Detection of dicistroviruses RNA in blood of febrile Tanzanian children

References

• Anthony SJ, et al. A strategy to estimate unknown viral diversity in mammals. mBio. 2013;4:e00598–e00513. doi: 10.1128/mBio.00598-13
   PubMed Web of Science ®Google Scholar
• Shi M, et al. Redefining the invertebrate RNA virosphere. Nature. 2016;540:539–543. doi: 10.1038/nature20167
   PubMed Web of Science ®Google Scholar
• van Aerle R, Santos EM. Advances in the application of high-throughput sequencing in invertebrate virology. J Invertebr Pathol. 2017;147:145–156. doi: 10.1016/j.jip.2017.02.006
   PubMed Web of Science ®Google Scholar
• Brown JR, et al. Astrovirus VA1/HMO-C: an increasingly recognized neurotropic pathogen in immunocompromised patients. Clin Infect Dis. 2015;60:881–888. doi: 10.1093/cid/ciu940
   PubMed Web of Science ®Google Scholar
• Cordey S, et al. Astrovirus MLB2, a New Gastroenteric virus associated with Meningitis and Disseminated infection. Emerg Infect Dis. 2016;22:846–853. doi: 10.3201/eid2205.151807
   PubMed Web of Science ®Google Scholar
• Hoffmann B, et al. A Variegated Squirrel Bornavirus associated with Fatal human Encephalitis. N Engl J Med. 2015;373:154–162. doi: 10.1056/NEJMoa1415627
   PubMed Web of Science ®Google Scholar
• Komoto S, Adah MI, Ide T, et al. Whole genomic analysis of human and bovine G8P[1] rotavirus strains isolated in Nigeria provides evidence for direct bovine-to-human interspecies transmission. Infect Genet Evol. 2016;43:424–433. doi: 10.1016/j.meegid.2016.06.023
   PubMed Web of Science ®Google Scholar
• Naccache SN, et al. Diagnosis of neuroinvasive astrovirus infection in an immunocompromised adult with encephalitis by unbiased next-generation sequencing. Clin Infect Dis. 2015;60:919–923. doi: 10.1093/cid/ciu912
   PubMed Web of Science ®Google Scholar
• Ai JW, et al. Human Endophthalmitis Caused By pseudorabies virus infection, China, 2017. Emerg Infect Dis 2018;24:1087–1090. doi: 10.3201/eid2406.171612
   PubMed Web of Science ®Google Scholar
• Holmes EC. The Expanding Virosphere. Cell Host Microbe. 2016;20:279–280. doi: 10.1016/j.chom.2016.08.007
   PubMed Web of Science ®Google Scholar
• Keitel K, Kagoro F. A novel electronic algorithm using host biomarker point-of-care tests for the management of febrile illnesses in Tanzanian children (e-POCT): A randomized, controlled non-inferiority trial. PLoS Med. 2017;14:e1002411. doi: 10.1371/journal.pmed.1002411
   PubMed Web of Science ®Google Scholar
• D'Acremont V. Etiologies of Acute Febrile Illness Among Adults Attending an Outpatient Department in Dar es Salaam. Clinical Trials.gov Identifier: NCT01947075.
   Google Scholar
• Bonning BC, Miller WA. Dicistroviruses. Annu Rev Entomol 2010;55:129–150. doi: 10.1146/annurev-ento-112408-085457
   PubMed Web of Science ®Google Scholar
• Petty T, et al. Comprehensive human virus screening using high-throughput sequencing with a user-friendly representation of bioinformatics analysis: a pilot study. J Clin Microbiol. 2014;52:3351–3361. doi: 10.1128/JCM.01389-14
   PubMed Web of Science ®Google Scholar
• Peng Y, Leung HC, Yiu SM, et al. IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth. Bioinformatics. 2012;28:1420–1428. doi: 10.1093/bioinformatics/bts174
   PubMed Web of Science ®Google Scholar
• Wright ES, Vetsigian KH. Quality filtering of Illumina index reads mitigates sample cross-talk. BMC Genomics. 2016;17:876. doi: 10.1186/s12864-016-3217-x
   PubMed Web of Science ®Google Scholar
• Le SQ, Gascuel O. An improved general amino acid replacement matrix. Mol Biol Evol. 2008;25:1307–1320. doi: 10.1093/molbev/msn067
   PubMed Web of Science ®Google Scholar
• Kumar S, Stecher G, Li M, et al. MEGA x: molecular Evolutionary genetics analysis across Computing Platforms. Mol Biol Evol. 2018;35:1547–1549. doi: 10.1093/molbev/msy096
   PubMed Web of Science ®Google Scholar
• Schibler M, et al. Critical analysis of rhinovirus RNA load quantification by real-time reverse transcription-PCR. J Clin Microbiol. 2012;50:2868–2872. doi: 10.1128/JCM.06752-11
   PubMed Web of Science ®Google Scholar
• Lipkin WI. The changing face of pathogen discovery and surveillance. Nature Rev Microbiol. 2013;11:133–141. doi: 10.1038/nrmicro2949
   PubMed Web of Science ®Google Scholar
• Phan TG, et al. Sera of Peruvians with fever of unknown origins include viral nucleic acids from non-vertebrate hosts. Virus Genes. 2018;54:33–40. doi: 10.1007/s11262-017-1514-3
   PubMed Web of Science ®Google Scholar
• Ngoi CN, et al. The plasma virome of febrile adult Kenyans shows frequent parvovirus B19 infections and a novel arbovirus (Kadipiro virus). J Gen Virol. 2016;97:3359–3367. doi: 10.1099/jgv.0.000644
   PubMed Web of Science ®Google Scholar
• Schlaberg R, Chiu CY, Miller S, et al. Validation of Metagenomic Next-Generation sequencing tests for Universal pathogen detection. Arch Pathol Lab Med. 2017;141:776–786. doi: 10.5858/arpa.2016-0539-RA
   PubMed Web of Science ®Google Scholar
• Duraisamy R, et al. Detection of novel RNA viruses from free-living gorillas, Republic of the Congo: genetic diversity of picobirnaviruses. Virus Genes. 2018;54:256–271. doi: 10.1007/s11262-018-1543-6
   PubMed Web of Science ®Google Scholar
• Zhang W, et al. Virome comparisons in wild-diseased and healthy captive giant pandas. Microbiome. 2017;5:90. doi: 10.1186/s40168-017-0308-0
   PubMed Web of Science ®Google Scholar
• Reuter G, Pankovics P, Gyongyi Z, et al. Novel dicistrovirus from bat guano. Arch Virol. 2014;159:3453–3456. doi: 10.1007/s00705-014-2212-2
   PubMed Web of Science ®Google Scholar
• Bennett AJ, et al. Diverse RNA viruses of arthropod origin in the blood of fruit bats suggest a link between bat and arthropod viromes. Virology. 2018;528:64–72. doi: 10.1016/j.virol.2018.12.009
   PubMed Web of Science ®Google Scholar
• Victoria JG, et al. Metagenomic analyses of viruses in stool samples from children with acute flaccid paralysis. J Virol. 2009;83:4642–4651. doi: 10.1128/JVI.02301-08
   PubMed Web of Science ®Google Scholar
• Holtz LR, et al. Geographic variation in the eukaryotic virome of human diarrhea. Virology. 2014;468-470:556–564. doi: 10.1016/j.virol.2014.09.012
   PubMed Web of Science ®Google Scholar
• Audelo-del-Valle J, et al. Infection of cultured human and monkey cell lines with extract of penaeid shrimp infected with Taura syndrome virus. Emerg Infect Dis. 2003;9:265–266. doi: 10.3201/eid0902.020181
   PubMed Web of Science ®Google Scholar
• Pantoja CR, Navarro SA, Naranjo J, et al. Nonsusceptibility of primate cells to Taura syndrome virus. Emerg Infect Dis. 2004;10:2106–2112. doi: 10.3201/eid1012.040419
   PubMed Web of Science ®Google Scholar
• Querido JF, et al. Seroprevalence of Triatoma virus (Dicistroviridae: Cripaviridae) antibodies in Chagas disease patients. Parasites Vectors. 2015;8:29. doi: 10.1186/s13071-015-0632-9
   PubMed Web of Science ®Google Scholar