteriol , 186 : 4994 – 5002 .
   PubMed Web of Science ®Google Scholar
• Wiedmann , M , Bruce , JL , Keating , C , Johnson , AE , McDonough , PL and Batt , CA . 1997 . Ribotypes and virulence gene polymorphisms suggest three distinct Listeria monocytogenes lineages with differences in pathogenic potential . Infect Immun , 65 : 2707 – 2716 .
   PubMed Web of Science ®Google Scholar
• Zhang , C , Zhang , M , Ju , J , Nietfeldt , J , Wise , J , Terry , PM , Olson , M , Kachman , SD , Wiedmann , M Samadpour , M . 2003 . Genome diversification in phylogenetic lineages I and II of Listeria monocytogenes: Identification of segments unique to lineage II populations . J Bacteriol , 185 : 5573 – 5584 .
   PubMed Web of Science ®Google Scholar