366
Views
1
CrossRef citations to date
0
Altmetric
Original Article

Origin and evolutionary dynamics of Hepatitis B virus (HBV) genotype E in Madagascar

, , , , , , , , , , & show all

References

  • Zehender G, Ebranati E, Gabanelli E, et al. Enigmatic origin of hepatitis B virus: an ancient travelling companion or a recent encounter? World J Gastroenterol. 2014;20:7622–34. 10.3748/wjg.v20.i24.7622
  • Paraskevis D, Magiorkinis G, Magiorkinis E, et al. Dating the origin and dispersal of hepatitis B virus infection in humans and primates. Hepatology. 2013;57:908–16. 10.1002/hep.26079
  • Andernach IE, Hunewald OE, Muller CP. Bayesian inference of the evolution of HBV/E. PLoS One. 2013;8:e81690. 10.1371/journal.pone.0081690
  • Andernach IE, Hübschen JM, Muller CP. Hepatitis B virus: the genotype E puzzle. Rev Med Virol. 2009;19:231–40. 10.1002/rmv.v19:4
  • Olinger CM, Venard V, Njayou M, et al. Phylogenetic analysis of the precore/core gene of hepatitis B virus genotypes E and A in West Africa: new subtypes, mixed infections and recombinations. J Gen Virol. 2006;87:1163–73. 10.1099/vir.0.81614-0
  • Mulders MN, Venard V, Njayou M, et al. Low genetic diversity despite hyperendemicity of hepatitis B virus genotype E throughout West Africa. J Infect Dis. 2004;190:400–8. 10.1086/jid.2004.190.issue-2
  • Bekondi C, Olinger CM, Boua N, et al. Central African republic is part of the West-African hepatitis B virus genotype E crescent. J Clin Virol. 2007;40:31–7. 10.1016/j.jcv.2007.05.009
  • Odemuyiwa SO, Mulders MN, Oyedele OI, et al. Phylogenetic analysis of new hepatitis B virus isolates from Nigeria supports endemicity of genotype E in West Africa. J Med Virol. 2001;65:463–9. 10.1002/(ISSN)1096-9071
  • Vray M, Debonne JM, Sire JM, et al. Molecular epidemiology of hepatitis B virus in Dakar, Sénégal. J Med Virol. 2006;78:329–34. 10.1002/(ISSN)1096-9071
  • Suzuki S, Sugauchi F, Orito E, et al. Distribution of hepatitis B virus (HBV) genotypes among HBV carriers in the cote d'Ivoire: complete genome sequence and phylogenetic relatedness of HBV genotype E. J Med Virol. 2003;69:459–65. 10.1002/(ISSN)1096-9071
  • Candotti D, Opare-Sem O, Rezvan H, et al. Molecular and serological characterization of hepatitis B virus in deferred Ghanaian blood donors with and without elevated alanine aminotransferase. J Viral Hepat. 2006;13:715–24. 10.1111/jvh.2006.13.issue-11
  • Dumpis U, Holmes EC, Mendy M, et al. Transmission of hepatitis B virus infection in Gambian families revealed by phylogenetic analysis. J Hepatol. 2001;35:99–104. 10.1016/S0168-8278(01)00064-2
  • Kramvis A, Kew MC. Epidemiology of hepatitis B virus in Africa, its genotypes and clinical associations of genotypes. Hepatol Res. 2007 Jul;37(s1):S9–S19. 10.1111/hep.2007.37.issue-s1
  • Kurbanov F, Tanaka Y, Fujiwara K, et al. A new subtype (subgenotype) Ac (A3) of hepatitis B virus and recombination between genotypes A and E in Cameroon. J Gen Virol. 2005;86:2047–56. 10.1099/vir.0.80922-0
  • Kramvis A, Restorp K, Norder H, et al. Full genome analysis of hepatitis B virus genotype E strains from South-Western Africa and madagascar reveals low genetic variability. J Med Virol. 2005;77:47–52. 10.1002/(ISSN)1096-9071
  • Bahri O, Cheikh I, Hajji N, et al. Hepatitis B genotypes, precore and core promoter mutants circulating in Tunisia. J Med Virol. 2006;78:353–7. 10.1002/(ISSN)1096-9071
  • Halfon P, Bourliere M, Pol S, et al. Multicentre study of hepatitis B virus genotypes in France: correlation with liver fibrosis and hepatitis B e antigen status. J Viral Hepat. 2006;13:329–35. 10.1111/jvh.2006.13.issue-5
  • Palumbo E. Immigration and hepatitis B virus in Italy. Current state and perspectives. Recenti Prog Med. 2007;98:548–52.
  • Toro C, Jiménez V, Rodríguez C, et al. Molecular and epidemiological characteristics of blood-borne virus infections among recent immigrants in Spain. J Med Virol. 2006;78:1599–608. 10.1002/(ISSN)1096-9071
  • Liu HF, Sokal E, Goubau P. Wide variety of genotypes and geographic origins of hepatitis B virus in Belgian children. J Pediatr Gastroenterol Nutr. 2001;32:274–47. 10.1097/00005176-200103000-00008
  • van Steenbergen JE, Niesters HG, Op de Coul EL, et al. Molecular epidemiology of hepatitis B virus in Amsterdam 1992–1997. J Med Virol. 2002;66:159–65. 10.1002/(ISSN)1096-9071
  • Mathet VL, Cuestas ML, Ruiz V, et al. Detection of hepatitis B virus (HBV) genotype E carried–even in the presence of high titers of anti-HBs antibodies–by an Argentinean patient of African descent who had received vaccination against HBV. J Clin Microbiol. 2006;44:3435–9. 10.1128/JCM.00866-06
  • Sitnik R, Sette Jr H Jr, Santana RA, et al. Hepatitis B virus genotype E detected in Brazil in an African patient who is a frequent traveler. Braz J Med Biol Res. 2007;40:1689–92. 10.1590/S0100-879X2006005000185
  • Kato H, Gish RG, Bzowej N, et al. Eight genotypes (A-H) of hepatitis B virus infecting patients from San Francisco and their demographic, clinical, and virological characteristics. J Med Virol. 2004;73:516–21. 10.1002/(ISSN)1096-9071
  • Boisier P, Rabarijaona L, Piollet M, et al. Hepatitis B virus infection in general population in Madagascar: evidence for different epidemiological patterns in urban and in rural areas. Epidemiol Infect. 1996;117:133–7. 10.1017/S0950268800001229
  • Migliani R, Rousset D, Rakoto-Andrianarivelo M, et al. Hepatitis B virus infection: a public health problem in Madagascar. Arch Inst Pasteur Madagascar. 2000;66:50–4.
  • Migliani R, Rakoto Andrianarivelo M, Rousset D, et al. Seroprevalence of viral hepatitis B in the city of Mahajanga, Madagascar in 1999. Med Trop. 2000;60:146–50.
  • Andriamandimby SF, Lo Presti A, Lai A, et al. Genetic diversity of hepatitis B virus (HBV) in Madagascar. J Med Virol. 2016 Dec;88(12):2138–44. 10.1002/jmv.v88.12
  • Posada D, Crandall KA. MODELTEST: testing the model of DNA substitution. Bioinformatics. 1998;14:817–8. 10.1093/bioinformatics/14.9.817
  • Kumar S, Stecher G, Tamura K. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol. 2016;33:1870–4. 10.1093/molbev/msw054
  • Drummond AJ, Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol. 2007;7:214. 10.1186/1471-2148-7-214
  • Baele G, Lemey P. Bayesian evolutionary model testing in the phylogenomics era: matching model complexity with computational efficiency. Bioinformatics. 2013 Aug 15;29(16):1970–9. 10.1093/bioinformatics/btt340
  • Baele G, Li WL, Drummond AJ, et al. Accurate model selection of relaxed molecular clocks in bayesian phylogenetics. Mol Biol Evol. 2013  Feb;30(2):239-43.
  • Slatkin M, Maddison WP. A cladistic measure of gene flow inferred from the phylogenies of alleles. Genetics. 1989;123:603–13.
  • Dupinay T, Restorp K, Leutscher P, et al. High prevalence of hepatitis B virus genotype E in Northern Madagascar indicates a West-African lineage. J Med Virol. 2010;82:1515–26. 10.1002/jmv.v82:9
  • Torres C, Leone FG, Pezzano SC, et al. New perspectives on the evolutionary history of hepatitis B virus genotype F. Mol Phylogenet Evol. 2011;59:114–22. 10.1016/j.ympev.2011.01.010
  • Paraskevis D, Magiorkinis G, Magiorkinis E, et al. Dating the origin and dispersal of hepatitis B virus infection in humans and primates. Hepatology. 2013;57:908–16. 10.1002/hep.26079
  • O’Connell James F, Allen Jim. Dating the colonization of Sahul (Pleistocene Australia–New Guinea): a review of recent research. J. Archaeol. Sci. 2004;31:835–53. 10.1016/j.jas.2003.11.005
  • Roberts RG, Jones R, Smith MA. Thermoluminescence dating of a 50,000-year-old human occupation site in northern Australia. Nature. 1990;345:153–6. 10.1038/345153a0
  • Markov PV, Pepin J, Frost E, et al. Phylogeography and molecular epidemiology of hepatitis C virus genotype 2 in Africa. J Gen Virol. 2009;90:2086–96. 10.1099/vir.0.011569-0
  • Clayton A. France, soldiers and Africa. London: Brassey’s Defence Publishers; 1988.
  • Echenberg M. Colonial conscripts: the Tirailleurs Se′ne′galais in French West Africa, 1857–1960. Portsmouth, NH: Heinemann Educational Books; 1991.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.