Speech Map: a statistical multimodal atlas of 4D tongue motion during speech from tagged and cine MR images

References

• Avants BB , Tustison NJ , Song G , Cook PA , Klein A , Gee JC . 2011. A reproducible evaluation of ANTs similarity metric performance in brain image registration. Neuroimage. 54(3):2033–2044.
   PubMed Web of Science ®Google Scholar
• Ehrhardt J , Werner R , Schmidt-Richberg A , Handels H . 2011. Statistical modeling of 4D respiratory lung motion using diffeomorphic image registration. IEEE Transactions on Medical Imaging. 30(2):251–265.
   PubMed Web of Science ®Google Scholar
• Fu M , Barlaz MS , Holtrop JL , Perry JL , Kuehn DP , Shosted RK , Liang ZP , Sutton BP . 2017. High-frame-rate full-vocal-tract 3D dynamic speech imaging. Magnetic Resonance in Medicine. 77(4):1619–1629.
   PubMed Web of Science ®Google Scholar
• Fu M , Woo J , Liang Z-P , Sutton B . 2016. Spatiotemporal-atlas-based dynamic speech imaging. Proc. SPIE 9788, Medical Imaging 2016: Biomedical Applications in Molecular, Structural, and Functional Imaging, 978804.
   Google Scholar
• Gaige TA , Benner T , Wang R , Wedeen VJ , Gilbert RJ . 2007. Three dimensional myoarchitecture of the human tongue determined in vivo by diffusion tensor imaging with tractography. Journal of Magnetic Resonance Imaging. 26(3):654–661.
   PubMed Web of Science ®Google Scholar
• Gilbert RJ , Magnusson LH , Napadow VJ , Benner T , Wang R , Wedeen VJ . 2006. Mapping complex myoarchitecture in the bovine tongue with diffusion-spectrum magnetic resonance imaging. Biophysical Journal. 91(3):1014–1022.
   PubMed Web of Science ®Google Scholar
• Ibragimov B , Prince J , Murano E , Woo J , Stone M , Likar B , Pernus F , Vrtovec T . 2015. Segmentation of tongue muscles from super-resolution MR images. Medical Image Analysis. 20(1):198–207.
   PubMed Web of Science ®Google Scholar
• Kier WM , Smith KK . 1985. Tongues, tentacles and trunks: the biomechanics of movement in muscular-hydrostats. Zoological journal of the Linnean Society. 83:307–324.
   Web of Science ®Google Scholar
• LeCun Y , Bengio Y , Hinton G . 2015. Deep learning. Nature. 521:436–444.
   PubMed Web of Science ®Google Scholar
• Lucero JC , Munhall KG , Gracco VL , Ramsay JO . 1997. On the registration of time and the patterning of speech movements. Journal of Speech, Language, and Hearing Research. 40(5):1111–1117.
   PubMed Web of Science ®Google Scholar
• Mansi T , Pennec X , Sermesant M , Delingette H , Ayache N . 2011. iLogDemons: a demons-based registration algorithm for tracking incompressible elastic biological tissues. International Journal of Computer Vision. 92(1):92–111.
   Web of Science ®Google Scholar
• McVeigh ER , Atalar E . 1992. Cardiac tagging with breath-hold cine MRI. Magnetic Resonance in Medicine. 28(2):318–327.
   PubMed Web of Science ®Google Scholar
• Miller MI . 2004. Computational anatomy: shape, growth, and atrophy comparison via diffeomorphisms. Neuroimage. 23:19–33.
   Web of Science ®Google Scholar
• Narayanan S , Nayak K , Lee S , Sethy A , Byrd D . 2004. An approach to real-time magnetic resonance imaging for speech production. Journal of Acoustical Society of America. 115(4):1771–1776.
   PubMed Web of Science ®Google Scholar
• Osman NF , Kerwin WS , McVeigh ER , Prince JL . 1999. Cardiac motion tracking using CINE harmonic phase (HARP) magnetic resonance imaging. Magnetic Resonance in Medicine. 42(6):1048–1060.
   PubMed Web of Science ®Google Scholar
• Parthasarathy V , Prince JL , Stone M , Murano E , Nessaiver M . 2007. Measuring Tongue Motion from Tagged Cine-MRI Using Harmonic Phase (HARP) Processing. Journal of Acoustical Society of America. 121(1):491–504.
   PubMed Web of Science ®Google Scholar
• Pittman LJ , Bailey EF . 2009. Genioglossus and intrinsic electromyographic activities in impeded and unimpeded protrusion tasks. Journal of neurophysiology. 101(1):276–282.
   PubMed Web of Science ®Google Scholar
• Puyol-Antón E , Sinclair M , Gerber B , Silvia MS , Langet H , De Craene M , Aljabar PP , King AP . 2017. A multimodal spatiotemporal cardiac motion atlas from MR and ultrasound data. Medical Image Analysis. 40:96–110.
   Google Scholar
• Shinagawa H , Murano EZ , Zhuo J , Landman B , Gullapalli RP , Prince JL , Stone M . 2008. Tongue muscle fiber tracking during rest and tongue protrusion with oral appliances: a preliminary study with diffusion tensor imaging. Acoustical Science and Technology. 29(4):291–294.
   Google Scholar
• Stavness I , Lloyd JE , Fels S . 2012. Automatic prediction of tongue muscle activations using a finite element model. Journal of Biomechanics. 45(16):2841–2848.
   PubMed Web of Science ®Google Scholar
• Stone M , Woo J , Lee J , Poole T , Seagraves A , Chung M , Kim E , Murano EZ , Prince JL , Blemker SS . 2016. Structure and Variability in Tongue Muscle Anatomy. Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization. 30:1–9.
   Google Scholar
• Wang B , Prastawac M , Irimiad A , Sahae A , Liua W . 2016. G., S. Y. Matthew, Vespaf, P. M., Van Hornd, J., Gerig, G., Modeling 4D pathological changes by leveraging normative models. Computer Vision and Image Understanding. 151:3–13.
   PubMed Web of Science ®Google Scholar
• Wedeen VJ , Weisskoff RM , Reese TG , Beache GM , Poncelet BP , Rosen BR , Dinsmore RE . 1995. Motionless movies of myocardial strain rates using stimulated echoes. Magnetic Resonance in Medicine. 33(3):401–408.
   PubMed Web of Science ®Google Scholar
• Woo J , Lee J , Murano E , Xing F , Al-Talib M , Stone M , Prince JL . 2015. A High-resolution Atlas and Statistical Model of the Vocal Tract from Structural MRI. Journal of Computer Methods in Biomechanics and Biomedical Engineering. 3(1):47–60.
   PubMed Web of Science ®Google Scholar
• Woo J , Murano EZ , Stone M , Prince JL . 2012. Reconstruction of high-resolution tongue volumes from MRI. IEEE Transactions on Biomedical Engineering. 59(12):3511–3524.
   PubMed Web of Science ®Google Scholar
• Woo J , Normandin M , Guehl N , Wooten D , Brady T , Baghdady R , Shoup T , Ouyang J El , Fakhri G , Alpert N . 2016. 4D Multimodal Atlas of the Swine Heart from PET-CT Images. San Diego, CA: Society of Nuclear Medicine.
   Google Scholar
• Woo J , Stone M , Prince JL . 2015 Feb. Multimodal Registration via Mutual Information Incorporating Geometric and Spatial Context. IEEE Transactions on Medical Imaging. 24(2):757–769.
   Google Scholar
• Woo J , Stone M , Suo Y , Murano EZ , Prince JL . 2014. Tissue-point motion tracking in the tongue from cine MRI and tagged MRI. Journal of Speech, Language, and Hearing Research. 57(2):626–636.
   Google Scholar
• Woo J , Xing F , Lee J , Stone M , Prince JL . 2014. Determining functional units of tongue motion via graph-regularized sparse non-negative matrix factorization. Medical Image Computing and Computer-assisted Intervention. 17(2):146–153.
   PubMedGoogle Scholar
• Woo J , Xing F , Lee J , Stone M , Prince J . 2015. Construction of an unbiased spatio-temporal atlas of the tongue during speech. Information Processing in Medical Imaging. 24:723–732.
   PubMedGoogle Scholar
• Woo J , Xing F , Lee J , Stone M , Prince JL . 2016. A spatio-temporal atlas and statistical model of the tongue during speech from cine-MRI. Computer Methods in Biomechanics and Biomedical Engineering:Imaging & Visualization. 1–12.
   PubMed Web of Science ®Google Scholar
• Xing F , Prince J , Stone M , Wedeen V El , Fakhri G , Woo J . 2017 Feb. A four-dimensional motion field atlas of the tongue from tagged and cine magnetic resonance imaging. SPIE Medical Imaging. Orlando, Florida.
   Google Scholar
• Xing F , Woo J , Gomez AD , Pham DL , Bayly PV , Stone M , Prince JL . 2017. Phase Vector Incompressible Registration Algorithm (PVIRA) for Motion Estimation from Tagged Magnetic Resonance Images. IEEE Trans Med Imaging. 36(10):2116–2128.
   PubMed Web of Science ®Google Scholar
• Xing F , Woo J , Lee J , Murano EZ , Stone M , Prince JL . 2016. Analysis of 3-D tongue motion from tagged and cine magnetic resonance images. Journal of Speech Language and Hearing Research. 59(3):468–479.
   PubMed Web of Science ®Google Scholar
• Xing F , Ye C , Woo J , Stone M , Prince JL . 2015 Feb. Relating speech production to tongue muscle compressions using tagged and high-resolution magnetic resonance imaging, SPIE Medical Imaging: Image Processing. USA: Florida.
   Google Scholar