220
Views
6
CrossRef citations to date
0
Altmetric
Case Report

Next-generation DNA sequencing analysis of two Streptococcus suis ST28 isolates associated with human infective endocarditis and meningitis in Gunma, Japan: a case report

, , , , , , & show all
Pages 62-66 | Received 25 Mar 2018, Accepted 14 Jun 2018, Published online: 15 Aug 2018

References

  • Gottschalk M, Segura M, Xu J. Streptococcus suis infections in humans: the Chinese experience and the situation in North America. Anim Health Res Rev. 2007;8:29–45.
  • Lun ZR, Wang QP, Chen XG, et al. Streptococcus suis: an emerging zoonotic pathogen. Lancet Infect Dis. 2007;7:201–209.
  • Arends JP, Zanen HC. Meningitis caused by Streptococcus suis in humans. Rev Infect Dis. 1988;10:131–137.
  • Huang YT, Teng LJ, Ho SW, et al. Streptococcus suis infection. J Microbiol Immunol Infect. 2005;38:306–313.
  • Wertheim HF, Nghia HD, Taylor W, et al. Streptococcus suis: an emerging human pathogen. Clin Infect Dis. 2009;48:617–625.
  • Yu H, Jing H, Chen Z, et al. Streptococcus suis study groups. Human Streptococcus suis outbreak, Sichuan, China. Emerg Infect Dis. 2006;12:914–920.
  • Mai NT, Hoa NT, Nga TV, et al. Streptococcus suis meningitis in adults in Vietnam. Clin Infect Dis. 2008;46:659–667.
  • King SJ, Leigh JA, Heath PJ, et al. Development of a multilocus sequence typing scheme for the pig pathogen Streptococcus suis: identification of virulent clones and potential capsular serotype exchange. J Clin Microbiol. 2002;40:3671–3380.
  • Ye C, Zheng H, Zhang J, et al. Clinical, experimental, and genomic differences between intermediately pathogenic, highly pathogenic, and epidemic Streptococcus suis. J Infect Dis. 2009;199:97–107.
  • Ye C, Zhu X, Jing H, et al. Streptococcus suis sequence type 7 outbreak, Sichuan, China. Emerg Infect Dis. 2006;12:1203–1208.
  • Fittipaldi N, Xu J, Lacouture S, et al. Lineage and virulence of Streptococcus suis serotype 2 isolates from North America. Emerg Infect Dis. 2011;17:2239–2244.
  • Goyette-Desjardins G, Auger JP, Xu J, et al. Streptococcus suis, an important pig pathogen and emerging zoonotic agent-an update on the worldwide distribution based on serotyping and sequence typing. Emerg Microbes Infect. 2014;3:e45.
  • Matsuo H, Sakamoto S. Purulent meningitis caused by Streptococcus suis in a pig breeder. Kansenshogaku Zasshi. 2003;77:340–342.
  • Ishigaki K, Nakamura A, Iwabuchi S, et al. A case of Streptococcus suis endocarditis, probably bovine-transmitted, complicated by pulmonary embolism and spondylitis. Kansenshogaku Zasshi. 2009;83:544–548. Japanese.
  • Chang B, Wada A, Ikebe T, et al. Characteristics of Streptococcus suis isolated from patients in Japan. Jpn J Infect Dis. 2006;59:397–399.
  • Coil D, Jospin G, Darling AE. A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data. Bioinformatics. 2015;31:587–589.
  • Zankari E, Hasman H, Cosentino S, et al. Identification of acquired antimicrobial resistance genes. J Antimicrob Chemother. 2012;67:2640–2644.
  • Joensen KG, Scheutz F, Lund O, et al. Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli. J Clin Microbiol. 2014;52:1501–1510.
  • Li H, Durbin R. Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics. 2010;26:589–595.
  • Koboldt DC, Chen K, Wylie T, et al. VarScan: variant detection in massively parallel sequencing of individual and pooled samples. Bioinformatics. 2009;25:2283–2285.
  • Stamatakis A. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 2014;30:1312–1313.
  • Athey TB, Auger JP, Teatero S, et al. Complex population structure and virulence differences among serotype 2 Streptococcus suis strains belonging to sequence type 28. PLoS One. 2015;10:e0137760.
  • Campbell F, Strang C, Ferguson N, et al. When are pathogen genome sequences informative of transmission events? PLoS Pathog. 2018;14:e1006885.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.