Metabolomic Profiling of an Indian Oral Squamous Cell Carcinoma Subset

References

• Shah, S., Shah, S., Padh, H. and Kalia, K. (2015). Genetic alterations of the PIK3CA oncogene in human oral squamous cell carcinoma in an Indian population. Oral Surg. Oral Med. Oral Pathol. Oral Radiol. 120(5): 628-635.
   PubMed Web of Science ®Google Scholar
• Sejal, S. (2016). Association of genetic alterations of the PI3K AKT pathway with oral squamous cell carcinoma in an Indian subset. Ph.D. thesis. Sardar Patel University, Gujarat. 140p.
   Google Scholar
• Bray, F., Ferlay, J., Soerjomataram, I., Siegel, R.L., Torre, L.A. and Jemal, A. (2018). Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries. CA-Cancer J. Clin. 68(6): 394-424.
   PubMed Web of Science ®Google Scholar
• Mork, J., Lie, A.K., Glattre, E., Clark, S., Hallmans, G., Jellum, E., Koskela, P., Møller, B., Pukkala, E., Schiller, J.T. and Wang, Z. (2001). Human papillomavirus infection as a risk factor for squamous-cell carcinoma of the head and neck. New Engl. J. of Med. 344(15): 1125-1131.
   PubMed Web of Science ®Google Scholar
• Shah, S., Jajal, D., Mishra, G. and Kalia, K. (2017). Genetic profile of PTEN gene in Indian oral squamous cell carcinoma primary tumors. J. Oral Pathol. Med. 46(2): 106-111.
   PubMed Web of Science ®Google Scholar
• Shah, S., Mishra, G. and Kalia, K. (2018). Single nucleotide polymorphism rs17849071 G/T in the PIK3CA gene is inversely associated with oral cancer. Oral Cancer. 2(3-4): 83-89.
   Google Scholar
• Patel, A., Gupta, V. and Shah, S. (2021). Role of human papillomavirus and it’s association with an Indian oral squamous cell carcinoma subjects. Sci rep-UK (Pre-print). DOI: 10.21203/rs.3.rs-574115/v1
   Google Scholar
• Turakhiya, B., Patel, A. and Shah, S. (2018). Human Papillomavirus associated burden of Oral Squamous Cell Carcinoma in an Indian inhabitants. International Journal of Scientific Research and Reviews. 7(1): 81-101.
   Google Scholar
• Vucic, E.A., Thu, K.L., Robison, K., Rybaczyk, L.A., Chari, R., Alvarez, C.E. and Lam, W.L. (2012). Translating cancer ‘omics’ to improved outcomes. Genome Res. 22(2): 188-195.
   PubMed Web of Science ®Google Scholar
• Suzuki, M., Nishiumi, S., Matsubara, A., Azuma, T. and Yoshida, M. (2014). Metabolome analysis for discovering biomarkers of gastroenterological cancer. J. Chromatogr. B. 966: 59-69.
   PubMed Web of Science ®Google Scholar
• Fiehn, O. (2002). Metabolomics-the link between genotypes and phenotypes. In Functional genomics Springer, Dordrecht. 155-171.
   Google Scholar
• Wishart, D.S. (2015). Is cancer a genetic disease or a metabolic disease?. EBioMedicine. 2(6): 478-479.
   PubMed Web of Science ®Google Scholar
• Madsen, R., Lundstedt, T. and Trygg, J. (2010). Chemometrics in metabolomics-a review in human disease diagnosis. Anal. Chim. Acta. 659(1-2): 23-33.
   PubMed Web of Science ®Google Scholar
• Yang, X.H., Jing, Y., Wang, S., Ding, F., Zhang, X.X., Chen, S. and Ni, Y.H. (2020). Integrated Non-targeted and Targeted Metabolomics Uncovers Amino Acid Markers of Oral Squamous Cell Carcinoma. Frontiers in Oncology. 10: 426.
   PubMed Web of Science ®Google Scholar
• Bouza, M., Gonzalez-Soto, J., Pereiro, R., de Vicente, J.C. and Sanz-Medel, A. (2017). Exhaled breath and oral cavity VOCs as potential biomarkers in oral cancer patients. J. Breath Res. 11(1): 016015.
   PubMed Web of Science ®Google Scholar
• Cicolella, A. (2008). Volatile Organic Compounds (VOC): definition, classification and properties. Rev. Mal. Respir. 25(2): 155-163.
   PubMed Web of Science ®Google Scholar
• Lubes, G. and Goodarzi, M. (2018). GC-MS based metabolomics used for the identification of cancer volatile organic compounds as biomarkers. J. Pharmaceut. Biomed. 147: 313-322.
   PubMed Web of Science ®Google Scholar
• Monedeiro, F., dos Reis, R.B., Peria, F.M., Sares, C.T.G. and De Martinis, B.S. (2020). Investigation of sweat VOC profiles in assessment of cancer biomarkers using HS-GC-MS. J. Breath Res. 14(2): 026009.
   PubMed Web of Science ®Google Scholar
• Risby, T.H. (2002). Volatile organic compounds as markers in normal and diseased states. Nato Sci. Ser. I. Life. 284: 113-122.
   Google Scholar
• Shirasu, M. and Touhara, K. (2011). The scent of disease: volatile organic compounds of the human body related to disease and disorder. J. Biochem. 150(3): 257-266.
   PubMed Web of Science ®Google Scholar
• Dummer, J., Storer, M., Swanney, M., McEwan, M., Scott-Thomas, A., Bhandari, S. and Epton, M. (2011). Analysis of biogenic volatile organic compounds in human health and disease. TrAC-Trends Anal. Chem. 30(7): 960-967.
   Web of Science ®Google Scholar
• Tiziani, S., Lopes, V. and Günther, U.L. (2009). Early stage diagnosis of oral cancer using 1H NMR-based metabolomics. Neoplasia. 11(3): 269-IN10.
   PubMed Web of Science ®Google Scholar
• Musharraf, S.G., Shahid, N., Naqvi, S.M.A., Saleem, M., Siddiqui, A.J. and Ali, A. (2016). Metabolite profiling of preneoplastic and neoplastic lesions of oral cavity tissue samples revealed a biomarker pattern. Sci. Rep-UK. 6: 38985.
   PubMed Web of Science ®Google Scholar
• Somashekar, B.S., Kamarajan, P., Danciu, T., Kapila, Y.L., Chinnaiyan, A.M., Rajendiran, T.M. and Ramamoorthy, A. (2011). Magic angle spinning NMR-based metabolic profiling of head and neck squamous cell carcinoma tissues. J. Proteome Res. 10(11): 5232-5241.
   PubMed Web of Science ®Google Scholar
• Mukherji, S.K., Schiro, S., Castillo, M., Kwock, L., Muller, K.E. and Blackstock, W. (1997). Proton MR Spectroscopy of squamous cell carcinoma of the extracranial head and neck: in vitro and in vivo studies. AM. J. Neuroradiol. 18(6): 1057-1072.
   PubMed Web of Science ®Google Scholar
• El-Sayed, S., Bezabeh, T., Odlum, O., Patel, R., Ahing, S., MacDonald, K. and Smith, I.C. (2002). An ex vivo study exploring the diagnostic potential of 1H magnetic resonance spectroscopy in squamous cell carcinoma of the head and neck region. Head & Neck. 24(8): 766-772.
   PubMed Web of Science ®Google Scholar
• Srivastava, S., Roy, R., Gupta, V., Tiwari, A., Srivastava, A.N. and Sonkar, A.A. (2011). Proton HR-MAS MR spectroscopy of oral squamous cell carcinoma tissues: an ex vivo study to identify malignancy induced metabolic fingerprints. Metabolomics. 7(2): 278-288.
   Web of Science ®Google Scholar
• Sugimoto, M., Wong, D.T., Hirayama, A., Soga, T. and Tomita, M. (2010). Capillary electrophoresis mass spectrometry-based saliva metabolomics identified oral, breast and pancreatic cancer-specific profiles. Metabolomics. 6(1): 78-95.
   PubMed Web of Science ®Google Scholar
• Khuhawar, M.Y., Memon, A.A., Jaipal, P.D. and Bhanger, M.I. (1999). Capillary gas chromatographic determination of putrescine and cadaverine in serum of cancer patients using trifluoroacetylacetone as derivatizing reagent. J. Chromatogr. B. 723(1-2): 17-24.
   PubMedGoogle Scholar
• Okamura, M., Kobayashi, M., Suzuki, F., Shimada, J. and Sakagami, H. (2007). Induction of cell death by combination treatment with cisplatin and 5-fluorouracil in a human oral squamous cell carcinoma cell line. Anticancer Res. 27(5A): 3331-3337.
   PubMed Web of Science ®Google Scholar
• Moros, G., Chatziioannou, A.C., Gika, H.G., Raikos, N. and Theodoridis, G. (2017). Investigation of the derivatization conditions for GC-MS metabolomics of biological samples. Bioanalysis. 9(1): 53-65.
   PubMed Web of Science ®Google Scholar
• Shigeyama, H., Wang, T., Ichinose, M., Ansai, T. and Lee, S.W. (2019). Identification of volatile metabolites in human saliva from patients with oral squamous cell carcinoma via zeolite-based thin-film microextraction coupled with GC-MS. J. Chromatogra. B. 1104: 49-58.
   PubMed Web of Science ®Google Scholar
• Naz, S., Moreira dos Santos, D.C., García, A. and Barbas, C. (2014). Analytical protocols based on LC-MS, GC-MS and CE-MS for nontargeted metabolomics of biological tissues. Bioanalysis. 6(12): 1657-1677.
   PubMed Web of Science ®Google Scholar
• Kanehisa, M. and Goto, S. (2000). KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 28(1): 27-30.
   PubMed Web of Science ®Google Scholar
• Wishart, D.S., Knox, C., Guo, A.C., Eisner, R., Young, N., Gautam, B., Hau, D.D., Psychogios, N., Dong, E., Bouatra, S. and Mandal, R. (2009). HMDB: A knowledgebase for the human metabolome. Nucleic Acids Res. 37(suppl_1): D603-D610.
   PubMedGoogle Scholar
• Sa'ad, H., Peppelenbosch, M.P., Roelofsen, H., Vonk, R.J. and Venema, K. (2010). Biological effects of propionic acid in humans; metabolism, potential applications and underlying mechanisms. BBA-Mol. Cell Biol. L. 1801(11): 1175-1183.
   Google Scholar
• Rodgman, A. and Perfetti, T.A. (2016). The chemical components of tobacco and tobacco smoke. 2nd ed. CRC press. 2332 p.
   Google Scholar
• IARC. (1999). Working Group on the Evaluation of Carcinogenic Risks to Humans, International Agency for Research on Cancer and World Health Organization. Re-evaluation of some organic chemicals, hydrazine and hydrogen peroxide. IARC.
   Google Scholar