Mirna biogenesis pathway is differentially regulated during adipose derived stromal/stem cell differentiation

References

• Cinti S. The adipose organ. Fantuzzi G, Mazzone T ( Eds. ed.), Adipose Tissue and Adipokines in Health and Disease. Humana Press, Nutrition and Health; 2007.p. 3–19.
   Google Scholar
• Chen Q, Shou P, Zheng C, et al. Fate decision of Mesenchymal stem cells: Adipocytes or Osteoblasts. Cell Death Differ. 2016;23(7):1128–1139. doi:10.1038/cdd.2015.168.
   PubMed Web of Science ®Google Scholar
• Huang C, Geng J, Jiang S. MicroRNAs in regulation of osteogenic differentiation of Mesenchymal stem cells. Cell Tissue Res. 2016
   Web of Science ®Google Scholar
• Shi C, Huang F, Gu X, et al. Adipogenic miRNA and meta-signature miRNAs involved in human adipocyte differentiation and obesity. Oncotarget. 2016;7(26):40830–40845. doi:10.18632/oncotarget.8518.
   PubMedGoogle Scholar
• Martin EC, Qureshi AT, Dasa V, et al. MicroRNA regulation of stem cell differentiation and disease of the bone and adipose tissue: Perspectives on miRNA biogenesis and cellular transcriptome. Biochimie. 2016;124:98–111. doi:10.1016/j.biochi.2015.02.012.
   PubMed Web of Science ®Google Scholar
• Karbiener M, Fischer C, Nowitsch S, et al. microRNA miR-27b impairs human adipocyte differentiation and targets PPARgamma. Biochem Biophys Res Commun. 2009;390(2):247–51. doi:10.1016/j.bbrc.2009.09.098.
   PubMed Web of Science ®Google Scholar
• McGregor RA, Choi MS. microRNAs in regulation of adipogenesis and obesity. Curr Mol Med. 2011;11(4):304–316. doi:10.2174/156652411795677990.
   PubMed Web of Science ®Google Scholar
• Andersen DC, Jensen CH, Schneider M, et al. MicroRNA-15a fine-tunes the levels of delta-like 1 Homolog (DLK1) in Proliferating 3T3-L1 Preadipovytes. Exp Cell Res. 2010;316(10):1681–91. doi:10.1016/j.yexcr.2010.04.002.
   PubMed Web of Science ®Google Scholar
• Huang J, Zhao L, Xing L, et al. microRNA-204 regulates Runx2 protein expression and mesenchymal progenitor cell differentiation. Stem Cells. 2010;28(2):357–364.
   PubMed Web of Science ®Google Scholar
• Xu S, Santini GC, Veirman KD, et al. Upregulation of miR-135b is involved in the impaired osteogenic differentiation of mesenchymal stem cells derived from multiple myeloma patients. PLOS One. 2013;8(11):e79752. doi:10.1371/journal.pone.0079752.
   PubMed Web of Science ®Google Scholar
• Winter J, Jung S, Keller S, et al. Many roads to maturity: microRNA biogenesis pathways and their regulation. Nat Cell Biol. 2009;11(3):228–34. doi:10.1038/ncb0309-228.
   PubMed Web of Science ®Google Scholar
• MacFarlane LA, Murphy PR. MicroRNA: Biogenesis, function, and role in cancer. Curr Genomics. 2010;11(7):537–561. doi:10.2174/138920210793175895.
   PubMed Web of Science ®Google Scholar
• Winter J, Diederichs S. Argonaute-3 Activates the let-7a Passenger Strand microRNA. RNA Biol. 2013;10(10):1631–1643. doi:10.4161/rna.26424.
   PubMed Web of Science ®Google Scholar
• Martin EC, Cogner AK, Yan TJ, et al. MicroRNA-335-5p and -3p synergize to inhibit estrogen receptor alpha expression and promote tamoxifen resistance. FEBS Letters. 2017;591(2):382–392. doi:10.1002/1873-3468.12538.
   PubMed Web of Science ®Google Scholar
• Rhodes LV, Martin EC, Segar HC, et al. Dual Regulation by microRNA-200b-3p and microRNA-200b-5p in the inhibition of epithelial-to-mesenchymal transition in -triple-negative breast cancer. Oncotarget. 2015;6(18):16638–52. doi:10.18632/oncotarget.3184.
   PubMedGoogle Scholar
• Martin EC, Elliott S, Rhodes LV, et al. Preferential star strand biogenesis of pre-mir-24-2 targets PKC-alpha and suppresses cell survival in MCF-7 breast cancer cells. Mol Carcinog. 2014;53(1):38–48. doi:10.1002/mc.21946.
   PubMed Web of Science ®Google Scholar
• Wang Q, Li YC, Wang J, et al. miR-17-92 cluster accelerates adipocyte differentiation by negatively regulating tumor-suppressor Rb2/p130. Proc Natl Acad Sci USA. 2008;105(8):2889–2894. doi:10.1073/pnas.0800178105.
   PubMed Web of Science ®Google Scholar
• Gaur T, Hussain R, Mudhasani I, et al. Dicer inactivation in osteoprogenitor cells compromises fetal survival and bone formation, while excision in differentiated osteoblasts increases bone mass in the adult mouse. Dev Biol. 2010;340:10–21. doi:10.1016/j.ydbio.2010.01.008.
   PubMed Web of Science ®Google Scholar
• Cogner AK, Martin EC, Yan TJ, et al. Argonaute 2 expression correlates with a Luminal B breast cancer subtype and induces estrogen receptor alpha isoform variation. Non-Coding RNA. 2016;2(3):8. doi:10.3390/ncrna2030008.
   Google Scholar
• Adams BD, Claffey KP, White BA. Argonaute-2 expression is regulated by epidermal growth factor receptor and mitogen-activated protein kinase signaling and correlates with a transformed phenotype in breast cancer cells. Endocrinology. 2009;150(1):14–23. doi:10.1210/en.2008-0984.
   PubMed Web of Science ®Google Scholar
• Melo SA, Moutinho C, Ropero S, et al. A genetic defect in exportin-5 traps precursor microRNAs in the nucleus of cancer cells. Cancer Cell. 2010;18(4):303–15. doi:10.1016/j.ccr.2010.09.007.
   PubMed Web of Science ®Google Scholar
• Huang JT, Wang J, Srivastava V, et al. MicroRNA machinery genes as novel biomarkers for cancer. Front Oncology. 2014;4:113. doi:10.3389/fonc.2014.00113.
   PubMedGoogle Scholar
• Martin EC, Qureshi A, Dasa V, et al. MicroRNA regulation of stem cell differentiation and diseases of the bone and adipose tissue: Perspectives on miRNA biogenesis and cellular transcriptome. Biochime. 2015;124:98–111. doi: 10.1016/j.biochi.2015.02.012
   PubMed Web of Science ®Google Scholar
• Kent WJ, Sugnet CW, Furey TS, et al. The Human Genome Browser at UCSC. Genome Res. 2002;12:996–1006. doi:10.1101/gr.229102.
   PubMed Web of Science ®Google Scholar
• Karolchik D, Barber GP, Casper J, et al. The UCSC Genome Browser Database:2014 Update. Nucleic Acid Res. 2014;42:D764–770. doi:10.1093/nar/gkt1168.
   PubMed Web of Science ®Google Scholar
• Fejes-Toth K, Sotirova V, Sachidanandam R, et al. Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs. Nature. 2009;457(7232):1028–32. doi:10.1038/nature07759.
   PubMed Web of Science ®Google Scholar
• Langmead B, Trapnell C, Pop M, et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 2009;10(3):R25. doi:10.1186/gb-2009-10-3-r25.
   PubMed Web of Science ®Google Scholar
• Pink RC, Samuel P, Massa D, et al. The passenger strand, miR-21-3p, plays a role in mediating cisplatin resistance in ovarian cancer cells. Gynocol Oncol. 2015;137(1):143–51. doi:10.1016/j.ygyno.2014.12.042.
   PubMed Web of Science ®Google Scholar
• Tan GC, Dibb N. IsomiRs have functional importance. Malays Pathol. 2015;37(2):73–81.
   PubMed Web of Science ®Google Scholar
• Frith JE, Porrello ER, Cooper-White JJ. Concise review: New frontiers in microRNA-Base tissue regeneration. Stem Cells Transl Med. 2014;3(8):969–976. doi:10.5966/sctm.2014-0032.
   PubMed Web of Science ®Google Scholar
• Yao S. MicroRNA biogenesis and their functions in regulating stem cell potency and differentiation. Biological Procedures Online. 2016;18:8. doi:10.1186/s12575-016-0037-y.
   PubMed Web of Science ®Google Scholar
• SChoolmeesters A, Eklund T, Leake D, et al. Functional profiling reveals critical role for miRNA in differentiation of human mesenchymal stem cells. PLoS One. 2009;4(5):e5605. doi:10.1371/journal.pone.0005605.
   PubMed Web of Science ®Google Scholar
• Mudhasani R, Imbalzano AN, Jones SN. An essential role for dicer in adipocyte differentiation. J Cell Biochem. 2010;110(4): 812–816. doi:10.1002/jcb.22625.
   PubMed Web of Science ®Google Scholar
• Wang Q, Li YC, Wang J, et al. miR-17-92 cluster accelerates adipocyte differentiation by negatively regulating tumor-suppressor Rb2/p130. Proc Natl Acad S I USA. 2008;105(8):2889–2894. doi:10.1073/pnas.0800178105.
   PubMed Web of Science ®Google Scholar
• Winter J, Diederichs S. Argonaute proteins regulate microRNA stability: Increased microRNA abundance by Argonaute proteins is due to microRNA stabilization. RNA Biol. 2011;8(6):1149–57. doi:10.4161/rna.8.6.17665.
   PubMed Web of Science ®Google Scholar
• Strega-Roslan J, Koscianska E, Kozlowski P, et al. The Role of the Precursor Structure in the Biogenesis of microRNA. Cell Mol Life Sci. 2011;68:2859–2871. doi:10.1007/s00018-011-0726-2.
   PubMed Web of Science ®Google Scholar
• Kozomara A, Griffiths-Jones S. miRBase: annotating high confidence microRNAs using deep sequencing data. NAR. 2014;42:D68–D73. doi:10.1093/nar/gkt1181.
   PubMed Web of Science ®Google Scholar
• Kozomara A, Griffiths-Jones S. miRBase: integrating microRNA annotation and deep-sequencing data. NAR. 2011;39:D152–D157. doi:10.1093/nar/gkq1027.
   PubMed Web of Science ®Google Scholar
• Griffiths-Jones S, Saini HK, van Dongen S, et al. miRBase: tools for microRNA genomics. NAR. 2008;36:D154–D158. doi:10.1093/nar/gkm952.
   PubMed Web of Science ®Google Scholar
• Griffiths-Jones S, Grocock RJ, van Dongen S, et al. miRBase: microRNA sequences, targets and gene nomenclature. NAR. 2006;34:D140–D144. doi:10.1093/nar/gkj112.
   PubMed Web of Science ®Google Scholar
• Griffiths-Jones S. The microRNA registry. NAR. 2004;32:D109–D111. doi:10.1093/nar/gkh023.
   PubMed Web of Science ®Google Scholar