1,384
Views
1
CrossRef citations to date
0
Altmetric
Original Article

Cross-comparison of microbiota in the oropharynx, hypopharyngeal squamous cell carcinoma and their adjacent tissues through quantitative microbiome profiling

, , , , , , & show all
Article: 2073860 | Received 14 Jan 2022, Accepted 02 May 2022, Published online: 10 May 2022

References

  • Garneau JC, Bakst RL, Miles BA. Hypopharyngeal cancer: a state of the art review. Oral Oncol. 2018;86:244–13.
  • de Martel C, Georges D, Bray F, et al. Global burden of cancer attributable to infections in 2018: a worldwide incidence analysis. Lancet Glob Health. 2020;8(2):e180–e190.
  • Li S, Liu J, Zheng X, et al. Tumorigenic bacteria in colorectal cancer: mechanisms and treatments. Cancer Biology and Medicine 2021, 19(2):147– 162. DOI:10.20892/j.issn.2095-3941.2020.0651.
  • Caporaso JG, Lauber CL, Walters WA, et al. Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME J. 2012;6(8):1621–1624.
  • Ghurye JS, Cepeda-Espinoza V, Pop M. Metagenomic assembly: overview, challenges and applications. Yale J Biol Med. 2016;89(3):353–362.
  • Schriefer AE, Cliften PF, Hibberd MC, et al. A multi-amplicon 16S rRNA sequencing and analysis method for improved taxonomic profiling of bacterial communities. J Microbiol Methods. 2018;154:6–13.
  • Gloor GB, Macklaim JM, Pawlowsky-Glahn V, et al. Microbiome datasets are compositional: and this is not optional. Front Microbiol. 2017;8:2224.
  • Vandeputte D, Kathagen G, D Hoe K, et al. Quantitative microbiome profiling links gut community variation to microbial load. Nature. 2017;551(7681):507–511.
  • Galazzo G, van Best N, Benedikter BJ, et al. How to count our microbes? The effect of different quantitative microbiome profiling approaches. Front Cell Infect MI. 2020;10:403.
  • Jian C, Luukkonen P, Yki-Järvinen H, et al. Quantitative PCR provides a simple and accessible method for quantitative microbiota profiling. PLOS One. 2020;15(1):e227285.
  • Lin Y, Gifford S, Ducklow H, et al. Towards quantitative microbiome community profiling using internal standards. Appl Environ Microb. 2019;85(5). DOI:10.1128/AEM.02634-18
  • Rui M, Zhang X, Huang J, et al. The baseline oral microbiota predicts the response of locally advanced oral squamous cell carcinoma patients to induction chemotherapy: a prospective longitudinal study. Radiother Oncol. 2021;164:83–91.
  • De Martin A, Lütge M, Stanossek Y, et al. Distinct microbial communities colonize tonsillar squamous cell carcinoma. Oncoimmunology. 2021;10(1):1945202.
  • Dong Z, Zhang C, Zhao Q, et al. Alterations of bacterial communities of vocal cord mucous membrane increases the risk for glottic laryngeal squamous cell carcinoma. J Cancer. 2021;12(13):4049–4063.
  • Huang SH, O’Sullivan B. Overview of the 8th edition TNM classification for head and neck cancer. Curr Treat Options Oncol. 2017;18(7):40.
  • Hsueh CY, Gong H, Cong N, et al. Throat microbial community structure and functional changes in postsurgery laryngeal carcinoma patients. Appl Environ Microbiol. 2020;86(24). DOI:10.1128/AEM.01849-20.
  • Douglas GM, Maffei VJ, Zaneveld JR, et al. PICRUSt2 for prediction of metagenome functions. Nat Biotechnol. 2020;38(6):685–688.
  • Chen T, Chen X, Zhang S, et al. The genome sequence archive family: toward explosive data growth and diverse data types. Genomics Proteomics Bioinformatics. 2021;19(4):578–583.
  • Xue Y, Bao Y, Zhang Z, et al. Database resources of the national genomics data center, China national center for bioinformation in 2021. Nucleic Acids Res. 2021;49(D1):D18–D28.
  • Timbang MR, Sim MW, Bewley AF, et al. HPV-related oropharyngeal cancer: a review on burden of the disease and opportunities for prevention and early detection. Hum Vaccin Immunother. 2019;15(7–8):1920–1928.
  • Abdel-Rahman O. Prognostic value of HPV status among patients with hypopharyngeal carcinoma: a population-based study. Clin Transl Oncol. 2020;22(9):1645–1650.
  • Gao L, Xu T, Huang G, et al. Oral microbiomes: more and more importance in oral cavity and whole body. Protein Cell. 2018;9(5):488–500.
  • Chen C, Li T, Chen G, et al. Commensal relationship of three bifidobacterial species leads to increase ofBifidobacterium in vitro fermentation of sialylated immunoglobulin G by human gut microbiota. J Agr Food Chem. 2020;68(34):9110–9119.
  • Jiang S, Yu Y, Gao R, et al. High-throughput absolute quantification sequencing reveals the effect of different fertilizer applications on bacterial community in a tomato cultivated coastal saline soil. Sci Total Environ. 2019;687:601–609.
  • Tan X, Yang Y, Liu Y, et al. The synergy of porous substrates and functional genera for efficient nutrients removal at low temperature in a pilot-scale two-stage tidal flow constructed wetland. Bioresour Technol. 2021;319:124135.
  • Mohsen A, Park J, Chen Y, et al. Impact of quality trimming on the efficiency of reads joining and diversity analysis of Illumina paired-end reads in the context of QIIME1 and QIIME2 microbiome analysis frameworks. BMC Bioinformatics. 2019;20(1):581.
  • Sarkar P, Malik S, Laha S, et al. Dysbiosis of oral microbiota during oral squamous cell carcinoma development. Front Oncol. 2021;11:614448.
  • Shang F, Liu H. Fusobacterium nucleatum and colorectal cancer: a review. World J Gastro Oncol. 2018;10(3):71–81.
  • Ganly I, Yang L, Giese RA, et al. Periodontal pathogens are a risk factor of oral cavity squamous cell carcinoma, independent of tobacco and alcohol and human papillomavirus. Int J Cancer. 2019;145(3):775–784.
  • Gong H, Wang B, Shi Y, et al. Composition and abundance of microbiota in the pharynx in patients with laryngeal carcinoma and vocal cord polyps. J Microbiol. 2017;55(8):648–654.
  • Wang H, Funchain P, Bebek G, et al. Microbiomic differences in tumor and paired-normal tissue in head and neck squamous cell carcinomas. Genome Med. 2017;9(1):14.
  • Yang C, Yeh Y, Yu H, et al. Oral microbiota community dynamics associated with oral squamous cell carcinoma staging. Front Microbiol. 2018;9:862.
  • Lu H, Ren Z, Li A, et al. Tongue coating microbiome data distinguish patients with pancreatic head cancer from healthy controls. J Oral Microbiol. 2019;11(1):1563409.
  • Kawakita D, Matsuo K. Alcohol and head and neck cancer. Cancer Metast Rev. 2017;36(3):425–434.
  • Lau HC, Hsueh CY, Gong H, et al. Oropharynx microbiota transitions in hypopharyngeal carcinoma treatment of induced chemotherapy followed by surgery. BMC Microbiol. 2021;21(1):310.
  • Ko Y, Lee EM, Park JC, et al. Salivary microbiota in periodontal health and disease and their changes following nonsurgical periodontal treatment. J Periodontal Implant Sci. 2020;50(3):171–182.
  • Osman MA, Neoh HM, Ab MN, et al. Parvimonas micra, Peptostreptococcus stomatis, Fusobacterium nucleatum and Akkermansia muciniphila as a four-bacteria biomarker panel of colorectal cancer. Sci Rep. 2021;11(1):2925.
  • Zhao H, Chu M, Huang Z, et al. Variations in oral microbiota associated with oral cancer. Sci Rep. 2017;7(1):11773.
  • Horiuchi A, Kokubu E, Warita T, et al. Synergistic biofilm formation by Parvimonas micra and Fusobacterium nucleatum. Anaerobe. 2020;62:102100.
  • Metsaniitty M, Hasnat S, Salo T, et al. Oral microbiota-a new frontier in the pathogenesis and management of head and neck cancers. Cancers (Basel). 2021;14(1):46.
  • Hashemi GN, Heidarzadeh S, Jahangiri S, et al. Fusobacterium nucleatum and colorectal cancer: a mechanistic overview. J Cell Physiol. 2019;234(3):2337–2344.
  • Koopman M, Kortman GAM, Mekenkamp L, et al. Deficient mismatch repair system in patients with sporadic advanced colorectal cancer. Br J Cancer. 2009;100(2):266–273.
  • Vasan K, Satgunaseelan L, Anand S, et al. Tumour mismatch repair protein loss is associated with advanced stage in oral cavity squamous cell carcinoma. Pathology. 2019;51(7):688–695.
  • Yoshida GJ. Metabolic reprogramming: the emerging concept and associated therapeutic strategies. J Exp Clin Canc Res. 2015;34(1):111.