Persistence of human papillomavirus 16, 18 and 52 variants in Inuit women from Northern Quebec, Canada

References

• Walboomers JM, Jacobs MV, Manos MM, et al. Human papillomavirus is a necessary cause of invasive cervical cancer worldwide. J Pathol. 1999;189(1):12–7.
   PubMed Web of Science ®Google Scholar
• De Villiers E-M, Fauquet C, Broker TR, et al. Classification of papillomaviruses. Virol. 2004;324(1):17–27.
   PubMed Web of Science ®Google Scholar
• Trottier H, Franco EL. The epidemiology of genital human papillomavirus infection. Vaccine. 2006;24:S4–S15.
   Web of Science ®Google Scholar
• Smith B, Chen Z, Reimers L, et al. Sequence imputation of HPV16 genomes for genetic association studies. PLoS ONE. 2011;6(6):e21375. DOI:10.1371/journal.pone.0021375
   Web of Science ®Google Scholar
• Zur Hausen H. Papillomaviruses and cancer: from basic studies to clinical application. Nat Rev Cancer. 2002;2(5):342–350DOI:10.1038/nrc798
   PubMed Web of Science ®Google Scholar
• Koshiol J, Lindsay L, Pimenta JM, et al. Persistent human papillomavirus infection and cervical neoplasia: a systematic review and meta-analysis. Am J Epidemiol. 2008;168(2):123–137.
   PubMed Web of Science ®Google Scholar
• Goodman MT, Shvetsov YB, McDuffie K, et al. Prevalence, acquisition, and clearance of cervical human papillomavirus infection among women with normal cytology: hawaii human papillomavirus cohort study. Cancer Res. 2008;68(21):8813–8824.
   Web of Science ®Google Scholar
• Ho GY, Bierman R, Beardsley L, et al. Natural history of cervicovaginal papillomavirus infection in young women. N Engl J Med. 1998;338(7):423–428.
   PubMed Web of Science ®Google Scholar
• Baseman JG, Koutsky LA. The epidemiology of human papillomavirus infections. J Clin Virol. 2005;32:16–24.
   PubMed Web of Science ®Google Scholar
• Broccolo F. A multiplex real-time PCR-platform integrated into automated extraction method for the rapid detection and measurement of oncogenic HPV type-specific viral DNA load from cervical samples. Methods Mol Biol Epub 2014/ 04/18 PubMed PMID: 24740223. 2014;1160:87–97. DOI:10.1007/978-1-4939-0733-5_8
   Google Scholar
• Miranda PM, Silva NN, Pitol BC, et al. Persistence or clearance of human papillomavirus infections in women in Ouro Preto, Brazil. Biomed Res Int. 2013;2013:578276. Epub 2013/12/04. PubMed PMID: 24298551; PubMed Central PMCID: PMCPmc3835752. DOI:10.1155/2013/578276
   PubMed Web of Science ®Google Scholar
• Metcalfe S, Roger M, Faucher MC, et al. The association between human leukocyte antigen (HLA)-G polymorphisms and human papillomavirus (HPV) infection in Inuit women of northern Quebec. PubMed PMID: 23994586 Hum Immunol. 2013;74(12):1610–1615. DOI:10.1016/j.humimm.2013.08.279
   Web of Science ®Google Scholar
• Ho L, Chan S, Burk R, et al. The genetic drift of human papillomavirus type 16 is a means of reconstructing prehistoric viral spread and the movement of ancient human populations. J Virol. 1993;67(11):6413–6423
   PubMed Web of Science ®Google Scholar
• Raiol T, Wyant PS, de Amorim RMS, et al. Genetic variability and phylogeny of the high-risk HPV-31, −33, −35, −52, and −58 in central Brazil. J Med Virol. 2009;81(4):685–692. DOI:10.1002/jmv.21432
   Web of Science ®Google Scholar
• Zhang C, Park J-S, Grce M, et al. Geographical distribution and risk association of human papillomavirus genotype 52–variant lineages. J Infect Dis. 2014;210(10):1600–1604. DOI:10.1093/infdis/jiu310
   Web of Science ®Google Scholar
• Hildesheim A, Schiffman M, Bromley C, et al. Human papillomavirus type 16 variants and risk of cervical cancer. J Natl Cancer Inst. 2001;93(4):315–318.
   PubMedGoogle Scholar
• Cuzick J, Arbyn M, Sankaranarayanan R, et al. Overview of human papillomavirus-based and other novel options for cervical cancer screening in developed and developing countries. Vaccine. 2008;26:K29–K41.
   PubMed Web of Science ®Google Scholar
• Mirabello L, Yeager M, Cullen M, et al. HPV16 sublineage associations with histology-specific cancer risk using HPV whole-genome sequences in 3200 women. Jnci. 2016;108:9.
   Google Scholar
• Villa LL, Sichero L, Rahal P, et al. Molecular variants of human papillomavirus types 16 and 18 preferentially associated with cervical neoplasia. J Gen Virol. 2000;81(Pt 12):2959–2968. Epub 2000/11/22.PubMed PMID: 11086127.
   Google Scholar
• Schiffman M, Rodriguez AC, Chen Z, et al. A population-based prospective study of carcinogenic human papillomavirus variant lineages, viral persistence, and cervical neoplasia. Cancer Res. 2010;70(8):3159–3169.
   PubMed Web of Science ®Google Scholar
• Xi LF, Kiviat NB, Hildesheim A, et al. Human papillomavirus type 16 and 18 variants: race-related distribution and persistence. J Natl Cancer Inst. 2006;98(15):1045–1052.
   PubMedGoogle Scholar
• Louchini R, Beaupre M. Cancer incidence and mortality among Aboriginal people living on reserves and northern villages in Quebec, 1988–2004. Int J Circumpolar Health. 2008;67(5): 445–451. Epub 2009/ 02/04.PubMed PMID: 19186765.
   PubMed Web of Science ®Google Scholar
• Decker KM, Demers AA, Kliewer EV, et al. Pap test use and cervical cancer incidence in first nations women living in Manitoba. Cancer Prev Res (Phila). 2014. Epub 2014/ 11/19. PubMed PMID: 25403849. DOI:10.1158/1940-6207.capr-14-0277.
   Web of Science ®Google Scholar
• Hamlin-Douglas LK, Coutlee F, Roger M, et al. Prevalence and age distribution of human papillomavirus infection in a population of Inuit women in Nunavik, Quebec. Cancer Epidemiol Biomarkers Prev. 2008;17(11):3141–3149. Epub 2008/ 11/08 PubMed PMID: 18990756. DOI:10.1158/1055-9965.epi-08-0625
   Web of Science ®Google Scholar
• Bennett R, Cerigo H, Coutlée F, et al. Incidence, persistence, and determinants of human papillomavirus infection in a population of Inuit women in Northern Quebec. Sex Transm Dis. 2015;42(5):272–278.
   PubMed Web of Science ®Google Scholar
• Gauthier B, Coutlée F, Franco E, et al. Human papillomavirus (HPV) variants among Inuit women in Northern Quebec, Canada. Int J Circumpolar Health. 2015;74. DOI:10.3402/ijch.v74.29482
   Web of Science ®Google Scholar
• Xi LF, Schiffman M, Koutsky LA, et al. Lineages of oncogenic human papillomavirus types other than type 16 and 18 and risk for cervical intraepithelial neoplasia. J Natl Cancer Inst. 2014;106(10):dju270.
   Google Scholar
• Xi LF, Schiffman M, Koutsky LA, et al. Persistence of newly detected human papillomavirus type 31 infection, stratified by variant lineage. Int J Cancer. 2013;132(3):549–555.
   Web of Science ®Google Scholar
• Tamura K, Peterson D, Peterson N, et al. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 2011;28(10):2731–2739. DOI:10.1093/molbev/msr121
   PubMed Web of Science ®Google Scholar
• Burk RD, Harari A, Chen Z. Human papillomavirus genome variants. Virology. 2013;445(1–2):232–243. Epub 2013/09/04. PubMed PMID: 23998342; PubMed Central PMCID: PMCPmc3979972. DOI:10.1016/j.virol.2013.07.018
   PubMed Web of Science ®Google Scholar
• Arias-Pulido H, Peyton CL, Torrez-Martinez N, et al. Human papillomavirus type 18 variant lineages in USA populations characterized by sequence analysis of LCR-E6, E2, and L1 regions. Virology. 2005;338(1):22–34. Epub 2005/06/07. PubMed PMID: 15936050. DOI:10.1016/j.virol.2013.07.018
   PubMed Web of Science ®Google Scholar
• Chen Z, Schiffman M, Herrero R, et al. Evolution and taxonomic classification of human papillomavirus 16 (HPV16)-related variant genomes: HPV31, HPV33, HPV35, HPV52, HPV58 and HPV67. PloS one. 2011;6(5):e20183. DOI:10.1016/j.virol.2005.04.022
   Web of Science ®Google Scholar
• R; A language and environment for statistical computing. R. Founcdation for Statistical Computing [Internet]. 2014.
   Google Scholar
• BMA: Bayesian Model Averaging. R. package version 3.18.1 [Internet]. 2014.
   Google Scholar
• A package for survival analysis in S_. R package version 2.37-7. [Internet]. 2014.
   Google Scholar
• van Burren S, Groothuis-Oudshoorn K. Mice: multivariate imputation by chained equations in R. J Stat Softw. 2011;45(3):1–67.
   Web of Science ®Google Scholar
• Muñoz N, Méndez F, Posso H, et al. Incidence, duration, and determinants of cervical human papillomavirus infection in a cohort of Colombian women with normal cytological results. J Infect Dis. 2004;190(12):2077–2087.
   PubMed Web of Science ®Google Scholar
• Richardson H, Kelsall G, Tellier P, et al. The natural history of type-specific human papillomavirus infections in female university students. Cancer Epidemiol Biomarkers Prev. 2003;12(6):485–490.
   PubMed Web of Science ®Google Scholar
• Hamlin-Douglas LK, Coutlee F, Roger M, et al. Determinants of human papillomavirus infection among Inuit women of northern Quebec, Canada. Sex Transm Dis. 2010;37(6):377–381. Epub 2010/05/18. PubMed PMID: 20473246. DOI:10.1097/OLQ.0b013e3181cc4d22
   Web of Science ®Google Scholar
• Sichero L, Ferreira S, Trottier H, et al. High grade cervical lesions are caused preferentially by non-European variants of HPVs 16 and 18. Int J Cancer. 2007;120(8):1763–1768. Epub 2007/01/19. PubMed PMID: 17230525. DOI:10.1002/ijc.22481
   PubMed Web of Science ®Google Scholar
• Ogilvie GS, van Niekerk D, Krajden M, et al. Effect of screening with primary cervical HPV testing vs cytology testing on high-grade cervical intraepithelial neoplasia at 48 months. JAMA. 2018;320(1):43. DOI:10.1001/jama.2018.7464
   PubMed Web of Science ®Google Scholar