Inferring variance and invariance in multi-individual behavior of zebrafish (Danio rerio) responding to chemical stress

References

• Baganz D, Staaks G, Steinberg C. 1998. Impact of the cyanobacteria toxin, microcystin-lr on behaviour of zebrafish, Danio rerio. Water Res. 32:948–952. doi: 10.1016/S0043-1354(97)00207-8
   Web of Science ®Google Scholar
• Blaser R, Gerlai R. 2006. Behavioral phenotyping in zebrafish: comparison of three behavioral quantification methods. Behav Res Methods. 38:456–469. doi: 10.3758/BF03192800
   PubMed Web of Science ®Google Scholar
• Breder CM. 1954. Equations descriptive of fish schools and other animal aggregations. Ecology. 35:361–370. doi: 10.2307/1930099
   Web of Science ®Google Scholar
• Chon TS. 2011. Self-organizing maps applied to ecological sciences. Ecol Inform. 6:50–61. doi: 10.1016/j.ecoinf.2010.11.002
   Web of Science ®Google Scholar
• Chon TS, Chung N, Kwak IS, Kim JS, Koh SC, Lee SK, Leem JB, Cha EY. 2005. Movement behaviour of medaka (Oryzias latipes) in response to sublethal treatments of diazinon and cholinesterase activity in semi-natural conditions. Environ Monit Assess. 101:1–21.
   PubMed Web of Science ®Google Scholar
• Couzin I. 2007. Collective minds. Nature. 445:715–715. doi: 10.1038/445715a
   PubMed Web of Science ®Google Scholar
• Cucker F, Smale S. 2007. Emergent behavior in flocks. IEEE Trans Autom Control. 52:852–862. doi: 10.1109/TAC.2007.895842
   Web of Science ®Google Scholar
• Dray S, Royer-Carenzi M, Calenge C. 2010. The exploratory analysis of autocorrelation in animal-movement studies. Ecol Res. 25:673–681. doi: 10.1007/s11284-010-0701-7
   Web of Science ®Google Scholar
• Emlen JT. 1952. Flocking behavior in birds. The Auk. 69:160–170. doi: 10.2307/4081266
   Google Scholar
• Gerlai R, Lee V, Blaser R. 2006. Effects of acute and chronic ethanol exposure on the behavior of adult zebrafish (Danio rerio). Pharmacol Biochem Behav. 85:752–761. doi: 10.1016/j.pbb.2006.11.010
   PubMed Web of Science ®Google Scholar
• Griffiths SW, Magurran AE. 1997. Schooling preferences for familiar fish vary with group size in a wild guppy population. Proc R Soc Lond B. 264:547–551. doi: 10.1098/rspb.1997.0078
   Web of Science ®Google Scholar
• Herbert-Read JE, Perna A, Mann RP, Schaerf TM, Sumpter DJ, Ward AJ. 2011. Inferring the rules of interaction of shoaling fish. Proc Natl Acad Sci USA. 108:18726–18731. doi: 10.1073/pnas.1109355108
   PubMed Web of Science ®Google Scholar
• Hoare D, Couzin I, Godin JG, Krause J. 2004. Context-dependent group size choice in fish. Anim Behav. 67:155–164. doi: 10.1016/j.anbehav.2003.04.004
   Web of Science ®Google Scholar
• Jones FH. 1957. Rotation experiments with blind goldfish. J Exp Biol. 34:259–275.
   Web of Science ®Google Scholar
• Katz Y, Tunstrøm K, Ioannou CC, Huepe C, Couzin ID. 2011. Inferring the structure and dynamics of interactions in schooling fish. Proc Natl Acad Sci USA. 108:18720–18725. doi: 10.1073/pnas.1107583108
   PubMed Web of Science ®Google Scholar
• Kim CK, Kwak IS, Cha EY, Chon TS. 2006. Implementation of wavelets and artificial neural networks to detection of toxic response behavior of chironomids (Chironomidae: Diptera) for water quality monitoring. Ecol Model. 195:61–71. doi: 10.1016/j.ecolmodel.2005.11.010
   Web of Science ®Google Scholar
• Lawrence B, Smith R. 1989. Behavioral response of solitary fathead minnows, pimephales promelas, to alarm substance. J Chem Ecol. 15:209–219. doi: 10.1007/BF02027783
   PubMed Web of Science ®Google Scholar
• Lee SH, Ji CW, Chon TS. 2009. Change in spatial dispersion of Daphnia magna (Cladocera: Daphniidae) populations exposed to organophosphorus insecticide, diazinon. Environ Health Toxicol. 24:231–240.
   Google Scholar
• Lemly AD, Smith R. 1986. A behavioral assay for assessing effects of pollutants on fish chemoreception. Ecotoxicol Environ Saf. 11:210–218. doi: 10.1016/0147-6513(86)90065-5
   PubMed Web of Science ®Google Scholar
• Levin ED, Bencan Z, Cerutti DT. 2007. Anxiolytic effects of nicotine in zebrafish. Physiol Behav. 90:54–58. doi: 10.1016/j.physbeh.2006.08.026
   PubMed Web of Science ®Google Scholar
• Liu Y, Lee SH, Chon TS. 2011. Analysis of behavioral changes of zebrafish (Danio rerio) in response to formaldehyde using self-organizing map and a hidden Markov model. Ecol Modell. 222:2191–2201. doi: 10.1016/j.ecolmodel.2011.02.010
   Web of Science ®Google Scholar
• Massey Jr FJ. 1951. The Kolmogorov–Smirnov test for goodness of fit. J Am Stat Assoc. 46:68–78. doi: 10.1080/01621459.1951.10500769
   Web of Science ®Google Scholar
• Miller NY, Gerlai R. 2008. Oscillations in shoal cohesion in zebrafish (Danio rerio). Behav Brain Res. 193:148–151. doi: 10.1016/j.bbr.2008.05.004
   PubMed Web of Science ®Google Scholar
• Nagy M, Ákos Z, Biro D, Vicsek T. 2010. Hierarchical group dynamics in pigeon flocks. Nature. 464:890–893. doi: 10.1038/nature08891
   PubMed Web of Science ®Google Scholar
• Nguyen TV, Liu Y, Jung IH, Chon TS, Lee SH. 2011. Unraveling markov processes in movement patterns of indicator species in response to chemical stressors. Mod Phys Lett B. 25:1143–1149. doi: 10.1142/S0217984911026851
   Web of Science ®Google Scholar
• Niwa HS. 1994. Self-organizing dynamic model of fish schooling. J Theor Biol. 171:123–136. doi: 10.1006/jtbi.1994.1218
   Web of Science ®Google Scholar
• Orfanidis SJ. 1985. Optimum signal processing: an introduction. New York: Macmillan.
   Google Scholar
• Park YS, Chung NI, Choi KH, Cha EY, Lee SK, Chon TS. 2005. Computational characterization of behavioral response of medaka (Oryzias latipes) treated with diazinon. Aquatic Toxicol. 71:215–228. doi: 10.1016/j.aquatox.2004.11.002
   PubMed Web of Science ®Google Scholar
• Quach QK, Chon TS, Kim H, Van Nguyen T. 2013. One and two-individual movements of fish after chemical exposure. J Kor Phys Soc. 63:18–27. doi: 10.3938/jkps.63.18
   Web of Science ®Google Scholar
• Rabiner, LR. 1989. A tutorial on hidden Markov models and selected applications in speech recognition. Proc IEEE 77: 257–286. doi: 10.1109/5.18626
   Web of Science ®Google Scholar
• Suzuki K, Takagi T, Hiraishi T. 2003. Video analysis of fish schooling behavior in finite space using a mathematical model. Fish Res. 60:3–10. doi: 10.1016/S0165-7836(02)00081-4
   Web of Science ®Google Scholar
• Toner J, Tu Y. 1998. Flocks, herds, and schools: a quantitative theory of flocking. Phys Rev E. 58:4828–4858. doi: 10.1103/PhysRevE.58.4828
   Web of Science ®Google Scholar
• Vicsek T, Czirók A, Ben-Jacob E, Cohen I, Shochet O. 1995. Novel type of phase transition in a system of self-driven particles. Phys Rev Lett. 75:1226–1229. doi: 10.1103/PhysRevLett.75.1226
   PubMed Web of Science ®Google Scholar
• Weis P, Weis J. 1974. Schooling behavior of Menidia medidia in the presence of the insecticide Sevin (Carbaryl). Mar Biol. 28:261–263. doi: 10.1007/BF00388493
   Web of Science ®Google Scholar
• Xia C, Li Y, Chon TS, Lee JM. 2009. A stereo vision based method for autonomous spray of pesticides to plant leaves. Proceedings of the International Symposium on Industrial Electronics, ISIE 2009: IEEE.
   Google Scholar