Evolution and extensive reassortment of H5 influenza viruses isolated from wild birds in China over the past decade

References

• Lai S, Qin Y, Cowling BJ, et al. Global epidemiology of avian influenza A H5N1 virus infection in humans, 1997–2015: a systematic review of individual case data. Lancet Infect Dis. 2016;16(7):e108–e118. doi: 10.1016/S1473-3099(16)00153-5
   PubMed Web of Science ®Google Scholar
• Li Y, Shi J, Zhong G, et al. Continued evolution of H5N1 influenza viruses in wild birds, domestic poultry, and humans in China from 2004 to 2009. J Virol. 2010 Sep;84(17):8389–8397. doi: 10.1128/JVI.00413-10
   PubMed Web of Science ®Google Scholar
• Zhang R, Chen T, Ou X, et al. Clinical, epidemiological and virological characteristics of the first detected human case of avian influenza A(H5N6) virus. Infect Genet Evol. 2016 Jun;40:236–242. doi: 10.1016/j.meegid.2016.03.010
   PubMed Web of Science ®Google Scholar
• Group WOFHNEW. Continued evolution of highly pathogenic avian influenza A (H5N1): updated nomenclature. Influenza Other Respir Viruses. 2012 Jan;6(1):1–5. doi: 10.1111/j.1750-2659.2011.00298.x
   PubMed Web of Science ®Google Scholar
• Chen H, Li Y, Li Z, et al. Properties and dissemination of H5N1 viruses isolated during an influenza outbreak in migratory waterfowl in western China. J Virol. 2006 Jun;80(12):5976–5983. doi: 10.1128/JVI.00110-06
   PubMed Web of Science ®Google Scholar
• Mohamed W, Ito K, Omori R. Estimating transmission potential of H5N1 viruses among humans in Egypt using phylogeny, genetic distance and sampling time interval. Front Microbiol. 2019;10. doi:10.3389/fmicb.2019.02765.
   Web of Science ®Google Scholar
• Li Y, Liu L, Zhang Y, et al. New avian influenza virus (H5N1) in wild birds, Qinghai, China. Emerg Infect Dis. 2011 Feb;17(2):265–267. doi: 10.3201/eid1702.100732
   PubMed Web of Science ®Google Scholar
• Meng W, Yang Q, Vrancken B, et al. New evidence for the east-west spread of the highly pathogenic avian influenza H5N1 virus between Central Asian and east Asian-Australasian flyways in China. Emerg Microbes Infect. 2019;8(1):823–826. doi: 10.1080/22221751.2019.1623719
   PubMed Web of Science ®Google Scholar
• Lee DH, Torchetti MK, Winker K, et al. Intercontinental spread of Asian-Origin H5N8 to North America through Beringia by migratory birds. J Virol. 2015 Jun;89(12):6521–6524. doi: 10.1128/JVI.00728-15
   PubMed Web of Science ®Google Scholar
• Saito T, Tanikawa T, Uchida Y, et al. Intracontinental and intercontinental dissemination of Asian H5 highly pathogenic avian influenza virus (clade 2.3.4.4) in the winter of 2014–2015. Rev Med Virol. 2015 Nov;25(6):388–405. doi: 10.1002/rmv.1857
   PubMed Web of Science ®Google Scholar
• Yu Z, Gao X, Wang T, et al. Fatal H5N6 avian influenza virus infection in a domestic cat and wild birds in China. Sci Rep. 2015;5. doi:10.1038/srep10704.
   Web of Science ®Google Scholar
• Yang L, Zhao X, Li X, et al. Case report for human infection with a highly pathogenic avian influenza A(H5N6) virus in Beijing, China 2019. Biosafety and Health. 2020;2(1):49–52. doi: 10.1016/j.bsheal.2020.02.003
   Google Scholar
• Drummond AJ, Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol. 2007 Nov 8;7:214. doi: 10.1186/1471-2148-7-214
   PubMed Web of Science ®Google Scholar
• Zhang Q, Shi J, Deng G, et al. H7n9 influenza viruses are transmissible in ferrets by respiratory droplet. Science. 2013;341:410–414. doi: 10.1126/science.1240532
   PubMed Web of Science ®Google Scholar
• Li X, Shi J, Guo J, et al. Genetics, receptor binding property, and transmissibility in mammals of naturally isolated H9N2 avian influenza viruses. Plos Pathog. 2014;10:e1004508. doi: 10.1371/journal.ppat.1004508
   PubMed Web of Science ®Google Scholar
• OIE chapter avian influenza viruses. OIE. 2014.
   Google Scholar
• Hatta M, Gao P, Halfmann P, et al. Molecular basis for high virulence of Hong Kong H5N1 influenza A viruses. Science. 2001;293:1840–1842. doi: 10.1126/science.1062882
   PubMed Web of Science ®Google Scholar
• Jiao P, Tian G, Li Y, et al. A single-amino-acid substitution in the NS1 protein changes the pathogenicity of H5N1 avian influenza viruses in mice. J Virol. 2008;82:1146–1154. doi: 10.1128/JVI.01698-07
   PubMed Web of Science ®Google Scholar
• Long J, Peng D, Liu Y, et al. Virulence of H5N1 avian influenza virus enhanced by a 15-nucleotide deletion in the viral nonstructural gene. Vir Gen. 2008;36:471–478. doi:10.1007/s11262-007-0187-8.
   PubMed Web of Science ®Google Scholar
• Deng G, Shi J, Wang J, et al. Genetics, receptor binding, and virulence in mice of H10N8 influenza viruses isolated from ducks and chickens in live poultry markets in China. J Virol. 2015;89(12):6506–6510. doi: 10.1128/JVI.00017-15
   PubMed Web of Science ®Google Scholar
• Yang L, Zhu W, Li X, et al. Genesis and dissemination of highly pathogenic H5N6 avian inflfluenza viruses. J Virol. 2017;91(5):e02199-16. doi: 10.1128/JVI.02199-16
   PubMed Web of Science ®Google Scholar
• Kim HM, Kim C, Lee N, et al. Pathogenesis of novel reassortant avian influenza virus A (H5N8) isolates in the ferret. Virol. 2015;481:136–141. doi: 10.1016/j.virol.2015.02.042
   PubMed Web of Science ®Google Scholar
• Ma S, Zhang B, Shi J, et al. Amino acid mutations A286V and T437M in the nucleoprotein attenuate H7N9 viruses in mice. J Virol. 2020;94, doi:10.1128/JVI.01530-19.
   Web of Science ®Google Scholar
• Gao Y, Zhang Y, Shinya K, et al. Identification of amino acids in HA and PB2 critical for the transmission of H5N1 avian influenza viruses in a mammalian host. PLoS Pathog. 2009 Dec;5(12):e1000709. doi: 10.1371/journal.ppat.1000709
   PubMed Web of Science ®Google Scholar
• Song J, Feng H, Xu J, et al. The PA protein directly contributes to the virulence of H5N1 avian influenza viruses in domestic ducks. J Virol. 2011 Mar;85(5):2180–2188. doi: 10.1128/JVI.01975-10
   PubMed Web of Science ®Google Scholar