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Research Articles

Quantifying the distribution and potential biotic interactions between deer and flora using species distribution modelling

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Pages 553-568 | Received 29 Sep 2022, Accepted 12 Jun 2023, Published online: 03 Jul 2023

References

  • Akashi, N., and T. Nakashizuka. 1999. “Effects of Bark-Stripping by Sika Deer (Cervus nippon) on Population Dynamics of a Mixed Forest in Japan.” Forest Ecology and Management 113 (1): 75–82. https://doi.org/10.1016/S0378-11279800415-0.
  • Allouche, O., A. Tsoar, and R. Kadmon. 2006. “Assessing the Accuracy of Species Distribution Models: Prevalence, Kappa and the True Skill Statistic (TSS).” Journal of Applied Ecology 43 (6): 1223–1232. https://doi.org/10.1111/j.1365-2664.2006.01214.x.
  • Araújo, M. B., M. Cabeza, W. Thuiller, L. Hannah, and P. H. Williams. 2004. “Would Climate Change Drive Species Out of Reserves? An Assessment of Existing Reserve‐Selection Methods.” Global Change Biology 10 (9): 1618–1626. https://doi.org/10.1111/j.1365-2486.2004.00828.x.
  • Araujo, M. B., and A. Guisan. 2006. “Five (Or So) Challenges for Species Distribution Modelling.” Journal of Biogeography 33 (10): 1677–1688. https://doi.org/10.1111/j.1365-2699.2006.01584.x.
  • Araújo, M. B., R. G. Pearson, and C. Rahbek. 2005. “Equilibrium of species’ Distributions with Climate.” Ecography 28 (5): 693–695.h. https://doi.org/10.1111/j.2005.0906-7590.04253.x.
  • Bailey, J. 2013. “The Japanese Knotweed Invasion Viewed as a Vast Unintentional Hybridisation Experiment.” Heredity 110 (2): 105–110. https://doi.org/10.1038/hdy.2012.98.
  • Barbet-Massin, M., F. Jiguet, C. Albert, and W. Thuiller. 2012. “Selecting Pseudo-Absences for Species Distribution Models: How, Where and How Many?” Methods in Ecology and Evolution 3 (2): 327–338. https://doi.org/10.1111/j.2041-210X.2011.00172.x.
  • Barbet-Massin, M., Q. Rome, C. Villemant, F. Courchamp, and L. Bosso. 2018. “Can Species Distribution Models Really Predict the Expansion of Invasive Species?” PLOS ONE 13 (3): 0193085. https://doi.org/10.1371/journal.pone.0193085.
  • Bellard, C., C. Bernery, and C. Leclerc. 2021. “Looming Extinctions Due to Invasive Species: Irreversible Loss of Ecological Strategy and Evolutionary History.” Global Change Biology 27 (20): 4967–4979. https://doi.org/10.1111/gcb.15771.
  • Bellard, C., J. M. Jeschke, B. Leroy, and G. M. Mace. 2018. “Insights from Modeling Studies on How Climate Change Affects Invasive Alien Species Geography.” Ecology and Evolution 8 (11): 5688–5700. https://doi.org/10.1002/ece3.4098.
  • Bosch, S., L. Tyberghein, K. Deneudt, F. Hernandez, O. De Clerck, and A. Syphard. 2017. “In Search of Relevant Predictors for Marine Species Distribution Modelling Using the MarineSpeed Benchmark Dataset.” Diversity and Distributions 24 (2): 144–157. https://doi.org/10.1111/ddi.12668.
  • Bretzel, F., F. Vannucchi, D. Romano, F. Malorgio, S. Benvenuti, and B. Pezzarossa. 2016. “Wildflowers: From Conserving Biodiversity to Urban Greening—A Review.” Urban Forestry & Urban Greening 20:428–436. https://doi.org/10.1016/j.ufug.2016.10.008.
  • Burch, C., R. Loraamm, T. Unnasch, and J. Downs. 2020. “Utilizing Ecological Niche Modelling to Predict Habitat Suitability of Eastern Equine Encephalitis in Florida.” Annals of GIS 26 (2): 133–147. https://doi.org/10.1080/19475683.2020.1730962.
  • Burkitt, T. D. 2009. “A comparison of ecology between sympatric native red deer (Cervus elaphus Linnaeus 1758) and introduced Japanese sika deer (Cervus nippon nippon Temminck 1836) populations in southwest Ireland“ ( Doctoral dissertation). Manchester Metropolitan University.
  • Carden, R. F., C. M. Carlin, F. Marnell, D. Mcelholm, J. Hetherington, and M. P. Gammell. 2010. “Distribution and Range Expansion of Deer in Ireland.” Mammal Review 41 (4): 313–325. https://doi.org/10.1111/j.1365-2907.2010.00170.x.
  • Chamberlain, S., V. Barve, D. Mcglinn, D. Oldoni, P. Desmet, L. Geffert, and K. Ram. 2021. “Rgbif: Interface to the Global Biodiversity Information Facility API.” R package version 3.6.0.
  • Chen, I. C., J. K. Hill, R. Ohlemüller, D. B. Roy, and C. D. Thomas. 2011. “Rapid Range Shifts of Species Associated with High Levels of Climate Warming.” Science: Advanced Materials and Devices 333 (6045): 1024–1026. https://doi.org/10.1126/science.1206432.
  • Cohen, J. 1960. “A Coefficient of Agreement for Nominal Scales.” Education and Psychological Measurement 20 (1): 37–46. https://doi.org/10.1177/001316446002000104.
  • Cooke, A. S. 2021. “Colonisation, Impacts in Conservation Woodland and Management of Reeves’ Muntjac (Muntiacus reevesi) in an English County.” European Journal of Wildlife Research 67 (3): 1–7. https://doi.org/10.1007/s10344-021-01480-8.
  • Cooke, A. S., and L. Farrell. 2001. “Impact of Muntjac Deer (Muntiacus reevesi) at Monks Wood National Nature Reserve, Cambridgeshire, Eastern England.” Forestry 74 (3): 241–250. https://doi.org/10.1093/forestry/74.3.241.
  • Crispell, J., S. Cassidy, K. Kenny, G. McGrath, S. Warde, H. Cameron, G. Rossi, et al. 2020. “Mycobacterium Bovis Genomics Reveals Transmission of Infection Between Cattle and Deer in Ireland.” Microbial Genomics 6 (8). https://doi.org/10.1099/mgen.0.000388.
  • Cunningham, C. X., G. L. Perry, D. M. Bowman, D. M. Forsyth, M. M. Driessen, M. Appleby, B. W. Brook, et al. 2022. “Dynamics and Predicted Distribution of an Irrupting ‘Sleeper’population: Fallow Deer in Tasmania.” Biological Invasions 24: 1131–1147.
  • Díaz, S., J. Settele, E. S. Brondízio, H. T. Ngo, M. Guèze, J. Agard, A. Arneth, et al. 2019. “Summary for Policymakers of the Global Assessment Report on Biodiversity and Ecosystem Services of the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services.” Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services 56.
  • Dolman, P., R. Fuller, R. Gill, D. Hooton, and R. Tabor. 2010. “Escalating Ecological Impacts of Deer in Lowland Woodland.” British Wildlife 21 (4): 242.
  • Donnelly, A., O. Crowe, E. Regan, S. Begley, and A. Caffarra. 2014. “The Role of Citizen Science in Monitoring Biodiversity in Ireland.” International Journal of Biometeorology 58 (6): 1237–1249. https://doi.org/10.1007/s00484-013-0717-0.
  • Ehrlén, J., W. F. Morris, and Y. Buckley. 2015. “Predicting Changes in the Distribution and Abundance of Species Under Environmental Change.” Ecology Letters 18 (3): 303–314. https://doi.org/10.1111/ele.12410.
  • Elith, J., and C. H. Graham. 2009. “Do They? How Do They? WHY Do They Differ? On Finding Reasons for Differing Performances of Species Distribution Models.” Ecography 32 (1): 66–77. https://doi.org/10.1111/j.1600-0587.2008.05505.x.
  • Fick, S. E., and R. J. Hijmans. 2017. “WorldClim 2: New 1‐Km Spatial Resolution Climate Surfaces for Global Land Areas.” International Journal of Climatology 37 (12): 4302–4315. https://doi.org/10.1002/joc.5086.
  • Franklin, J. 2010. Mapping Species Distributions: Spatial Inference and Prediction. Cambridge, UK: Cambridge University Press.
  • Fuller, R. J., and R. M. Gill. 2010. The Spread of Non-Native Muntjac and Fallow Deer: A Problem for Lowland Woodland Birds. BOU ProcNet. https://www.researchgate.net/profile/Robin-Gill-2/publication/267413401_The_spread_of_non-native_Muntjac_and_Fallow_Deer_a_problem_for_lowland_woodland_birds/links/54b3c53f0cf26833efced5ee/The-spread-of-non-native-Muntjac-and-Fallow-Deer-a-problem-for-lowland-woodland-birds.pdf
  • Gallien, L., R. Douzet, S. Pratte, N. E. Zimmermann, and W. Thuiller. 2012. “Invasive Species Distribution Models–How Violating the Equilibrium Assumption Can Create New Insights.” Global Ecology and Biogeography 21 (11): 1126–1136. https://doi.org/10.1111/j.1466-8238.2012.00768.x.
  • Gaughran, A., and J. Stout. 2020. “Biodiversity Audit at Áras an Uachtaráin. Final Report.“ Accessed 1 May 2022. https://phoenixpark.ie/wp-content/uploads/2020/11/aras-an-uachtarain-biodiveristy-audit-final-report.pdf.
  • Gaul, W., D. Sadykova, H. J. White, L. Leon-Sanchez, P. Caplat, M. C. Emmerson, and J. M. Yearsley. 2020. “Data Quantity is More Important Than Its Spatial Bias for Predictive Species Distribution Modelling.” PeerJ 8:e10411. https://doi.org/10.7717/peerj.10411.
  • GBIF.2021a. “GBIF Occurrence Download.“ Accessed 7 March 2022. https://doi.org/10.15468/dl.cb2hsf.
  • GBIF. 2021b. “GBIF Occurrence Download.“ Accessed 7 March 2022. https://doi.org/10.15468/dl.qm4v2t.
  • GBIF.2022a. “GBIF Occurrence Download.“ Accessed December 2022. https://doi.org/10.15468/dl.92jj3s.
  • GBIF. 2022b. “GBIF Occurrence Download.“ Accessed December 2022. https://doi.org/10.15468/dl.be7krr.
  • GBIF. 2022c. “GBIF Occurrence Download.“ Accessed December 2022. https://doi.org/10.15468/dl.yc59mu.
  • GBIF. 2022d. “GBIF Occurrence Download.“ Accessed December 2022. https://doi.org/10.15468/dl.qgemaq.
  • GBIF. 2022e. “GBIF Occurrence Download.” Accessed December 2022. https://doi.org/10.15468/dl.ucepps.
  • GBIF. 2022f. “GBIF Occurrence Download.“ Accessed December 2022. https://doi.org/10.15468/dl.zrhwa2
  • GBIF. 2022g. “GBIF Occurrence Download.“ Accessed December 2022. https://doi.org/10.15468/dl.nvnscr.
  • GBIF. 2022h. “GBIF Occurrence Download.“ Accessed December 2022. https://doi.org/10.15468/dl.ah5fq7.
  • GBIF.2022i. “GBIF Occurrence Download.“ Accessed December 2022. https://doi.org/10.15468/dl.waw9qx.
  • GBIF. 2022j. “GBIF Occurrence Download.“ Accessed December 2022. https://doi.org/10.15468/dl.dcatgu.
  • GBIF. 2022k. “GBIF Occurrence Download.“ Accessed December 2022. https://doi.org/10.15468/dl.gtnw2a.
  • GBIF. 2022l. “GBIF Occurrence Download.“ Accessed December 2022. https://doi.org/10.15468/dl.txwcpa.
  • GBIF. 2022m. “GBIF Occurrence Download.“ Accessed December 2022. https://doi.org/10.15468/dl.sz5x6g.
  • GBIF. 2022n. “GBIF Occurrence Download.“ Accessed December 2022. https://doi.org/10.15468/dl.6qzmh7.
  • GBIF. 2022o. “GBIF Occurrence Download.“ Accessed 7 March 2022. https://doi.org/10.15468/dl.2a5f6c.
  • Gélin, U., M. Keller, V. de Beaupuis, R. Nowak, F. Lévy, and Y. Locatelli. 2019. “Impact of Hybridization Between Sika and Red Deer on Phenotypic Traits of the Newborn and Mother–Young Relationships.” Animal Behaviour 158:65–75. https://doi.org/10.1016/j.anbehav.2019.09.016.
  • Gent, P. R., G. DANABASOGLU, L. J. Donner, M. M. Holland, E. C. Hunke, S. R. Jayne, D. M. Lawrence, et al. 2011. “The Community Climate System Model Version 4.” Journal of Climate 24 (19): 4973–4991. https://doi.org/10.1175/2011JCLI4083.1.
  • Gilbert, O. L., and P. Anderson. 1998. Habitat Creation and Repair. Oxford, UK: Oxford University Press.
  • Goodwin, H. 1943. “Frangula Alnus Miller.” The Journal of Ecology 31 (1): 77–92. https://doi.org/10.2307/2256793.
  • Hanley, J. A., and B. J. McNeil. 1982. “The Meaning and Use of the Area Under a Receiver Operating Characteristic (ROC) Curve. Distributions and Projecting Potential Future Shifts Under.” Radiology 143 (1): 29–33. https://doi.org/10.1148/radiology.143.1.7063747.
  • Hao, T., J. Elith, J. J. Lahoz‐Monfort, and G. Guillera‐Arroita. 2020. “Testing Whether Ensemble Modelling is Advantageous for Maximising Predictive Performance of Species Distribution Models.” Ecography 43 (4): 549–558. https://doi.org/10.1111/ecog.04890.
  • Hawthorne, D., D. Colombaroli, and F. J. Mitchell. 2021. “Palaeoecological Records as a Guide for Fire Management in Killarney National Park, Ireland.“ Proceedings of the Geologists’, Association. https://doi.org/10.1016/j.pgeola.2021.09.004
  • Hickey, K. R. 2013. Wolves in Ireland: A Natural and Cultural History. Ireland: Four Courts Press.
  • Hijmans, R. J. 2012. “Cross-Validation of Species Distribution Models: Removing Spatial Sorting Bias and Calibration with a Null Model.” Ecology 93:679–688. https://doi.org/10.1890/11-0826.1.
  • Holloway, P., and J. A. Miller. 2017. “A Quantitative Synthesis of the Movement Concepts Used within Species Distribution Modelling.” Ecological Modelling 356:91–103. https://doi.org/10.1016/j.ecolmodel.2017.04.005.
  • Holloway, P., J. A. Miller, and S. Gillings. 2016. “Incorporating Movement in Species Distribution Models: How Do Simulations of Dispersal Affect the Accuracy and Uncertainty of Projections?” International Journal of Geographical Information Science 30 (10): 2050–2074. https://doi.org/10.1080/13658816.2016.1158823.
  • Homolka, M., and M. Heroldová. 2003. “Impact of Large Herbivores on Mountain Forest Stands in the Beskydy Mountains.” Forest Ecology and Management 181 (1–2): 119–129. https://doi.org/10.1016/S0378-11270300121-X.
  • Husheer, S. W., and C. M. Frampton. 2005. “Fallow Deer Impacts on Wakatipu Beech Forest.” New Zealand Journal of Ecology 29 (1): 83–94.
  • Huxel, G. R. 1999. “Rapid Displacement of Native Species by Invasive Species: Effects of Hybridization.” Biological Conservation 89 (2): 143–152. https://doi.org/10.1016/S0006-32079800153-0.
  • Iida, T., M. Soga, and S. Koike. 2016. “Effects of an Increase in Population of Sika Deer on Beetle Communities in Deciduous Forests.” ZooKeys 625:67. https://doi.org/10.3897/zookeys.625.9116.
  • Ikeda, T., H. Takahashi, T. Yoshida, H. Igota, and K. Kaji. 2013. “Evaluation of Camera Trap Surveys for Estimation of Sika Deer Herd Composition.” Mammal Study 38 (1): 29–33. https://doi.org/10.3106/041.038.0103.
  • Kaji, K., T. Koizumi, and N. Ohtaishi. 1988. “Effects of Resource Limitation on the Physical and Reproductive Condition of Sika Deer on Nakanoshima Island, Hokkaido.” Acta Theriologica 33 (13): 187–208, plate 15. https://doi.org/10.4098/AT.arch.88-15.
  • Kang, J., X. Yang, Z. Wang, H. Cheng, J. Wang, H. Tang, Y. Li, Z. Bian, and Z. Bai. 2022. “Comparison of Three Ten Meter Land Cover Products in a Drought Region: A Case Study in Northwestern China.” Land 11 (3): 427. https://doi.org/10.3390/land11030427.
  • Kato, M., and Y. Okuyama. 2004. “Changes in the Biodiversity of a Deciduous Forest Ecosystem Caused by an Increase in the Sika Deer Population at Ashiu, Japan.” Control Biology Lab Kyoto University 29:437–448.
  • Kelly, D. J., E. Mullen, and M. Good. 2021. “Bovine Tuberculosis: The Emergence of a New Wildlife Maintenance Host in Ireland.” Frontiers in Veterinary Science 8. https://doi.org/10.3389/fvets.2021.632525.
  • Laffan, S. W., A. K. Skidmore, and J. Franklin. 2014. “Species Distribution and Diversity, Habitat Selection and Connectivity: Introduction to the Third Special Issue on Spatial Ecology.” International Journal of Geographical Information Science 28 (8): 1527–1530. https://doi.org/10.1080/13658816.2014.902950.
  • Lambert, L., F. Cawkwell, and P. Holloway. 2021. “The Importance of Connected and Interspersed Urban Green and Blue Space for Biodiversity: A Case Study in Cork City, Ireland.” Geographies 1 (3): 217–237. https://doi.org/10.3390/geographies1030013.
  • Lek, S., and J. Guégan. 2000. “Artificial Neural Networks as a Tool in Ecological Modelling, an Introduction.” Ecological Modelling 120 (2–3): 65–73. https://doi.org/10.1016/S0304-3800(99)00092-7.
  • Liaw, A., and M. Wiener. 2002. “Classification and Regression by RandomForest.” R news 2 (3): 18–22 .
  • Linders, T. E. W., U. Schaffner, R. Eschen, A. Abebe, S. K. Choge, L. Nigatu, P. R. Mbaabu, H. Shiferaw, E. Allan, and P. Alpert. 2019. “Direct and Indirect Effects of Invasive Species: Biodiversity Loss is a Major Mechanism by Which an Invasive Tree Affects Ecosystem Functioning.” Journal of Ecology 107 (6): 2660–2672. https://doi.org/10.1111/1365-2745.13268.
  • Liu, C., P. M. Berry, T. P. Dawson, and R. G. Pearson. 2005. “Selecting Thresholds of Occurrence in the Prediction of Species Distributions.” ECOGRAPHY 28 (3): 385–393. https://doi.org/10.1111/j.0906-7590.2005.03957.x.
  • Liu, Y., and M. Nieuwenhuis. 2014 An Analysis of Habitat-Use Patterns of Fallow and Sika Deer Based on Culling Data from Two Estates in Co. Wicklow. Irish Forestry Journal 71 (1&2). https://journal.societyofirishforesters.ie/index.php/forestry/article/view/10132
  • Liu, Y., M. Nieuwenhuis, and A. McCullagh. 2018. “The Effect of Roadside Land-Use on the Occurrence of Deer Vehicle Collisions.” Irish Forestry 75 (1&2): 8–25.
  • Mann, J. C. E., and R. J. Putman. 1989. “Diet of British Sika Deer in Contrasting Environments.” Acta Theriologica 34 (6): 97–109. https://doi.org/10.4098/AT.arch.89-6.
  • Marozas, V., K. Pėtelis, G. Brazaitis, and J. Baranauskaitė. 2009. “Early Changes of Ground Vegetation in Fallow Deer Enclosure.” Baltic Forestry 15 (2): 268–272.
  • McDevitt, A. D., C. J. Edwards, P. O’Toole, P. O’Sullivan, C. O’Reilly, and R. F. Carden. 2009. “Genetic Structure Of, and Hybridisation Between, Red (Cervus elaphus) and Sika (Cervus nippon) Deer in Ireland.” Mammalian Biology 74 (4): 263–273. https://doi.org/10.1016/j.mambio.2009.03.015.
  • McDonough, S., and P. Holloway. 2020. “Incorporating Host-Parasite Biotic Factors in Species Distribution Models: Modelling the Distribution of the Castor Bean Tick, Ixodes Ricinus.” Irish Geography 53 (2): 105–125.
  • McHugh, M. 2012. “Interrater Reliability: The Kappa Statistic.” Biochemia Medica 276–282. https://doi.org/10.11613/BM.2012.031.
  • McMahon, D. E., A. K. Urza, J. L. Brown, C. Phelan, J. C. Chambers, and I. Ibáñez. 2021. “Modelling Species Distributions and Environmental Suitability Highlights Risk of Plant Invasions in Western United States.” Diversity and Distributions 27 (4): 710–728. https://doi.org/10.1111/ddi.13232.
  • Meinshausen, M., S. J. Smith, K. Calvin, J. S. Daniel, M. L. Kainuma, J. F. Lamarque, K. Matsumoto, et al. 2011. “The RCP Greenhouse Gas Concentrations and Their Extensions from 1765 to 2300.” Climatic Change 109 (1): 213–241. https://doi.org/10.1007/s10584-011-0156-z.
  • Meyer, T., P. Holloway, T. B. Christiansen, J. A. Miller, P. D’Odorico, and G. S. Okin. 2019. “An Assessment of Multiple Drivers Determining Woody Species Composition and Structure: A Case Study from the Kalahari, Botswana.” Land 8 (8): 122. https://doi.org/10.3390/land8080122.
  • Miller, J. A., and P. Holloway. 2017 Niche Theory and Models International Encyclopedia of Geography: People, the Earth, Environment and Technology: People, the Earth, Environment and Technology, 1–10. Hoboken, NJ, USA: John Wiley & Sons.
  • Miller, J., S. Laffan, A. Skidmore, and J. Franklin. 2020. “Modeling Movement, Distributions, Diversity, and Disturbance: Introduction to the Fifth Special Issue on Spatial Ecology.” International Journal of Geographical Information Science 34 (8): 1503–1507. https://doi.org/10.1080/13658816.2020.1725017.
  • Mody, K., D. Lerch, A. K. Müller, N. K. Simons, N. Blüthgen, M. Harnisch, and K. Del-Claro. 2020. “Flower Power in the City: Replacing Roadside Shrubs by Wildflower Meadows Increases Insect Numbers and Reduces Maintenance Costs.” PloS One 15 (6): 0234327. https://doi.org/10.1371/journal.pone.0234327.
  • Morecroft, M. D. 2003. “Impacts of Deer Herbivory on Ground Vegetation at Wytham Woods, Central England.” Forestry 74 (3): 251–257. https://doi.org/10.1093/forestry/74.3.251.
  • Morera-Pujol, V., P. S. Mostert, K. Murphy, T. Burkitt, B. Coad, B. J. McMahon, M. Nieuwenhuis, K. Morelle, A. Ward, and S. Ciuti. 2022. “Bayesian Species Distribution Models Integrate Presence-Only and Presence-Absence Data to Predict Deer Distribution and Relative Abundance.“ bioRxiv.
  • National Botanical Gardens. 2017. “The Red Data List of Irish Vascular Plants.“ Accessed 1 May 2022. https://botanicgardens.ie/science-and-learning/threatened-plants-in-ireland/.
  • Nic Lughadha, E., S. Bachman, T. Leão, F. Forest, J. Halley, J. Moat, C. Acedo, et al. 2020. “Extinction Risk and Threats to Plants and Fungi.” Plants, People, Planet 2 (5): 389–408. https://doi.org/10.1002/ppp3.10146.
  • Ohashi, H., M. Yoshikawa, K. Oono, N. Tanaka, Y. Hatase, and Y. Murakami. 2014. “The Impact of Sika Deer on Vegetation in Japan: Setting Management Priorities on a National Scale.” Environmental Management 54 (3): 631–640. https://doi.org/10.1007/s00267-014-0326-7.
  • O’Mahony, J., R. de la Torre Cerro, and P. Holloway. 2021. “Modelling the Distribution of the Red Macroalgae Asparagopsis to Support Sustainable Aquaculture Development.” AgriEngineering 3 (2): 251–265. https://doi.org/10.3390/agriengineering3020017.
  • O’Rourke, H., E. N. Lughadha, and K. L. Bacon. 2022. “Can the Extinction Risk of Irish Vascular Plants Be Predicted Using Leaf Traits?” Biodiversity and Conservation 1–23. https://doi.org/10.1007/s10531-022-02500-y.
  • Pejchar, L., and H. A. Mooney. 2009. “Invasive Species, Ecosystem Services and Human Well-Being.” Trends in Ecology & Evolution 24 (9): 497–504. https://doi.org/10.1016/j.tree.2009.03.016.
  • Pérez-Espona, S., J. M. Pemberton, and R. Putman. 2009. “Red and Sika Deer in the British Isles, Current Management Issues and Management Policy.” Mammalian Biology 74 (4): 247–262. https://doi.org/10.1016/j.mambio.2009.01.003.
  • Perrin, P. M., F. J. Mitchell, and D. L. Kelly. 2011. “Long-Term Deer Exclusion in Yew-Wood and Oakwood Habitats in Southwest Ireland: Changes in Ground Flora and Species Diversity.” Forest Ecology and Management 262 (12): 2328–2337. https://doi.org/10.1016/j.foreco.2011.08.028.
  • Peterson, A. T., J. Soberon, R. G. Pearson, R. P. Anderson, E. Martinez-Meyer, M. Nakamura, and M. B. Araujo. 2011. Ecological Niches and Geographic Distributions, 315. Princeton, New Jersey: Princeton University Press.
  • Peterson, A. T., J. Soberón, J. Ramsey, and L. Osorio-Olvera. 2020. “Co-Occurrence Networks Do Not Support Identification of Biotic Interactions.” Biodiversity Informatics 15 (1): 1–10. https://doi.org/10.17161/bi.v15i1.9798.
  • Pollard, E., and A. S. Cooke. 1994. “Impact of Muntjac Deer Muntiacus reevesi on Egg-Laying Sites of the White Admiral Butterfly Ladoga Camilla in a Cambridgeshire Wood.” Biological Conservation 70 (2): 189–191. https://doi.org/10.1016/0006-32079490287-9.
  • Pontius, R. G., Jr, and M. Millones. 2011. “Death to Kappa: Birth of Quantity Disagreement and Allocation Disagreement for Accuracy Assessment.” International Journal of Remote Sensing 32 (15): 4407–4429. https://doi.org/10.1080/01431161.2011.552923.
  • R Core Team. 2021. “R: A Language and Environment for Statistical Computing.“ Vienna, Austria: R Foundation for Statistical Computing. https://www.R-project.org.
  • Renner, I. W., and D. I. Warton. 2013. “Equivalence of MAXENT and Poisson Point Process Models for Species Distribution Modeling in Ecology.” Biometrics 69 (1): 274–281. https://doi.org/10.1111/j.1541-0420.2012.01824.x.
  • Ripley, B. 1996. Pattern Recognition and Neural Networks. Cambridge, UK: Cambridge Univ. Press. https://doi.org/10.1017/CBO9780511812651.
  • Román-Palacios, C., and J. J. Wiens. 2020. “Recent Responses to Climate Change Reveal the Drivers of Species Extinction and Survival.” Proceedings of the National Academy of Sciences 117 (8): 4211–4217. https://doi.org/10.1073/pnas.1913007117.
  • Rooney, T. P., and D. M. Waller. 2003. “Direct and Indirect Effects of White-Tailed Deer in Forest Ecosystems.” Forest Ecology and Management 181 (1–2): 165–176. https://doi.org/10.1016/S0378-11270300130-0.
  • Saggiomo, L., B. Esattore, and F. Picone. 2020. “What are We Talking About? Sika Deer (Cervus nippon): A Bibliometric Network Analysis.” Ecological Informatics 60:101146. https://doi.org/10.1016/j.ecoinf.2020.101146.
  • Schank, C. J., M. V. Cove, M. J. Kelly, E. Mendoza, G. O’Farrill, R. Reyna‐Hurtado, N. Meyer, et al. 2017. “Using a Novel Model Approach to Assess the Distribution and Conservation Status of the Endangered Baird’s Tapir.” Diversity and Distributions 23 (12): 1459–1471. https://doi.org/10.1111/ddi.12631.
  • Schmitz, O. J., M. Sylvén, T. B. Atwood, E. S. Bakker, F. Berzaghi, J. F. Brodie, J. P. Cromsigt, et al. 2023. “Trophic Rewilding Can Expand Natural Climate Solutions.” Nature Climate Change, (4): 1–10. https://doi.org/10.1038/s41558-023-01631-6.
  • Schymanski, S. J., C. F. Dormann, J. Cabral, I. Chuine, C. H. Graham, F. Hartig, M. Kearney, et al. 2013. “Process, Correlation and Parameter Fitting in Species Distribution Models: A Response to Kriticos et al.” Journal of Biogeography 40 (3): 612–613. https://doi.org/10.1111/jbi.12075.
  • Smith, P., M. Bustamante, and H. Ahammad. 2014. “Agriculture, Forestry and Other Land Use (AFOLU).” In Climate Change 2014: Mitigation of Climate Change. Contribution of Working Group III to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change, edited by O. Edenhofer, R. Pichs-Madruga, and Y. Sokona, et al., 811–922. Cambridge: Cambridge University Press.
  • Soberon, J., and A. T. Peterson. 2005. “Interpretation of Models of Fundamental Ecological Niches and species’ Distributional Areas.” Biodiversity Informatics 2:1–10. https://doi.org/10.17161/bi.v2i0.4.
  • Stanton, J. C., R. G. Pearson, N. Horning, P. Ersts, and H. Reşit Akçakaya. 2012. “Combining Static and Dynamic Variables in Species Distribution Models Under Climate Change.” Methods in Ecology and Evolution 3 (2): 349–357. https://doi.org/10.1111/j.2041-210X.2011.00157.x.
  • Svenning, J. C., P. B. Pedersen, C. J. Donlan, R. Ejrnæs, S. Faurby, M. Galetti, D. M. Hansen, et al. 2016. “Science for a Wilder Anthropocene: Synthesis and Future Directions for Trophic Rewilding Research.” Proceedings of the National Academy of Sciences 113 (4): 898–906.
  • Thuiller, W. 2004. “Patterns and Uncertainties of species’ Range Shifts Under Climate Change.” Global Change Biology 10 (12): 2020–2027. https://doi.org/10.1111/j.1365-2486.2004.00859.x.
  • Thuiller, W., D. Georges, R. Engler, F. Breiner, M. D. Georges, and C. W. Thuiller. 2016. “Package ‘Biomod2’. Species Distribution Modeling within an Ensemble Forecasting Framework.”
  • Uno, H., Y. Inatomi, M. Ueno, and H. Iijima. 2019. “Effects of Sika Deer (Cervus nippon) and Dwarf Bamboo (Sasa senanensis) on Tree Seedlings in a Cool-Temperate Mixed Forest on Hokkaido Island, Japan.” European Journal of Forest Research 138 (6): 929–938. https://doi.org/10.1007/s10342-019-01214-1.
  • van Proosdij, A. S., M. S. Sosef, J. J. Wieringa, and N. Raes. 2016. “Minimum Required Number of Specimen Records to Develop Accurate Species Distribution Models.” Ecography 39 (6): 542–552. https://doi.org/10.1111/ecog.01509.
  • Vega, K. A., and C. Küffer. 2021. “Promoting Wildflower Biodiversity in Dense and Green Cities: The Important Role of Small Vegetation Patches.” Urban Forestry & Urban Greening 62:127165. https://doi.org/10.1016/j.ufug.2021.127165.
  • Ward, A. I., S. Richardson, and J. Mergeay. 2021. “Reeves’ Muntjac Populations Continue to Grow and Spread Across Great Britain and are Invading Continental Europe.” European Journal of Wildlife Research 67 (3): 1–10. https://doi.org/10.1007/s10344-021-01478-2.
  • Warton, D. I., and L. C. Shepherd. 2010. “Poisson Point Process Models Solve The“pseudo-Absence problem” for Presence-Only Data in Ecology.” The Annals of Applied Statistics 4 (3): 1383–1402. https://doi.org/10.1214/10-AOAS331.
  • Wilson, E., R. Wirz, and L. Byrne. 2021. “Transformation of Sitka Spruce Plantations to Continuous Cover Forestry at Dunranhill Forest, County Wicklow, Ireland.” SCOTTISH FORESTRY 75 (4): 33.
  • Yokoyama, M., K. Kaji, and M. Suzuki. 2000. “Food Habits of Sika Deer and Nutritional Value of Sika Deer Diets in Eastern Hokkaido, Japan.” Ecological Research 15 (3): 345–355. https://doi.org/10.1046/j.1440-1703.2000.00355.x.
  • Zhang, L., F. Huettmann, X. Zhang, S. Liu, P. Sun, Z. Yu, and C. Mi. 2019. “The Use of Classification and Regression Algorithms Using the Random Forests Method with Presence-Only Data to Model species’ Distribution.” MethodsX 6:2281–2292. https://doi.org/10.1016/j.mex.2019.09.035.