References
- Mezzatesta ML, Gona F, Stefani S. Enterobacter cloacae complex: clinical impact and emerging antibiotic resistance. Future Microbiol. 2012 Jul;7(7):887–902.
- Davin-Regli A, Lavigne JP, Pagès JM. Enterobacter spp.: update on taxonomy, clinical aspects, and emerging antimicrobial resistance. Clin Microbiol Rev. 2019 Sep 18;32(4):e00002–19.
- Zong Z, Feng Y, McNally A. Carbapenem and colistin resistance in enterobacter: determinants and clones. Trends Microbiol. 2021 Jun;29(6):473–476.
- Nordmann P, Poirel L. Epidemiology and diagnostics of carbapenem resistance in gram-negative bacteria. Clin Infect Dis. 2019 Nov 13;69(Suppl 7):S521–S528.
- Wu W, Wei L, Feng Y, et al. Precise species identification by whole-genome sequencing of enterobacter bloodstream infection, china. Emerging Infect Dis. 2021 Jan;27(1):161–169.
- Hawken SE, Washer LL, Williams CL, et al. Genomic investigation of a putative endoscope-associated carbapenem-resistant enterobacter cloacae outbreak reveals a wide diversity of circulating strains and resistance mutations. Clin Infect Dis. 2018 Jan 18;66(3):460–463.
- Gomez-Simmonds A, Annavajhala MK, Wang Z, et al. Genomic and geographic context for the evolution of high-risk Carbapenem-resistant Enterobacter cloacae complex clones ST171 and ST78. mBio. 2018 May 29;9(3):e00542–18.
- Peirano G, Matsumura Y, Adams MD, et al. Genomic epidemiology of global Carbapenemase-Producing Enterobacter spp., 2008-2014. Emerging Infect Dis. 2018 Jun;24(6):1010–1019.
- Brettin T, Davis JJ, Disz T, et al. RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes. Sci Rep. 2015 Feb 10;5:8365.
- Boutet E, Lieberherr D, Tognolli M, et al. Uniprotkb/Swiss-Prot, the manually annotated section of the UniProt knowledge base: how to use the entry view. Methods Mol Biol. 2016;1374:23–54.
- O'Leary NA, Wright MW, Brister JR, et al. Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation. Nucleic Acids Res. 2016 Jan 4;44(D1):D733–D745.
- Zankari E, Hasman H, Cosentino S, et al. Identification of acquired antimicrobial resistance genes. J Antimicrob Chemother. 2012 Nov;67(11):2640–2644.
- Liu B, Zheng D, Zhou S, et al. VFDB 2022: a general classification scheme for bacterial virulence factors. Nucleic Acids Res. 2022 Jan 7;50(D1):D912–D917.
- Siguier P, Perochon J, Lestrade L, et al. ISfinder: the reference centre for bacterial insertion sequences. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D32–D36.
- Tansirichaiya S, Rahman MA, Roberts AP. The transposon registry. Mob DNA. 2019;10:40.
- Yang L, Wu AW, Su DH, et al. Resistome analysis of Enterobacter cloacae CY01, an extensively drug-resistant strain producing VIM-1 metallo-β-lactamase from China. Antimicrob Agents Chemother. 2014 Oct;58(10):6328-6330.
- van Duin D, Arias CA, Komarow L, et al. Molecular and clinical epidemiology of carbapenem-resistant Enterobacterales in the USA (CRACKLE-2): a prospective cohort study. Lancet Infect Dis. 2020 Jun;20(6):731–741.
- Xiao X, Zeng F, Li R, et al. Subinhibitory concentration of colistin promotes the conjugation frequencies of mcr-1- and blaNDM-5-positive plasmids. Microbiol Spectr. 2022 Mar 1:e0216021.
- Chen R, Liu Z, Xu P, et al. Deciphering the epidemiological characteristics and molecular features of blaKPC-2- or blaNDM-1-positive Klebsiella pneumoniae isolates in a newly established hospital. Front Microbiol. 2021;12:741093.
- Poirel L, Bonnin RA, Boulanger A, et al. Tn125-related acquisition of blaNDM-like genes in Acinetobacter baumannii. Antimicrob Agents Chemother. 2012 Feb;56(2):1087–1089.
- Acman M, Wang R, van Dorp L, et al. Role of mobile genetic elements in the global dissemination of the carbapenem resistance gene blaNDM. Nat Commun. 2022 Mar 3;13(1):1131.
- Wu W, Feng Y, Tang G, et al. Ndm metallo-β-lactamases and their bacterial producers in health care settings. Clin Microbiol Rev. 2019 Mar 20;32(2)::e00115–18.
- Pereira EC, Anacker M, Houseman J, et al. A cluster of carbapenemase-producing Enterobacter cloacae complex ST171 at a tertiary care center demonstrating an ongoing regional threat. Am J Infect Control. 2019 Jul;47(7):767–772.
- Baomo L, Lili S, Moran RA, et al. Temperature-regulated IncX3 plasmid characteristics and the role of plasmid-encoded H-NS in thermoregulation. Front Microbiol. 2021;12:765492.