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Coronaviruses

Identification of a recombinant equine coronavirus in donkey, China

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Pages 1010-1013 | Received 22 Dec 2021, Accepted 17 Mar 2022, Published online: 04 Apr 2022

References

  • International Committee on Taxonomy of Viruses. Available from: https://talk.ictvonline.org/ictv-reports/
  • Zhu N, Zhang DY, Wang WL, et al. A novel coronavirus from patients with pneumonia in China, 2019. N Engl J Med. 2020;382(8):727–733.
  • Zhou H, Ji JK, Chen X, et al. Identification of novel bat coronaviruses sheds light on the evolutionary origins of SARS-CoV-2 and related viruses. Cell. 2021;184(17):4380–4391.
  • Forni D, Cagliani R, Clerici M, et al. Molecular evolution of human coronavirus genomes. Trends Microbiol. 2017;25(1):35–48.
  • Hu B, Zeng LP, Yang XL, et al. Discovery of a rich gene pool of bat SARS-related coronaviruses provides new insights into the origin of SARS coronavirus. PLoS Pathog. 2017;12(11):e1006698.
  • Cui J, Li F, Shi ZL. Origin and evolution of pathogenic coronaviruses. Nat Rev Microbiol. 2019;17(3):181–192.
  • Zhao S, Smits C, Schuurman N, et al. Development and validation of a S1 protein-based ELISA for the specific detection of antibodies against equine coronavirus. Viruses. 2019;11(12):1109.
  • Pusterla N. Science-in-brief: equine coronavirus – a decade long journey to investigate an emerging enteric virus of adult horses. Equine Vet J. 2020;52(5):651–653.
  • Hemida MG, Chu DKW, Perera RAPM, et al. Coronavirus infections in horses in Saudi Arabia and Oman. Transbound Emerg Dis. 2017;64(6):2093–2103.
  • Schvartz G, Tirosh-Levy S, Barnum S, et al. Seroprevalence and risk factors for exposure to Equine coronavirus in apparently healthy horses in Israel. Animals (Basel). 2021;11(3):894.
  • Pusterla N, Mapes S, Wademan C, et al. Emerging outbreaks associated with equine coronavirus in adult horses. Vet Microbiol. 2013;162(1):228–231.
  • Chen S, Zhou Y, Chen Y, et al. Fastp: an ultra-fast all-in-one FASTQ preprocessor. Bioinformatics. 2018;34(17):884–890.
  • Haas BJ, Papanicolaou A, Yassour M, et al. De novo transcript sequence reconstruction from RNA-seq using the trinity platform for reference generation and analysis. Nat Protoc. 2013;8(8):1494–1512.
  • Nakamura T, Yamad KD, Tomii K, et al. Parallelization of MAFFT for large-scale multiple sequence alignments. Bioinformatics. 2018;34(14):2490–2492.
  • Zhang JQ, Guy JS, Snijder EJ, et al. Genomic characterization of equine coronavirus. Virology. 2007;369(1):92–104.
  • Nemoto M, Oue Y, Murakami S, et al. Complete genome analysis of equine coronavirus isolated in Japan. Arch Virol. 2015;160(11):2903–2906.
  • Stamatakis A. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 2014;30(9):1312–1313.