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Special issue on International Conference on Sustainable Waste Treatment and Management (SWTM-2019)

A comprehensive review on fungal endophytes and its dynamics on Orchidaceae plants: current research, challenges, and future possibilities

ORCID Icon, ORCID Icon & ORCID Icon
Pages 316-334 | Received 17 Jun 2019, Accepted 10 Jul 2019, Published online: 26 Jul 2019

References

  • Christenhusz MJM, Byng JW. The number of known plant species in the world and its annual increase. Phytotaxa. 2016;261:201–217.
  • Zhang S, Yang Y, Li J, et al. Physiological diversity of orchids. Plant Divers. 2018;40(4):196–208.
  • Givnish TJ, Spalink D, Ames M, et al. Orchid phylogenomics and multiple drivers of their extraordinary diversification. Proc R Soc B. 2015;282:1814.
  • Chutulo EC, Chalannavar RK. Endophytic mycoflora and their bioactive compounds from Azadirachta Indica: a comprehensive review. J Fungi (Basel). 2018;4(2):1–12.
  • Salazar-Cerezo S, Martinez-Montiel N, Cruz-Lopez MC, et al. Fungal diversity and community composition of culturable fungi in Stanhopea trigrina Cast gibberellin producers. Front Microbiol. 2018;9:1–15.
  • Jasinge NU, Huynh T, Lawrie AC. Changes in orchid populations and endophytic fungi with rainfall and prescribed burning in Pterostylis revoluta in Victoria, Australia. AOB. 2018;121(2):321–334.
  • Lee BH, Kwon WJ, Kim JY, et al. Differences among endophytic fungal communities isolated from the roots of Cephalanthera longibracteata collected from different sites in Korea. Mycobiol. 2017;45(4):312–317.
  • Swamy MK, Sinniah UR, Akhtar MS. In vitro pharmacological activities and GC-MS analysis of different solvent extracts of Lantana camara leaves collected from tropical region of Malaysia. Evid-Based Complementary Altern Med. 2015;2015:1–9.
  • Brundrett MC. Understanding the roles of multifunctional mycorrhizal and endophytic fungi. In: Schulz BJE, Boyle CJC, Sieber TN, editors. Microbial root endophytes. Berlin: Springer-Verlag; 2006. p. 281–293.
  • Alurappa R, Chowdappa S, Narayanaswamy R, et al. Endophytic fungi and bioactive metabolites production: an update. In: Patra JK, Das G, Shin H-S, editors. Microbial biotechnology. Singapore: Springer; 2018. p. 455–482. DOI:https://doi.org/10.1007/978-981-10-7140-9_21
  • Sturz AV, Christie BR, Nowak J. Bacterial endophytes: potential role in developing sustainable systems of crop production. Crit Rev Plant Sci. 2000;1:1–30.
  • Demain AL. Importance of microbial natural products and the need to revitalize their discovery. J Ind Microbiol Biotechnol. 2014;41:185–201.
  • Shah S, Shrestha R, Maharjan S, et al. Isolation and characterization of plant growth-promoting endophytic fungi from the roots of Dendrobium moniliforme. Plants. 2019;8(5):1–11.
  • Chen XM, Dong HL, Hu KX, et al. Diversity and antimicrobial and plant-growth-promoting activities of endophytic fungi in Dendrobium loddigesii Rolfe. J Plant Growth Regul. 2010;29(3):328–337.
  • Sridhar KR. Chapter 3, Aspect and prospect of endophytic fungi. In: Sati SC, Belwal M, editors. Microbes: diversity and biotechnology. New Delhi, India: Daya Publishing House; 2012. p. 43–62.
  • Thakur J, Dwivedi MD, Uniyal PL. Ultrastructural studies and molecular characterization of root-associated fungi of Crepidium acuminatum (D. Don) Szlach.: a threatened and medicinally important taxon. J Genet. 2018;97(5):1139–1146.
  • Hyde KD, Soytong K. The fungal endophyte dilemma. Fungal Divers. 2008;33:163–173.
  • Schulz B, Boyle C. The endophytic continuum. Mycol Res. 2005;109:661–686.
  • Sieber TN. Endophytic fungi in forest trees: are they mutualists? Fungal Biol Rev. 2007;21:75–89.
  • Ma X, Kang J, Nontachaiyapoom S, et al. Non-mycorrhizal endophytic fungi from orchids. Curr Sci. 2015;109(1):72–87.
  • Chen J, Hu KX, Hou XQ, et al. Endophytic fungi assemblages from 10 Dendrobium medicinal plants (Orchidaceae). World J Microbiol Biotechnol. 2011;27:1009–1016.
  • Chen J, Wang H, Guo SX. Isolation and identification of endophytic and mycorrhizal fungi from seeds and roots of Dendrobium (Orchidaceae). Mycorrhiza. 2012;22(4):297–307.
  • Shi TQ, Peng H, Zeng SY, et al. Microbial production of plant hormones: opportunities and challenges. Bioengineered. 2017;8(2):124–128.
  • Liu L, Yang H, Shin H, et al. How to achieve high-level expression of microbial enzymes. Bioengineered. 2013;4(4):212–223.
  • Macdonald C, Singh B. Harnessing plant-microbe interactions for enhancing farm productivity. Bioengineered. 2014;5(1):5–9.
  • Gostinčar C, Turk M. Extremotolerant fungi as genetic resources for biotechnology. Bioengineered. 2012;3(5):293–297.
  • Boruta T. Uncovering the repertoire of fungal secondary metabolites: from Fleming’s laboratory to the International Space Station. Bioengineered. 2018;9(1):12–16.
  • González-Coloma A, Cosoveanu A, Cabrera R, et al. Chapter 2, Endophytic fungi and their bioprospection. In: Deshmukh SK, Misra JK, Tewari JP, et al, editors. Fungi: applications and management strategies. CRC Press, Taylor & Francis; 2016.p. 23-40
  • Stone JK, Bacon CW, White JF. An overview of endophytic microbes: endophytism defined. In: Bacon CW, White JF, editors. Microbial Endophytes. New York: Dekker; 2000. p. 3–30.
  • Srivastava S, Kadooka C, Uchida JY. Fusarium species as pathogen on orchids. Microbiol Res. 2018;207:188–195.
  • Lin WM, Huang LLK, Lin TP. Newly discovered native orchids of Taiwan. Taiwania. 2006;51:165–168.
  • Parthibhan S, Rao MV, Kumar TS. Culturable fungal endophytes in shoots of Dendrobium aqueum Lindley-an imperiled orchid. Ecol Genet Genomics. 2017;3-5:18–24.
  • Cevallos S, Herrera P, Sánchez-Rodríguez A, et al. Untangling factors that drive community composition of root associated fungal endophytes of Neotropical epiphytic orchids. Fungal Ecol. 2018;34:67–75.
  • Smith SE, Read D. Colonization of roots and anatomy of arbuscular mycorrhizas. In: Smith S, Read D, editors. Mycorrhizal Symbiosis. New York, USA: Academic Press; 2008.p. 42–90.
  • Kottke I, Suarez JP, Herrera P, et al. Atractiellomycetes belonging to the ‘rust’ lineage (Pucciniomycotina) form mycorrhizae with terrestrial and epiphytic neotropical orchids. Proc Royal Soc B Biol Sci. 2010;277:1289–1298.
  • Novotná A, Benítez Á, Herrera P, et al. High diversity of root-associated fungi isolated from three epiphytic orchids in southern Ecuador. Mycoscience. 2018;59(1):24–32.
  • Kemppainen MJ, Pardo AG. Transformation of the mycorrhizal fungus Laccaria bicolor using Agrobacterium tumefaciens. Bioeng Bugs. 2011;2(1):38–44.
  • Kemppainen MJ, Pardo AG. Gene knockdown by ihpRNA-triggering in the ectomycorrhizal basidiomycete fungus Laccariabicolor. Bioeng Bugs. 2010;1(5):354–358.
  • Harman GE, Howell CR, Viterbo A, et al. Trichoderma species – opportunistic, avirulent plant symbionts. Nat Rev Microbiol. 2004;2:43–56.
  • Sahoo HR, Gupta N. Diversity of endophytic phosphate solubilising fungi associated with Pomatocalpa decipiens (Lindl.) J.J. Smith – an endangered orchid in Barbara forest of Odisha, India. Stud Fungi. 2018;3(1):84–99.
  • Martos F, Dulormne M, Pailler T, et al. Independent recruitment of saprotrophic fungi as mycorrhizal partners by tropical achlorophyllous orchids. New Phytol. 2009;184:668–681.
  • Kogel KH, Franken P, Hückelhoven R. Endophyte or parasite – what decides? Curr Opin Plant Biol. 2006;9(4):358–363.
  • Kado CI. Chapter 9, Asymptomatic and latent infections. In: Kado CI, editor. Plant bacteriology. US: The American Phytopathological Society; 2016. p. 221–228.
  • Wu JB, Zhang CL, Mao PP, et al. First report of leaf spot caused by Nigrospora oryzae on Dendrobium candidum in China. Plant Dis. 2014;98(7):996.2.
  • Xiao F, Zhang JZ, Tu YL. First report of Fusarium oxysporum causing wilt of Dendrobium candidum in Zhejiang Province, China. Plant Dis. 2012;96(9):1377.1.
  • Sun C, Wang T, Shen XL, et al. First report of leaf spot caused by Cladosporium cladosporioides on Dendrobium officinale in China. Plant Dis. 2017;101(6):1055.
  • Li DL, Cao JF, Huo C, et al. First report of Phytophthora capsici causing blight and root rot of Dendrobium candidum in China. Plant Dis. 2017;102(3):685.
  • Zhang CQ, Zhang JX, Liu YH, et al. First report of black spot in Dendrobium officinale caused by A. alternata in Zhejiang Province, China. Plant Dis. 2018;102(4):824.
  • Lan CZ, Yu DY, Yao JA, et al. First report of anthracnose on Dendrobium officinale Kimura et Migo caused by Colletotrichum gloeosporioides in China. Plant Dis. 2015;100(1):226.
  • Batchelor SR. Orchid Culture-16-Diseases-Part 2 The flagrant fungi. In AGRIS. 1982 [cited 2019 Jun 24]. Available from: https://staugorchidsociety.org/PDF/AOS16-Diseases2.pdf
  • Xie YY, Wang LP, Fang L, et al. First report of leaf spot caused by Phoma multirostrata var. microspora on Dendrobium officinale in Zhejiang Province of China. Plant Dis. 2018;102(8):1655.
  • Arnold AE, Maynard Z, Gilbert GS, et al. Are tropical fungal endophytes hyperdiverse? Ecol Lett. 2000;3:267–274.
  • Clay K, Schardl C. Evolutionary origins and ecological consequences of endophyte symbiosis with grasses. Am Nat. 2002;160:99–127.
  • Park SH, Eom AH. Effects of mycorrhizal and endophytic fungi on plant community: a microcosm study. Mycobiology. 2007;35(4):186–190.
  • Weber D. Endophytic fungi, occurrence and metabolites. In: Anke T, Weber D, editors. Physiology and genetics. The Mycota (A comprehensive treatise on fungi as experimental systems for basic and applied research). Berlin, Heidelberg: Springer; 2009. p. 15.
  • Padder SA, Prasad R, Shah AH. Quorum sensing: a less known mode of communication among fungi. Microbiol Res. 2018;210:51–58.
  • Kumar S, Kaushik N. Batch culture fermentation of endophytic fungi and extraction of their metabolites. Bio-protocol. 2013;3(19):e926.
  • Yuniati Y, Yuliati L, Monica E, et al. Effect of variation conditions fermentation to production biomass of endophytic fungi Athelia rolfsii strain orchid. J Pharm Sci Res. 2018;10(11):2862–2865.
  • Su H, Kang JC, Cao JJ, et al. Medicinal plant endophytes produce analogous bioactive compounds. Chiang Mai J Sci. 2014;41(1):1–13.
  • Bergmann S, Funk AN, Scherlach K, et al. Activation of a silent fungal polyketide biosynthesis pathway through regulatory cross talk with a cryptic nonribosomal peptide synthetase gene cluster. Appl Environ Microbiol. 2010;76:8143–8149.
  • Nützmann H, Schroeckh V, Brakhage AA. Regulatory cross talk and microbial induction of fungal secondary metabolite gene clusters. Methods Enzymol. 2012;517:325–341. doi:https://doi.org/10.1016/B978-0-12-404634-4.00016-4
  • Tenorio-Salgado S, Tinoco R, Vazquez-Duhalt R, et al. Identification of volatile compounds produced by the bacterium Burkholderiatropica that inhibit the growth of fungal pathogens. Bioengineered. 2013;4(4):236–243.
  • Bansal R, Mukherjee P. Identification of novel gene clusters for secondary metabolism in Trichoderma genomes. Microbiol. 2016a;85(2):185–190.
  • Bansal R, Mukherjee P. The terpenoid biosynthesis toolkit of Trichoderma. Nat Prod Commun. 2016b;11:431–434.
  • Zeilinger S, Gruber S, Bansal R, et al. Secondary metabolism in Trichoderma – chemistry meets genomics. Fungal Biol Rev. 2016;30(2):74–90.
  • Keller NP, Turner G, Bennett JW. Fungal secondary metabolism – from biochemistry to genomics. Nat Rev Microbiol. 2005;3:937–947.
  • Neto YAAH, Garzon NGR, Pedezzi R, et al. Specificity of peptidases secreted by filamentous fungi. Bioengineered. 2018;9(1):30–37.
  • Atanasova L, Crom LS, Gruber S, et al. Comparative transcriptomics reveals different strategies of Trichoderma mycoparasitism. BMC Genomics. 2013;14:121.
  • Kubicek CP, Herrera-Estrella A, Seidl-Seiboth V, et al. Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma. Genome Biol. 2011;12:R40.
  • Malmierca MG, McCormick SP, Cardoza RE, et al. Production of trichodiene by Trichoderma harzianum alters the perception of this biocontrol strain by plants and antagonized fungi. Environ Microbiol. 2015;17:2628–2646.
  • Straat L, Graaff LH. Pathway transfer in fungi. Bioengineered. 2014;5(5):335–339.
  • Waud M, Busschaert P, Lievens B, et al. Specificity and localised distribution of mycorrhizal fungi in the soil may contribute to co-existence of orchid species. Fungal Ecol. 2016;20:155–165.
  • Khamchatra N, Dixon KW, Tantiwiwat S, et al. Symbiotic seed germination of an endangered epiphytic slipper orchid, Paphiopedilum villosum (Lindl.) Stein. from Thailand. S Afr J Bot. 2016;104:76–81.
  • Zettler LW, Rajaovelona L, Yokoya K, et al. Techniques for the collection, transportation, and isolation of orchid endophytes from afar: a case study from Madagascar. Bot Stud. 2017;58(1):54.
  • Zhu B, Wu L, Wan H, et al. Fungal elicitors stimulate biomass and active ingredients accumulation in Dendrobium catenatum plantlets. Biologia. 2018;73(10):917–926.
  • Mishra R, Sarma VV. Chapter 30 Current perspectives of endophytic fungi in sustainable development. In: Gehlot P, Singh J, editors. Fungi and their role in sustainable development: current perspectives. Switzerland: Springer Nature; 2018. p. 553–584. DOI:https://doi.org/10.1007/978-981-13-0393-7_30
  • Patil RH, Patil MP, Maheshwari VL. Chapter 5 – Bioactive secondary metabolites from endophytic fungi: a review of biotechnological production and their potential applications. In: Rahman AU, editor. Studies in natural products chemistry. Vol. 49. Elsevier; 2016. p. 189–205.
  • Strohl WR. The role of natural products in a modern drug discovery program. Drug Discov Today. 2000;5(2):39–41.
  • Maciá-Vicente JG, Rosso LC, Ciancio A, et al. Colonisation of barley roots by endophytic Fusarium equiseti and Pochonia chlamydosporia: effects on plant growth and disease. AAB. 2009;155(3):391–401.
  • Xing YM, Li XD, Liu MM, et al. Morphological and enzymatical characterization of the infection process of Pythium ultimum in Dendrobium officinale (Orchidaceae). Cryptogam Mycol. 2015;36(3):275–286.
  • Malinowski DP, Zuo H, Belesky DP, et al. Evidence for copper binding by extracellular root exudates of tall fescue but not perennial ryegrass infected with Neotyphodium spp. endophytes. Plant Soil. 2004;267(1):1–12.
  • Sudha V, Govindaraj R, Baskar K, et al. Biological properties of endophytic fungi. Braz Arch Biol Technol. 2016;59:e16150436.
  • Chandra S. Endophytic fungi: novel sources of anticancer lead molecules. Appl Microbiol Biotechnol. 2012;95:47–59.
  • Selosse MA, Martos F. Do chlorophyllous orchids heterotrophically use mycorrhizal fungal carbon? Trends Plant Sci. 2014;19(11):683–685.
  • Stark C, Babik W, Durka W. Fungi from the roots of the common terrestrial orchid Gymnadenia conopsea. Mycol Res. 2009;113(9):952–959.
  • Beltrán-Nambo MA, Martínez-Trujillo M, Montero-Castro JC, et al. Fungal diversity in the roots of four epiphytic orchids endemic to Southwest Mexico is related to the breadth of plant distribution. Rhizosphere. 2018;7:49–56.
  • Roberts DL, Dixon KW. Orchids. Curr Biol. 2008;18(8):R325–R329.
  • Bayman P, Otero JT. Microbial endophytes of orchid roots. In: Schulz BJE, Boyle CJC, Sieber TN, editors. Microbial root endophytes. Berlin Heidelberg: Springer; 2006. p. 153–177.
  • Chowdappa P, Chethana CS, Pant RP, et al. Multilocus gene phylogeny reveals occurrence of Colletotrichum cymbidiicola and C. cliviae on orchids in North East India. J Plant Pathol. 2014;96(2):327–334.
  • Tondello A, Vendramin E, Villani M, et al. Fungi associated with the southern Eurasian orchid Spiranthes spiralis (L.) Chevall. Fungal Biol. 2012;116(4):543–549.
  • Cai L, Hyde KD, Taylor PWJ, et al. A polyphasic approach for studying Colletotrichum. Fungal Divers. 2009;39:183–204.
  • Hadley G. Non-specificity of symbiotic infection in orchid mycorrhiza. New Phytol. 1970;69(4):1015–1023.
  • Lin H, Cao M, Stoy PC, et al. Assessing self-organization of plant communities-a thermodynamic approach. Ecol Model. 2009;220:784–790.
  • Nontachaiyapoom S, Sasirat S, Manoch L. Isolation and identification of Rhizoctonia-like fungi from roots of three orchid genera, Paphiopedilum, Dendrobium, and Cymbidium, collected in Chiang Rai and Chiang Mai provinces of Thailand. Mycorrhiza. 2010;20:459.
  • Wang X, Li Y, Song X, et al. Influence of host tree species on isolation and communities of mycorrhizal and endophytic fungi from roots of a tropical epiphytic orchid, Dendrobium sinense (Orchidaceae). Mycorrhiza. 2017;27:709.
  • Yamamoto T, Miura C, Fuji M, et al. Quantitative evaluation of protocorm growth and fungal colonization in Bletilla striata (Orchidaceae) reveals less-productive symbiosis with a non-native symbiotic fungus. BMC Plant Biol. 2017;17:50.
  • Bungtongdee N, Sopalun K, Laosripaiboon W, et al. The chemical composition, antifungal, antioxidant and antimutagenicity properties of bioactive compounds from fungal endophytes associated with Thai orchids. J Phytophathol. 2019;167(1):56–64.
  • Meng YY, Shao SC, Liu SJ, et al. Do the fungi associated with roots of adult plants support seed germination? A case study on Dendrobium exile (Orchidaceae). Global Ecol Conserv. 2019;17:e00582.
  • Wang X, Yam TW, Meng Q, et al. The dual inoculation of endophytic fungi and bacteria promotes seedlings growth in Dendrobium catenatum (Orchidaceae) under in vitro culture conditions. Plant Cell Tissue Organ Cult. 2016;126:523–531.
  • Pecoraro L, Huang L, Caruso T, et al. Fungal diversity and specificity in Cephalanthera damasonium and C. longifolia (Orchidaceae) mycorrhizas. J Syst Evol. 2017;55(2):158–169.
  • Govinda RMB, Suryanarayanan TS, Tangjang S. Endophytic fungi of orchids of Arunachal Pradesh, North Eastern India. Curr Res Environ Appl. 2016;6(4):293–299.
  • Sowanpreecha R, Rerngsamran P. Biocontrol of Orchid-pathogenic mold, Phytophthora palmivora, by antifungal proteins from Pseudomonas aeruginosa RS1. Mycobiology. 2018;46(2):129–137.
  • Xu F, Tao W, Cheng L, et al. Strain improvement and optimization of the media of taxol-producing fungus Fusarium maire. Biochem Eng J. 2006;31:67–73.
  • Qiao W, Ling F, Yu L, et al. Enhancing taxol production in a novel endophytic fungus, Aspergillus aculeatinus Tax-6, isolated from Taxus chinensis var. mairei. Fungal Biol. 2017;121:1037–1044.
  • Kumaran RS, Kim HJ, Hur BK. Taxol promising fungal endophyte, Pestalotiopsis species isolated from Taxus cuspidata. J Biosci Bioeng. 2010;110(5):541–546.
  • Yang N, Pan X, Chen GJ, et al. Fermentation engineering for enhanced paclitaxel production by taxus media endophytic fungus MF-5 (Alternaria sp.). J Biobased Mater Bioenergy. 2018;12(6):545–550.