Monocyte-related gene biomarkers for latent and active tuberculosis

References

• Ndzi EN, Nkenfou CN, Pefura EWY, et al. Tuberculosis diagnosis: algorithm that may discriminate latent from active tuberculosis. Heliyon. 2019;5(10):e02559.
   PubMed Web of Science ®Google Scholar
• Dutta NK, Tornheim JA, Fukutani KF, et al. Integration of metabolomics and transcriptomics reveals novel biomarkers in the blood for tuberculosis diagnosis in children. Sci Rep. 2020;10(1):19527.
   PubMed Web of Science ®Google Scholar
• Islam MS, Chughtai AA, Nazneen A, et al. A tuberculin skin test survey among healthcare workers in two public tertiary care hospitals in Bangladesh. PLoS One. 2020;15(12):e0243951.
   PubMed Web of Science ®Google Scholar
• Organization. WH. The End TB strategy, Global Strategy and Targets for Tuberculosis Prevention, Care and Control After 2015.
   Google Scholar
• Hassan AS, Ahmed JH, Al-Haroon SS. A study of the effect of Nigella sativa (Black seeds) in isoniazid (INH)-induced hepatotoxicity in rabbits. Indian J Pharmacol. 2012;44(6):678–682.
   PubMed Web of Science ®Google Scholar
• Liu S, Jia H, Hou S, et al. Recombinant Mtb9.8 of Mycobacterium bovis stimulates TNF-α and IL-1β secretion by RAW264.7 macrophages through activation of NF-κB pathway via TLR2. Sci Rep. 2018;8(1):1928.
   PubMedGoogle Scholar
• Liu Q, Ou Q, Chen H, et al. Differential expression and predictive value of monocyte scavenger receptor CD163 in populations with different tuberculosis infection statuses. BMC Infect Dis. 2019;19(1):1006.
   PubMed Web of Science ®Google Scholar
• Wayengera M, Mwebaza I, Welishe J, et al. Immuno-diagnosis of Mycobacterium tuberculosis in sputum, and reduction of timelines for its positive cultures to within 3 h by pathogen-specific thymidylate kinase expression assays. BMC Res Notes. 2017;10(1):368.
   PubMedGoogle Scholar
• Sampath P, Moideen K, Ranganathan UD, et al. Monocyte subsets: Phenotypes and function in tuberculosis infection. Front Immunol. 2018;9:1726.
   PubMed Web of Science ®Google Scholar
• Serbina NV, Jia T, Hohl TM, et al. Monocyte-mediated defense against microbial pathogens. Annu Rev Immunol. 2008;26(1):421–452.
   PubMedGoogle Scholar
• Sun T, Wu B, Wang J, et al. Evaluation of the diagnostic efficacy of Monocyte parameters and MCP-1 to distinguishing active tuberculosis from latent tuberculosis. Clin Lab. 2019;65(7). DOI:10.7754/Clin.Lab.2018.181115.
   Web of Science ®Google Scholar
• Estévez O, Anibarro L, Garet E, et al. An RNA-seq based machine learning approach identifies latent tuberculosis patients with an active tuberculosis profile. Front Immunol. 2020;11:1470.
   PubMed Web of Science ®Google Scholar
• Cai Y, Yang Q, Tang Y, et al. Increased complement C1q level marks active disease in human tuberculosis. PLoS One. 2014;9(3):e92340.
   PubMed Web of Science ®Google Scholar
• Cao R, Yuan L, Ma B, et al. An EMT-related gene signature for the prognosis of human bladder cancer. J Cell Mol Med. 2020;24(1):605–617.
   PubMed Web of Science ®Google Scholar
• Newman AM, Liu CL, Green MR, et al. Robust enumeration of cell subsets from tissue expression profiles. Nat Methods. 2015;12(5):453–457.
   PubMed Web of Science ®Google Scholar
• Xia M, Wu Q, Chen P, et al. Regulatory T cell-related gene biomarkers in the deterioration of Atherosclerosis. Front Cardiovasc Med. 2021;8:661709.
   PubMed Web of Science ®Google Scholar
• Simon SL, Hoffman FO, Hofer E. The two-dimensional Monte Carlo: a new methodologic paradigm for dose reconstruction for epidemiological studies. Radiat Res. 2015;183(1):27–41.
   PubMed Web of Science ®Google Scholar
• Huang Da W, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc. 2009;4(1):44–57. 10.1038/nprot.2008.211.
   PubMed Web of Science ®Google Scholar
• Kimes PK, Liu Y, Neil Hayes D, et al. Statistical significance for hierarchical clustering. Biometrics. 2017;73(3):811–821.
   PubMed Web of Science ®Google Scholar
• Berry MP, Graham CM, McNab FW, et al. An interferon-inducible neutrophil-driven blood transcriptional signature in human tuberculosis. Nature. 2010;466(7309):973–977.
   PubMed Web of Science ®Google Scholar
• Kaforou M, Wright VJ, Oni T, et al. Detection of tuberculosis in HIV-infected and -uninfected African adults using whole blood RNA expression signatures: a case-control study. PLoS Med. 2013;10(10):e1001538.
   PubMed Web of Science ®Google Scholar
• Anderson ST, Kaforou M, Brent AJ, et al. Diagnosis of childhood tuberculosis and host RNA expression in Africa. N Engl J Med. 2014;370(18):1712–1723.
   PubMed Web of Science ®Google Scholar
• Foroutan M, Bhuva DD, Lyu R, et al. Single sample scoring of molecular phenotypes. BMC Bioinformatics. 2018;19(1):404.
   PubMed Web of Science ®Google Scholar
• Johnston MG, Faulkner C. A bootstrap approach is a superior statistical method for the comparison of non-normal data with differing variances. New Phytol. 2021;230(1):23–26.
   PubMed Web of Science ®Google Scholar
• Bergot E, Abiteboul D, Andréjak C, et al. Practice recommendations for the use and interpretation of interferon gamma release assays in the diagnosis of latent and active tuberculosis. Rev Mal Respir. 2018;35(8):852–858.
   PubMed Web of Science ®Google Scholar
• Nahid P, Mase SR, Migliori GB, et al. Treatment of drug-resistant tuberculosis. an official ATS/CDC/ERS/IDSA clinical practice guideline. American Journal of Respiratory and Critical Care Medicine. 2019;200(10):e93–e142.
   PubMed Web of Science ®Google Scholar
• Lund PK, Joø GB, Westvik AB, et al. Isolation of monocytes from whole blood by density gradient centrifugation and counter-current elutriation followed by cryopreservation: six years’ experience. Scand J Clin Lab Invest. 2000;60(5):357–365.
   PubMed Web of Science ®Google Scholar
• Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods. 2001;25(4):402–408.
   PubMed Web of Science ®Google Scholar
• Janssen S, Schutz C, Ward A, et al. Mortality in severe human immunodeficiency virus-tuberculosis associates with innate immune activation and dysfunction of monocytes. Clin Infect Dis. 2017;65(1):73–82.
   PubMed Web of Science ®Google Scholar
• Tan HY, Yong YK, Shankar EM, et al. Aberrant Inflammasome Activation Characterizes Tuberculosis-Associated Immune Reconstitution Inflammatory Syndrome. J Immunol. 2016;196(10):4052–4063.
   PubMed Web of Science ®Google Scholar
• Druszczynska M, Wlodarczyk M, Janiszewska-Drobinska B, et al. Monocyte signal transduction receptors in active and latent tuberculosis. Clin Dev Immunol. 2013;2013:851452.
   PubMedGoogle Scholar
• Mootoo A, Stylianou E, Arias MA, et al. TNF-alpha in tuberculosis: a cytokine with a split personality. Inflamm Allergy Drug Targets. 2009;8(1):53–62.
   PubMedGoogle Scholar
• Quesniaux VF, Jacobs M, Allie N, et al. TNF in host resistance to tuberculosis infection. Curr Dir Autoimmun. 2010;11:157–179.
   PubMedGoogle Scholar
• Clay H, Volkman HE, Ramakrishnan L. Tumor necrosis factor signaling mediates resistance to mycobacteria by inhibiting bacterial growth and macrophage death. Immunity. 2008;29(2):283–294.
   PubMed Web of Science ®Google Scholar
• Roca FJ, Whitworth LJ, Redmond S, et al. TNF induces pathogenic programmed macrophage necrosis in Tuberculosis through a Mitochondrial-Lysosomal-Endoplasmic Reticulum Circuit. Cell. 2019;178(6):1344–1361.e1311.
   PubMed Web of Science ®Google Scholar
• Zhang L, Jiang X, Pfau D, et al. Type I interferon signaling mediates Mycobacterium tuberculosis-induced macrophage death. J Exp Med. 2021;218(2). DOI:10.1084/jem.20200887.
   Web of Science ®Google Scholar
• Gao J, Song L, Li D, et al. Clinical value of haptoglobin and soluble CD163 testing for the differential diagnosis of tuberculous and malignant pleural effusions. Medicine (Baltimore). 2019;98(42):e17416.
   PubMed Web of Science ®Google Scholar
• Arya R, Dabral D, Faruquee HM, et al. Serum Small Extracellular Vesicles Proteome of Tuberculosis Patients Demonstrated Deregulated Immune Response. Proteomics Clin Appl. 2020;14(1):e1900062.
   PubMed Web of Science ®Google Scholar
• Zoller T, Mfinanga EH, Zumba TB, et al. Chronic airflow obstruction in Tanzania - a cross-sectional study. BMC Pulm Med. 2018;18(1):11.
   PubMedGoogle Scholar
• Waidely E, Al-Youbi AO, Bashammakh AS, et al. Alpha-l-Fucosidase Immunoassay for Early Detection of Hepatocellular Carcinoma. Anal Chem. 2017;89(17):9459–9466.
   PubMed Web of Science ®Google Scholar
• Sobkowicz AD, Gallagher ME, Reid CJ, et al. Modulation of expression in BEAS-2B airway epithelial cells of α-L-fucosidase A1 and A2 by Th1 and Th2 cytokines, and overexpression of α-L-fucosidase 2. Mol Cell Biochem. 2014;390(1–2):101–113.
   PubMed Web of Science ®Google Scholar
• Zhang M, Xiong D, Li H, et al. Diagnostic value of T-Spot TB combined with INF-γ and IL-27 in tuberculous pleurisy. Exp Ther Med. 2018;15(2):1871–1874.
   PubMed Web of Science ®Google Scholar
• Kim JY, Park JH, Kim MC, et al. Combined IFN-γ and TNF-α release assay for differentiating active tuberculosis from latent tuberculosis infection. J Infect. 2018;77(4):314–320.
   PubMed Web of Science ®Google Scholar
• Kwon CH, Park HJ, Choi JH, et al. Snail and serpinA1 promote tumor progression and predict prognosis in colorectal cancer. Oncotarget. 2015;6(24):20312–20326.
   PubMedGoogle Scholar
• Hadzik-Blaszczyk M, Zdral A, Zielonka TM, et al. SERPINA1 Gene Variants in Granulomatosis with Polyangiitis. Adv Exp Med Biol. 2018;1070:9–18.
   PubMed Web of Science ®Google Scholar
• Wawrocki S, Kielnierowski G, Rudnicka W, et al. Interleukin-18, Functional IL-18 Receptor and IL-18 Binding Protein Expression in Active and Latent Tuberculosis. Pathogens. 2020;9(6):451.
   PubMed Web of Science ®Google Scholar
• Xue G, Hua L, Zhou N, et al. Characteristics of immune cell infiltration and associated diagnostic biomarkers in ulcerative colitis: results from bioinformatics analysis. Bioengineered. 2021;12(1):252–265.
   PubMed Web of Science ®Google Scholar
• Zeng Y, Li N, Zheng Z, et al. Screening of key biomarkers and immune infiltration in Pulmonary Arterial Hypertension via integrated bioinformatics analysis. Bioengineered. 2021;12(1):2576–2591.
   PubMed Web of Science ®Google Scholar