CRISPR-based platform for carbapenemases and emerging viruses detection using Cas12a (Cpf1) effector nuclease

References

• Nii-Trebi NI. Emerging and neglected infectious diseases: insights, advances, and challenges. Biomed Res Int. 2017. 5245021. doi: 10.1155/2017/5245021
   PubMed Web of Science ®Google Scholar
• Bosch I, de Puig H, Hiley M, et al. Rapid antigen tests for dengue virus serotypes and Zika virus in patient serum. Sci Transl Med. 2017;9(409): eaan1589. doi:10.1126/scitranslmed.aan1589.
   PubMed Web of Science ®Google Scholar
• Singh RK, Dhama K, Karthik K, et al. Advances in diagnosis, surveillance, and monitoring of Zika virus: an update. Front Microbiol. 2018;8:2677. doi: 10.3389/fmicb.2017.02677
   PubMed Web of Science ®Google Scholar
• Cabral-Castro MJ, Cavalcanti MG, Peralta RHS, et al. Molecular and serological techniques to detect co-circulation of DENV, ZIKV and CHIKV in suspected dengue-like syndrome patients. J Clin Virol. 2016;82:108–111. doi: 10.1016/j.jcv.2016.07.017
   PubMed Web of Science ®Google Scholar
• Yao R, Liu D, Jia X, et al. CRISPR-Cas9/Cas12a biotechnology and application in bacteria. Synth Syst Biotechnol. 2018;3(3):135–149. doi: 10.1016/j.synbio.2018.09.004
   PubMed Web of Science ®Google Scholar
• Zetsche B, Gootenberg JS, Abudayyeh OO, et al. Cpf1 is a single RNA-guided endonuclease of a class 2 CRISPR-Cas system. Cell. 2015;163(3):759–771. doi: 10.1016/j.cell.2015.09.038
   PubMed Web of Science ®Google Scholar
• Chen JS, Ma E, Harrington LB, et al. CRISPR-Cas12a target binding unleashes indiscriminate single-stranded DNase activity. Science. 2018;360(6387):436–439. doi: 10.1126/science.aar6245
   PubMed Web of Science ®Google Scholar
• Li SY, Cheng QX, Wang JM, et al. CRISPR-Cas12a-assisted nucleic acid detection [ published correction appears in Cell Discov. 2019 Mar 12;5:17]. Cell Discov. 2018;4:20. doi: 10.1038/s41421-018-0028-z
   PubMed Web of Science ®Google Scholar
• Gootenberg JS, Abudayyeh OO, Lee JW, et al. Nucleic acid detection with CRISPR-Cas13a/C2c2. 2017. Science; 356(6336):438–442. doi: 10.1126/science.aam9321
   PubMed Web of Science ®Google Scholar
• Moreno-Mateos MA, Vejnar CE, Beaudoin J-D, et al. CRISPRscan: designing highly efficient sgRNAs for CRISPR-Cas9 targeting in vivo. Nat Methods. 2015;12(10):982–988. doi: 10.1038/nmeth.3543
   PubMed Web of Science ®Google Scholar
• Santiago GA, Vergne E, Quiles Y, Cosme J, Vazquez J, et al. Analytical and clinical performance of the CDC real time RT-PCR assay for detection and typing of dengue virus. PLoS Negl Trop Dis 2013; 7(7):e2311. doi:10.1371/journal.pntd.0002311.
   Google Scholar
• Myhrvold C, Freije CA, Gootenberg JS, et al. Field-deployable viral diagnostics using CRISPR-Cas13. 2018. Science; 360(6387):444–448. doi: 10.1126/science.aas8836
   PubMed Web of Science ®Google Scholar
• Dong M, Fisher C, Añez G, et al. Standardized methods to generate mock (spiked) clinical specimens by spiking blood or plasma with cultured pathogens. J Appl Microbiol. 2016 Apr;120(4):1119–1129. doi: 10.1111/jam.13082
   PubMed Web of Science ®Google Scholar
• Avšič-Županc T, Saksida A, Korva M. Hantavirus infections. Clin Microbiol Infect. 2019;21S:e6–e16. doi: 10.1111/1469-0691.12291
   PubMed Web of Science ®Google Scholar
• Kantor IN. Dengue, zika, chikungunya y el desarrollo de vacunas [ Dengue, zika, chikungunya and the development of vaccines]. Medicina (B Aires). 2018;78(1):23–28.
   PubMedGoogle Scholar
• Ben-Shachar R, Schmidler S, Koelle K. Drivers of inter-individual variation in dengue viral load dynamics. PLoS Comput Biol. 2016;12(11): e1005194. doi:10.1371/journal.pcbi.1005194.
   PubMed Web of Science ®Google Scholar
• Gootenberg JS, Abudayyeh OO, Kellner MJ, et al. Multiplexed and portable nucleic acid detection platform with Cas13, Cas12a, and Csm6. Science. 2018;360(6387):439–444. doi: 10.1126/science.aaq0179
   PubMed Web of Science ®Google Scholar
• Gao M, Daniel D, Zou H, et al. Rapid detection of a dengue virus RNA sequence with single molecule sensitivity using tandem toehold-mediated displacement reactions. Chem Commun (Camb). 2018;54(8):968–971. doi: 10.1039/C7CC09131A
   PubMed Web of Science ®Google Scholar
• Deng R, Zhang K, Li J. Isothermal amplification for microRNA detection: from the test tube to the cell. Acc Chem Res. 2017;50(4):1059–1068. doi: 10.1021/acs.accounts.7b00040
   PubMed Web of Science ®Google Scholar
• Hamprecht A, Vehreschild JJ, Seifert H, et al. Rapid detection of NDM, KPC and OXA-48 carbapenemases directly from positive blood cultures using a new multiplex immunochromatographic assay. PLoS One. 2018;13(9): e0204157. doi:10.1371/journal.pone.0204157.
   PubMed Web of Science ®Google Scholar
• Ai JW, Zhou X, Xu T, et al. CRISPR-based rapid and ultra-sensitive diagnostic test for Mycobacterium tuberculosis. Emerg Microbes Infect. 2019;8(1):1361–1369. doi: 10.1080/22221751.2019.1664939
   PubMed Web of Science ®Google Scholar
• Li Y, Li S, Wang J, et al. CRISPR/cas systems towards next-generation biosensing. Trends Biotechnol 2019;37(7):730–743. doi: 10.1016/j.tibtech.2018.12.005
   PubMed Web of Science ®Google Scholar
• World Health Organization. Dengue: guidelines for diagnosis, treatment, prevention and control. 2009. WHO, Geneva, Switzerland.
   Google Scholar