Proteomic identification of germline proteins in Caenorhabditis elegans

References

• Petronczki M, Siomos MF, Nasmyth K. Un ménage à quatre: the molecular biology of chromosome segregation in meiosis. Cell 2003; 112:423-40; PMID:12600308; http://dx.doi.org/10.1016/S0092-8674(03)00083-7
   PubMed Web of Science ®Google Scholar
• Hassold T, Hunt P. To err (meiotically) is human: the genesis of human aneuploidy. Nat Rev Genet 2001; 2:280-91; PMID:11283700; http://dx.doi.org/10.1038/35066065
   PubMed Web of Science ®Google Scholar
• Villeneuve AM, Hillers KJ. Whence meiosis? Cell 2001; 106:647-50; PMID:11572770; http://dx.doi.org/10.1016/S0092-8674(01)00500-1
   PubMed Web of Science ®Google Scholar
• Roeder GS. Meiotic chromosomes: it takes two to tango. Genes Dev 1997; 11:2600-21; PMID:9334324; http://dx.doi.org/10.1101/gad.11.20.2600
   PubMed Web of Science ®Google Scholar
• Hubbard EJA, Greenstein D. Introduction to the germ line. WormBook 2005; 1:1-4; PMID:18050415
   PubMedGoogle Scholar
• Beanan MJ, Strome S. Characterization of a germ-line proliferation mutation in C. elegans. Development 1992; 116:755-66; PMID:1289064
   PubMed Web of Science ®Google Scholar
• Crittenden SL, Leonhard KA, Byrd DT, Kimble J. Cellular analyses of the mitotic region in the Caenorhabditis elegans adult germ line. Mol Biol Cell 2006; 17:3051-61; PMID:16672375; http://dx.doi.org/10.1091/mbc.E06-03-0170
   PubMed Web of Science ®Google Scholar
• Reinke V, Smith HE, Nance J, Wang J, Van Doren C, Begley R, Jones SJ, Davis EB, Scherer S, Ward S, et al. A global profile of germline gene expression in C. elegans. Mol Cell 2000; 6:605-16; PMID:11030340
   PubMed Web of Science ®Google Scholar
• Reinke V, Gil IS, Ward S, Kazmer K. Genome-wide germline-enriched and sex-biased expression profiles in Caenorhabditis elegans. Development 2004; 131:311-23; PMID:14668411; http://dx.doi.org/10.1242/dev.00914
   PubMed Web of Science ®Google Scholar
• Wang X, Zhao Y, Wong K, Ehlers P, Kohara Y, Jones SJ, Marra MA, Holt RA, Moerman DG, Hansen D. Identification of genes expressed in the hermaphrodite germ line of C. elegans using SAGE. BMC Genomics 2009; 10:213; PMID:19426519; http://dx.doi.org/10.1186/1471-2164-10-213
   PubMed Web of Science ®Google Scholar
• De Sousa Abreu R, Penalva LO, Marcotte EM, Vogel C. Global signatures of protein and mRNA expression levels. Mol Biosyst 2009; 5:1512-26; PMID:20023718
   PubMed Web of Science ®Google Scholar
• Page SL, Hawley RS. The genetics and molecular biology of the synaptonemal complex. Annu Rev Cell Dev Biol 2004; 20:525-58; PMID:15473851; http://dx.doi.org/10.1146/annurev.cellbio.19.111301.155141
   PubMed Web of Science ®Google Scholar
• Krijgsveld J, Ketting RF, Mahmoudi T, Johansen J, Artal-Sanz M, Verrijzer CP, Plasterk RHA, Heck AJR. Metabolic labeling of C. elegans and D. melanogaster for quantitative proteomics. Nat Biotechnol 2003; 21:927-31; PMID:12858183; http://dx.doi.org/10.1038/nbt848
   PubMed Web of Science ®Google Scholar
• Bantscheff M, Ringel B, Madi A, Schnabel R, Glocker MO, Thiesen H-J. Differential proteome analysis and mass spectrometric characterization of germ line development-related proteins of Caenorhabditis elegans. Proteomics 2004; 4:2283-95; PMID:15274122; http://dx.doi.org/10.1002/pmic.200400807
   PubMedGoogle Scholar
• Chu DS, Liu H, Nix P, Wu TF, Ralston EJ, Yates JR, Meyer BJ. Sperm chromatin proteomics identifies evolutionarily conserved fertility factors. Nature 2006; 443:101-5; PMID:16943775; http://dx.doi.org/10.1038/nature05050
   PubMed Web of Science ®Google Scholar
• Chik JK, Schriemer DC, Childs SJ, McGhee JD. Proteome of the Caenorhabditis elegans oocyte. J Proteome Res 2011; 10:2300-5; PMID:21452892; http://dx.doi.org/10.1021/pr101124f
   PubMedGoogle Scholar
• Harris TW, Baran J, Bieri T, Cabunoc A, Chan J, Chen WJ, Davis P, Done J, Grove C, Howe K, et al. WormBase 2014: new views of curated biology. Nucleic Acids Res 2014; 42:D789-93; PMID:24194605; http://dx.doi.org/10.1093/nar/gkt1063
   PubMed Web of Science ®Google Scholar
• Grassl J, Scaife C, Polden J, Daly CN, Iacovella MG, Dunn MJ, Clyne RK. Analysis of the budding yeast pH 4-7 proteome in meiosis. Proteomics 2010; 10:506-19; PMID:20029842; http://dx.doi.org/10.1002/pmic.200900561
   PubMed Web of Science ®Google Scholar
• Scaife C, Mowlds P, Grassl J, Polden J, Daly CN, Wynne K, Dunn MJ, Clyne RK. 2-D DIGE analysis of the budding yeast pH 6-11 proteome in meiosis. Proteomics 2010; 10:4401-14; PMID:21136594; http://dx.doi.org/10.1002/pmic.201000376
   PubMedGoogle Scholar
• Killian DJ, Hubbard EJA. Caenorhabditis elegans germline patterning requires coordinated development of the somatic gonadal sheath and the germ line. Dev Biol 2005; 279:322-35; PMID:15733661; http://dx.doi.org/10.1016/j.ydbio.2004.12.021
   PubMedGoogle Scholar
• McCarter J, Bartlett B, Dang T, Schedl T. On the control of oocyte meiotic maturation and ovulation in Caenorhabditis elegans. Dev Biol 1999; 205:111-28; PMID:9882501; http://dx.doi.org/10.1006/dbio.1998.9109
   PubMed Web of Science ®Google Scholar
• Sulston JE, Horvitz HR. Post-embryonic cell lineages of the nematode, Caenorhabditis elegans. Dev Biol 1977; 56:110-56; PMID:838129; http://dx.doi.org/10.1016/0012-1606(77)90158-0
   PubMed Web of Science ®Google Scholar
• Labrador L, Barroso C, Lightfoot J, Müller-Reichert T, Flibotte S, Taylor J, Moerman DG, Villeneuve AM, Martinez-Perez E. Chromosome movements promoted by the mitochondrial protein SPD-3 are required for homology search during Caenorhabditis elegans meiosis. PLoS Genet 2013; 9:e1003497; PMID:23671424; http://dx.doi.org/10.1371/journal.pgen.1003497
   PubMed Web of Science ®Google Scholar
• Schrimpf SP, Weiss M, Reiter L, Ahrens CH, Jovanovic M, Malmström J, Brunner E, Mohanty S, Lercher MJ, Hunziker PE, et al. Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes. PLoS Biol 2009; 7:e48; PMID:19260763; http://dx.doi.org/10.1371/journal.pbio.1000048
   PubMedGoogle Scholar
• Huang DW, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 2009; 4:44-57; PMID:19131956; http://dx.doi.org/10.1038/nprot.2008.211
   PubMed Web of Science ®Google Scholar
• Csankovszki G, Collette K, Spahl K, Carey J, Snyder M, Petty E, Patel U, Tabuchi T, Liu H, McLeod I, et al. Three distinct condensin complexes control C. elegans chromosome dynamics. Curr Biol 2009; 19:9-19; PMID:19119011; http://dx.doi.org/10.1016/j.cub.2008.12.006
   PubMedGoogle Scholar
• Kamath RS, Fraser AG, Dong Y, Poulin G, Durbin R, Gotta M, Kanapin A, Le Bot N, Moreno S, Sohrmann M, et al. Systematic functional analysis of the Caenorhabditis elegans genome using RNAi. Nature 2003; 421:231-7; PMID:12529635; http://dx.doi.org/10.1038/nature01278
   PubMed Web of Science ®Google Scholar
• Hayashi M, Mlynarczyk-Evans S, Villeneuve AM. The synaptonemal complex shapes the crossover landscape through cooperative assembly, crossover promotion and crossover inhibition during Caenorhabditis elegans meiosis. Genetics 2010; 186:45-58; PMID:20592266; http://dx.doi.org/10.1534/genetics.110.115501
   PubMed Web of Science ®Google Scholar
• Skop AR, Liu H, Yates J, Meyer BJ, Heald R. Dissection of the mammalian midbody proteome reveals conserved cytokinesis mechanisms. Science 2004; 305:61-6; PMID:15166316; http://dx.doi.org/10.1126/science.1097931
   PubMed Web of Science ®Google Scholar
• Stiernagle T. Maintenance of C. elegans. WormBook 2006; 11:1-11; PMID:18050451
   PubMedGoogle Scholar
• Dixon DK, Jones D, Candido EP. The differentially expressed 16-kD heat shock genes of Caenorhabditis elegans exhibit differential changes in chromatin structure during heat shock. DNA Cell Biol 1990; 9:177-91; PMID:2160246; http://dx.doi.org/10.1089/dna.1990.9.177
   PubMedGoogle Scholar
• Berth M, Moser FM, Kolbe M, Bernhardt J. The state of the art in the analysis of two-dimensional gel electrophoresis images. Appl Microbiol Biotechnol 2007; 76:1223-43; PMID:17713763; http://dx.doi.org/10.1007/s00253-007-1128-0
   PubMed Web of Science ®Google Scholar
• Tomanek L, Zuzow MJ, Hitt L, Serafini L, Valenzuela JJ. Proteomics of hyposaline stress in blue mussel congeners (genus Mytilus): implications for biogeographic range limits in response to climate change. J Exp Biol 2012; 215:3905-16; PMID:22899524; http://dx.doi.org/10.1242/jeb.076448
   PubMedGoogle Scholar
• Johnson TL, Tomanek L, Peterson DG. A proteomic analysis of the effect of growth hormone on mammary alveolar cell-T (MAC-T) cells in the presence of lactogenic hormones. Domest Anim Endocrinol 2013; 44:26-35; PMID:23017303; http://dx.doi.org/10.1016/j.domaniend.2012.08.001
   PubMedGoogle Scholar
• Kamath RS, Ahringer J. Genome-wide RNAi screening in Caenorhabditis elegans. Methods 2003; 30:313-21; PMID:12828945; http://dx.doi.org/10.1016/S1046-2023(03)00050-1
   PubMed Web of Science ®Google Scholar
• Hillers KJ, Villeneuve AM. Analysis of meiotic recombination in Caenorhabditis elegans. Methods Mol Biol 2009; 557:77-97; PMID:19799178; http://dx.doi.org/10.1007/978-1-59745-527-5_7
   PubMedGoogle Scholar
• Green RA, Kao H-L, Audhya A, Arur S, Mayers JR, Fridolfsson HN, Schulman M, Schloissnig S, Niessen S, Laband K, et al. A high-resolution C. elegans essential gene network based on phenotypic profiling of a complex tissue. Cell 2011; 145:470-82; PMID:21529718; http://dx.doi.org/10.1016/j.cell.2011.03.037
   PubMedGoogle Scholar
• Norman KR, Fazzio RT, Mellem JE, Espelt M V, Strange K, Beckerle MC, Maricq A V. The Rho/Rac-family guanine nucleotide exchange factor VAV-1 regulates rhythmic behaviors in C. elegans. Cell 2005; 123:119-32; PMID:16213217; http://dx.doi.org/10.1016/j.cell.2005.08.001
   PubMedGoogle Scholar
• Simmer F, Moorman C, van der Linden AM, Kuijk E, van den Berghe PVE, Kamath RS, Fraser AG, Ahringer J, Plasterk RH. Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals novel gene functions. PLoS Biol 2003; 1:E12; PMID:14551910; http://dx.doi.org/10.1371/journal.pbio.0000012
   PubMed Web of Science ®Google Scholar
• Kinchen JM, Doukoumetzidis K, Almendinger J, Stergiou L, Tosello-Trampont A, Sifri CD, Hengartner MO, Ravichandran KS. A pathway for phagosome maturation during engulfment of apoptotic cells. Nat Cell Biol 2008; 10:556-66; PMID:18425118; http://dx.doi.org/10.1038/ncb1718
   PubMed Web of Science ®Google Scholar
• Cui M, Kim EB, Han M. Diverse chromatin remodeling genes antagonize the Rb-involved SynMuv pathways in C. elegans. PLoS Genet 2006; 2:e74; PMID:16710447; http://dx.doi.org/10.1371/journal.pgen.0020074
   PubMedGoogle Scholar
• Robert VJP, Sijen T, van Wolfswinkel J, Plasterk RH. Chromatin and RNAi factors protect the C. elegans germline against repetitive sequences. Genes Dev 2005; 19:782-7; PMID:15774721; http://dx.doi.org/10.1101/gad.332305
   PubMed Web of Science ®Google Scholar
• Waters K, Yang AZ, Reinke V. Genome-wide analysis of germ cell proliferation in C.elegans identifies VRK-1 as a key regulator of CEP-1/p53. Dev Biol 2010; 344:1011-25; PMID:20599896; http://dx.doi.org/10.1016/j.ydbio.2010.06.022
   PubMed Web of Science ®Google Scholar
• Colaiácovo MP, Stanfield GM, Reddy KC, Reinke V, Kim SK, Villeneuve AM. A targeted RNAi screen for genes involved in chromosome morphogenesis and nuclear organization in the Caenorhabditis elegans germline. Genetics 2002; 162:113-28.
   PubMed Web of Science ®Google Scholar