Multiplex PCR assay discriminates rabbit, rat and squirrel meat in food chain

References

• Ajayi S, Olawoye O. 1974. Some indications of social acceptance of the African Giant Rat (Cricetomys gambianus–Waterhouse) in Southern Nigeria. Niger J Forest. 4:36–41.
   Google Scholar
• Ali ME, Al Amin M, Razzak MA, Hamid SBA, Rahman MM, Rashid NA. 2016. Short amplicon-length PCR assay targeting mitochondrial cytochrome b gene for the detection of feline meats in burger formulation. Food Anal Methods. 9:571–581.
   Web of Science ®Google Scholar
• Ali ME, Asing, Hamid SBA, Razzak MA, Rashid NRA, Al Amin M, Mustafa S. 2015a. A suitable method to detect potential fraud of bringing Malayan box turtle (Cuora amboinensis) meat into the food chain. Food Addit Contam A. 32:1223–1233.
   PubMed Web of Science ®Google Scholar
• Ali ME, Hashim U, Mustafa S, Man YBC. 2012. Swine-specific PCR-RFLP assay targeting mitochondrial cytochrome B gene for semiquantitative detection of pork in commercial meat products. Food Anal Methods. 5:613–623.
   Web of Science ®Google Scholar
• Ali ME, Razzak MA, Hamid SBA. 2014. Multiplex PCR in species authentication: probability and prospects—a review. Food Anal Methods. 7:1933–1949.
   Web of Science ®Google Scholar
• Ali ME, Razzak MA, Hamid SBA, Rahman MM, Al Amin M, Rashid NRA. 2015b. Multiplex PCR assay for the detection of five meat species forbidden in Islamic foods. Food Chem. 177:214–224.
   PubMed Web of Science ®Google Scholar
• Amaral JS, Santos CG, Melo VS, Oliveira MBP, Mafra I. 2014. Authentication of a traditional game meat sausage (Alheira) by species-specific PCR assays to detect hare, rabbit, red deer, pork and cow meats. Food Res Int. 60:140–145.
   Web of Science ®Google Scholar
• Anonymous. 2016a. Rattus rattus, The IUCN Red List of Threatened Species. [accessed 2016 Jul 18. http://www.iucnredlist.org/details/19360/0.
   Google Scholar
• Anonymous. 2016b. Animal frontiers [ accessed 2016 Jul 20]. https://www.animalsciencepublications.org/publications/af/articles/2/4/40.
   Google Scholar
• Anonymous. 2016c. Diseases carried by rats [accessed 2016 Jul 18. http://www.macroevolution.net/diseases-carried-by-rats.html.
   Google Scholar
• Anonymous. 2016d. Callosciurus notatus,the IUCN red list of threatened species. [accessed 2016 Jul 18. http://www.iucnredlist.org/details/3600/0.
   Google Scholar
• Anonymous. (2016e). Tree squirrel. Wikipedia. [accessed 2016 Jul 20. https://en.wikipedia.org/wiki/Tree_squirrel.
   Google Scholar
• Anonymous. 2016f. Creutzfeldt-Jakob Disease and eating squirrel brains. [accessed 2016 Jul 20. http://www.mad-cow.org/~tom/victim23.html.
   Google Scholar
• Anonymous. 2016g. Grey squirrels can spread Lyme disease to humans. [accessed 2016 Jul 18. http://www.liverpoolecho.co.uk/news/uk-world-news/grey-squirrels-can-spread-lyme-9090382.
   Google Scholar
• Anonymous. 2016h. Role in the ecosystem [accessed 2016 Jul 18. http://www.rossoscoiattolo.eu/en/role-ecosystem.
   Google Scholar
• Arslan A, Ilhak OI, Calicioglu M. 2006. Effect of method of cooking on identification of heat processed beef using polymerase chain reaction (PCR) technique. Meat Sci. 72:326–330.
   PubMed Web of Science ®Google Scholar
• Barratt E, Gurnell J, Malarky G, Deaville R, Bruford M. 1999. Genetic structure of fragmented populations of red squirrel (Sciurus vulgaris) in the UK. Mol Ecol. 8(s1):S55-S63.
   PubMed Web of Science ®Google Scholar
• Bertolini F, Ghionda MC, D’Alessandro E, Geraci C, Chiofalo V, Fontanesi L. 2015. A next generation semiconductor based sequencing approach for the identification of meat species in DNA mixtures. PloS One. 10(4):e0121701.
   PubMed Web of Science ®Google Scholar
• Brown WM, George M, Wilson AC. 1979. Rapid evolution of animal mitochondrial DNA. Proc Natl Acad Sci. 76:1967–1971.
   PubMed Web of Science ®Google Scholar
• Cawthorn DM, Steinman HA, Hoffman LC. 2013. A high incidence of species substitution and mislabelling detected in meat products sold in South Africa. Food Control. 32:440–449.
   Web of Science ®Google Scholar
• Conrad FG, LeCocq FR, Krain R. 1968. A recent epidemic of plague in Vietnam. Arch Intern Med. 122:193–198.
   PubMedGoogle Scholar
• Dalle ZA. 2002. Perception of rabbit meat quality and major factors influencing the rabbit carcass and meat quality. Live Pro Sci. 75:11–32.
   Web of Science ®Google Scholar
• Dalle ZA, Cossu M, Parigi BR. 2000. Effect of the dietary enrichment with animal fat and vitamin E on rabbit meat shelflife and sensory properties. Proceedings of 46th ICoMST; 2000 Aug 27–Sept 1; Buenos Aires, Argentina, 4.II-P8.
   Google Scholar
• Davis LR, Marsh RE. 1990. Proc. 14th Vertebr. Pest Conf. [accessed 2016 Jul 18. http://digitalcommons.unl.edu/cgi/viewcontent.cgi?article=1019&context=vpc14.
   Google Scholar
• Deutsch J, Murakhver N. 2012. They eat that?: a cultural encyclopedia of weird and exotic food from around the world: Abc-clio. [accessed 2016 Jul 20. http://www.abc-clio.com/ABC-CLIOCorporate/product.aspx?pc=A2217C.
   Google Scholar
• Doosti A, Dehkordi PG, Rahimi E. 2014. Molecular assay to fraud identification of meat products. J Food Sci Tech. 51:148–152.
   PubMed Web of Science ®Google Scholar
• Fajardo V, González I, Martín I, Rojas M, Hernández PE, García T, Martín R. 2008. Real-time PCR for detection and quantification of red deer (Cervus elaphus), fallow deer (Dama dama), and roe deer (Capreolus capreolus) in meat mixtures. Meat Sci. 79:289–298.
   PubMed Web of Science ®Google Scholar
• Fang X, Zhang C. 2016. Detection of adulterated murine components in meat products by TaqMan© real-time PCR. Food Chem. 192:485–490.
   PubMed Web of Science ®Google Scholar
• FAOSTAT F. 2010. Food and agriculture data [accessed 2016 Jul 20]. http://faostat. fao. org. Acesso em, 23(8).
   Google Scholar
• Fiedler LA. 1990. Rodents as a food source. In: Proceedings of the Fourteenth Vertebrate Pest Conference; 1990 Mar 1; Lincoln: University of Nebraska.
   Google Scholar
• Finnegan LA, Edwards CJ, Rochford JM. 2008. Origin of, and conservation units in, the Irish red squirrel (Sciurus vulgaris) population. Conserv Gen. 9:1099–1109.
   Web of Science ®Google Scholar
• Fonseca DRR, Johnson WE, O’Brien SJ, Ramos MJ, Antunes A. 2008. The adaptive evolution of the mammalian mitochondrial genome. BMC Genomics. 9:119.
   PubMed Web of Science ®Google Scholar
• Hanapi UK, Desa MNM, Ismail A, Mustafa S. 2015. A higher sensitivity and efficiency of common primer multiplex PCR assay in identification of meat origin using NADH dehydrogenase subunit 4 gene. J Food Sci Tech. 52:4166–4175.
   PubMed Web of Science ®Google Scholar
• Haunshi S, Basumatary R, Girish P, Doley S, Bardoloi R, Kumar A. 2009. Identification of chicken, duck, pigeon and pig meat by species-specific markers of mitochondrial origin. Meat Sci. 83:454–459.
   PubMed Web of Science ®Google Scholar
• Hernàndez P, Gondret F. 2006. Rabbit meat quality. In: Maertens L, Coudert P, editors. Recent advances in rabbit sciences. Melle (Belgium): ILVO; p. 269−290.
   Google Scholar
• Hird H, Lloyd J, Goodier R, Brown J, Reece P. 2003. Detection of peanut using real-time polymerase chain reaction. Eur Food Res Technol. 217:265–268.
   Web of Science ®Google Scholar
• Hoffman L, Cawthorn D. 2012. What is the role and contribution of meat from wildlife in providing high quality protein for consumption. Anim Front. 2:40–53.
   Google Scholar
• Hossain MM, Ali ME, Hamid SBA, Mustafa S, Desa MNM, Zaidul I. 2016. Double Gene Targeting Multiplex Polymerase Chain Reaction–Restriction Fragment Length Polymorphism Assay Discriminates Beef, Buffalo, and Pork Substitution in Frankfurter Products. J Agr and Food Chem. 64:6343–6354.
   PubMed Web of Science ®Google Scholar
• Ilhak OI, Arslan A. 2007. Identification of meat species by polymerase chain reaction (PCR) technique. Turk J Vet Anim Sci. 31:159–163.
   Web of Science ®Google Scholar
• Karabasanavar NS, Singh S, Umapathi V, Kumar D, Patil G, Shebannavar SN. 2011. A highly specific PCR assay for identification of raw and heat treated mutton (Ovis aries). Small Ruminant Res. 100:153–158.
   Web of Science ®Google Scholar
• Kitpipit T, Sittichan K, Thanakiatkrai P. 2014. Direct-multiplex PCR assay for meat species identification in food products. Food Chem. 163:77–82.
   PubMed Web of Science ®Google Scholar
• Köppel R, Ruf J, Rentsch J. 2011. Multiplex real-time PCR for the detection and quantification of DNA from beef, pork, horse and sheep. Eur Food Res Technol. 232:151–155.
   Web of Science ®Google Scholar
• Li T, O’brien PC, Biltueva L, Fu B, Wang J, Nie W, Yang F. 2004. Evolution of genome organizations of squirrels (Sciuridae) revealed by cross-species chromosome painting. Chromosome Res. 12:317–335.
   PubMed Web of Science ®Google Scholar
• Mane B, Mendiratta S, Tiwari A. 2009. Polymerase chain reaction assay for identification of chicken in meat and meat products. Food Chem. 116:806–810.
   Web of Science ®Google Scholar
• Mane B, Mendiratta S, Tiwari A. 2012a. Beef specific polymerase chain reaction assay for authentication of meat and meat products. Food Cont. 28:246–249.
   Web of Science ®Google Scholar
• Mane B, Mendiratta S, Tiwari A, Bhilegaokar K. 2012b. Detection of adulteration of meat and meat products with buffalo meat employing polymerase chain reaction assay. Food Anal Methods. 5:296–300.
   Web of Science ®Google Scholar
• Morf NV, Wood KL, Köppel R, Felderer N, Daniels M, Tenger B, Kratzer A. 2013. A multiplex PCR method to identify bushmeat species in wildlife forensics. Forensic Sci Int Genet Suppl Ser. 4(1):e202–e203.
   Google Scholar
• Mutalib SA, Nazri WSW, Shahimi S, Yaakob N, Sani NA, Abdullah A, Ghani MA. 2012. Comparison between pork and wild boar meat (Sus scrofa) by polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP). Sains Malaysiana. 41:199–204.
   Web of Science ®Google Scholar
• Nejad FP, Tafvizi F, Ebrahimi MT, Hosseni SE. 2014. Optimization of multiplex PCR for the identification of animal species using mitochondrial genes in sausages. Euro Food Res Technol. 239:533–541.
   Web of Science ®Google Scholar
• O’Meara DB, Turner PD, Coffey L, O’Reilly C. 2012. TaqMan assays for species identification of the red squirrel (Sciurus vulgaris) and the grey squirrel (Sciurus carolinensis). Conser Genet Resour. 4:603–604.
   Web of Science ®Google Scholar
• Odebode A, Awe F, Famuyide O, Adebayo O, Ojo O, Daniel G. 2011. Households’ consumption patterns of grasscutter (Thryonomys swinderianus) meat within Ibadan Metropolis, Oyo State, Nigeria. Cont J Food Sci Tech. 5:49–57.
   Google Scholar
• Rafayova A, Lieskovska Z, Trakovicka A, Kovacik A. 2009. Detection of MSTN polymorphism in rabbit. Sci Papers Anim Sci Biotechnol. 42:637–641.
   Google Scholar
• Rahmania H, Rohman A. 2015. The employment of FTIR spectroscopy in combination with chemometrics for analysis of rat meat in meatball formulation. Meat Sci. 100:301–305.
   PubMed Web of Science ®Google Scholar
• Rashid NRA, Ali ME, Hamid SBA, Rahman MM, Razzak MA, Asing Amin MA. 2015. A suitable method for the detection of a potential fraud of bringing macaque monkey meat into the food chain. Food Addit Contam A. 32:1013–1022.
   PubMed Web of Science ®Google Scholar
• Razzak MA, Hamid SBA, Ali ME. 2015. A lab-on-a-chip-based multiplex platform to detect potential fraud of introducing pig, dog, cat, rat and monkey meat into the food chain. Food Addit Contam A. 32:1902–1913.
   PubMed Web of Science ®Google Scholar
• Redhead J, Boelen M. 1990. Utilization of tropical foods: animal products (Vol. 8). Food & Agriculture Org. Rome: FAO.
   Google Scholar
• Rodríguez MA, García T, González I, Asensio L, Hernández PE, Martín R. 2004. PCR identification of beef, sheep, goat, and pork in raw and heat-treated meat mixtures. J Food Pro. 67:172–177.
   PubMed Web of Science ®Google Scholar
• Rodriguez MA, Garcia T, Gonzalez I, Asensio L, Mayoral B, López-Calleja I, Martín R. 2003. Identification of goose, mule duck, chicken, turkey, and swine in foie gras by species-specific polymerase chain reaction. J Agr Food Chem. 51:1524–1529.
   PubMed Web of Science ®Google Scholar
• Rojas M, González I, Pavón MÁ, Pegels N, Lago A, Hernández PE, García T, Martín R. 2010. Novel TaqMan real-time polymerase chain reaction assay for verifying the authenticity of meat and commercial meat products from game birds. Food Addit Contam A. 27:749–763.
   Web of Science ®Google Scholar
• Rychlik W, Spencer W, Rhoads R. 1990. Optimization of the annealing temperature for DNA amplification in vitro. Nucleic Acids Res. 18:6409–6412.
   PubMed Web of Science ®Google Scholar
• Safdar M, Junejo Y. 2015. Development and validation of fast duplex real-time PCR assays based on SYBER Green florescence for detection of bovine and poultry origins in feedstuffs. Food Chem. 173:660–664.
   PubMed Web of Science ®Google Scholar
• Schoppe S 2008. The Southeast Asian Box Turtle Cuora amboinensis (Daudin, 1802) in Indonesia. NDF workshop case studies, WG 7 – Reptiles and Amphibians, Case Study 2. http://www.conabio.gob.mx/institucion/cooperacion_internacional/TallerNDF/documents.html
   Google Scholar
• Silva ID. 2017. Why is cloning required before sequencing. [ accessed 2017 Jul 6]. https://www.researchgate.net/post/Why_is_cloning_required_before_sequencing.
   Google Scholar
• Spiridonova L, Chelomina G, Starikov V, Korablev V, Zvirka M, Lyapunova E. 2005. RAPD-PCR analysis of ground squirrels from the Tobol-Ishim interfluve: evidence for interspecific hybridization between ground squirrel species Spermophilus major and S. erythrogenys. Russ J Genet+. 41:991–1001.
   Web of Science ®Google Scholar
• Staats M, Arulandhu AJ, Gravendeel B, Holst-Jensen A, Scholtens I, Peelen T, Prins TW, Kok E. 2016. Advances in DNA metabarcoding for food and wildlife forensic species identification. Anal Bioanal Chem. 408:4615–4630.
   PubMed Web of Science ®Google Scholar
• Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 28:2731–2739.
   PubMed Web of Science ®Google Scholar
• Wilson IG. 1997. Inhibition and facilitation of nucleic acid amplification. Appl Environ Microbiol. 63:3741.
   PubMed Web of Science ®Google Scholar
• Wu JH, Hong PY, Liu WT. 2009. Quantitative effects of position and type of single mismatch on single base primer extension. J Microbiol Methods. 77:267–275.
   PubMed Web of Science ®Google Scholar
• Xin W, Yue-Hui M, Hong C. 2006. Analysis of the genetic diversity and the phylogenetic evolution of Chinese sheep based on Cyt b gene sequences. Acta Genetica Sinica. 33:1081–1086.
   PubMedGoogle Scholar
• Yang I, Kim YH, Byun JY, Park SR. 2005. Use of multiplex polymerase chain reactions to indicate the accuracy of the annealing temperature of thermal cycling. Analytical Biochem. 338:192–200.
   PubMed Web of Science ®Google Scholar