Molecular characterization of mahogany tree (Swietenia macrophylla King, Meliaceae) in the remnant natural forest of Ecuador

References

• Gentry A. A field guide to the families and genera of woody plants of northwest South America (Colombia, Ecuador, Peru), with supplementary notes on herbaceous taxa. University of Chicago Press; 1996. p. 920.
   Google Scholar
• Jiménez Q, Estrada A, Rodríguez A, Arroyo, P. Manual dendrológico de Costa Rica. 2nd 306 ed. 1999.
   Google Scholar
• Gillies ACM, Cornelius JP, Newton AC, et al. Genetic variation in costa Rican populations of the tropical timber species Cedrela odorata L., assessed using RAPDs. Mol Ecol. 1997;6(12):1133–1145.
   Web of Science ®Google Scholar
• Gullison RE, Panfil S, Strouse J, et al. Ecology and management of mahogany (Swietenia macrophylla king) in the chimanes forest, beni, Bolivia. Bot J Linn Soc. 1996;122:9–34.
   Web of Science ®Google Scholar
• Silva DC, Pastore TCM, Soares LF, et al. Determination of the country of origin of true mahogany (Swietenia macrophylla king) wood in five Latin American countries using handheld NIR devices and multivariate data analysis. Holzforschung. 2018;72(7):521–530.
   Web of Science ®Google Scholar
• Rodan BD, Campbell FT. CITES and the sustainable management of Swietenia macrophylla king. Bot J Linn Soc. 1996;122(1):83–87.
   Web of Science ®Google Scholar
• Carranza Patiño MS, Reyes Morán H, Mora Silva WF, et al. Propagación clonal in vitro de Swietenia macrophylla King (Caoba). Cienc y Tecnol. 2013;6(2):1–8.
   Google Scholar
• Novick RR, Dick CW, Lemes MR, et al. Genetic structure of Mesoamerican populations of big-leaf mahogany (Swietenia macrophylla) inferred from microsatellite analysis. Mol Ecol. 2003;12(11):2885–2893.
   PubMed Web of Science ®Google Scholar
• Lemes MR, Gribel R, Proctor J, et al. Population genetic structure of mahogany (Swietenia macrophylla King, Meliaceae) across the Brazilian Amazon, based on variation at microsatellite loci: implications for conservation. Mol Ecol. 2003;12(11):2875–2883.
   PubMed Web of Science ®Google Scholar
• Lemes MR, Brondani RPV, Grattapaglia D. Multiplexed systems of microsatellite markers for genetic analysis of mahogany, Swietenia macrophylla King (Meliaceae), a threatened neotropical timber species. J Hered. 2002;93(4):287–291.
   PubMed Web of Science ®Google Scholar
• Alcalá RE, Salazar H, Gutiérrez-Granados G, et al. Genetic structure and genetic diversity of Swietenia macrophylla (Meliaceae): implications for sustainable forest management in Mexico. J Trop For Sci. 2014;26(1):142–152.
   Web of Science ®Google Scholar
• Garcia-Gonzales R, Pico-Mendoza J, Quiroz K, et al. Development and characterization of microsatellite markers in gaultheria pumila Lf. (Ericaceae). Biol Res [Internet]. 2018;51(1):42.
   PubMedGoogle Scholar
• Lemes MR, Esashika T, Gaoue OG. Microsatellites for mahoganies: twelve new loci for Swietenia macrophylla and its high transferability to khaya senegalensis. Am J Bot. 2011;98(8):e207–e209.
   PubMed Web of Science ®Google Scholar
• Pakull B, Schindler L, Mader M, et al. Development of nuclear SNP markers for mahogany (Swietenia spp.). Conserv Genet Resour [Internet]. 2020; (0123456789) 343:8–10.
   Google Scholar
• Céspedes M, Gutierrez MV, Holbrook NM, et al. Restoration of genetic diversity in the dry forest tree Swietenia macrophylla (Meliaceae) after pasture abandonment in Costa Rica. Mol Ecol. 2003;12(12):3201–3212.
   PubMed Web of Science ®Google Scholar
• Lowe AJ, Jourde B, Breyne P, et al. Fine-scale genetic structure and gene flow within Costa Rican populations of mahogany (Swietenia macrophylla). Heredity (Edinb). 2003;90(3):268–275.
   PubMed Web of Science ®Google Scholar
• Mariac C, Trouslot P, Poteaux C, et al. Chloroplast DNA extraction from herbaceous and woody plants for direct restriction fragment length polymorphism analysis. Biorechniques. 2000;28(1):110 3.
   PubMed Web of Science ®Google Scholar
• Morillo Velasteguí E, Miño Castro G. Marcadores moleculares en biotecnología agrícola: manual de técnicas y procedimientos en INIAP. Quito: Instituto Nacional Autónomo de Investigaciones Agropecuarias, Estación Experimental Santa Catalina; 2011. p. 121.
   Google Scholar
• Yeh FC, Boyle T, Rongcai Y, et al. POPGENE, version 1.31. A Microsoft window based freeware for population genetic analysis. 1999;(August).
   Google Scholar
• Peakall R, Smouse PE. GENALEX 6: genetic analysis 364 in excel. Population genetic software for teaching and research. Mol Ecol Notes. 2006;6(1):288–295.
   Web of Science ®Google Scholar
• Weir B, Cockerham C. Estimating F-Statistics for the analysis of population structure. Evolution (N Y). 1984;38(6):1358–1370.
   PubMed Web of Science ®Google Scholar
• Goudet J. FSTAT (Version 1.2): a computer program to calculate F-statistics. J Hered. 1995;86(6):485–486.
   Web of Science ®Google Scholar
• Raymond M, Rousset F. Genpop 1.2 population genetics software for exact test and ecumenicism. Comput notes. 1995;248–249.
   Google Scholar
• Pritchard JK, Stephens M, Donnelly P. Inference of population structure using multilocus genotype data. Genetics. 2000;155(2):945–959.
   PubMed Web of Science ®Google Scholar
• Earl DA, vonHoldt BM. STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conserv Genet Resour. 2012;4(2):359–361.
   Web of Science ®Google Scholar
• Peakall R, Ebert D, Cunningham R, et al. Mark-recapture by genetic tagging reveals restricted movements by bush rats (Rattus fuscipes) in a fragmented landscape. J Zool. 2006;268(2):207–216.
   Web of Science ®Google Scholar
• Wu B, Zhong GY, Yue JQ, et al. Identification of pummelo cultivars by using a panel of 25 selected SNPs and 12 DNA segments. PLoS One. 2014;9(4): 1–17.
   Web of Science ®Google Scholar
• Tessier C, David J, This P, et al. Optimization of the choice of molecular markers for varietal identification in Vitis vinifera L. Theor Appl Genet. 1999;98(1):171–177.
   Web of Science ®Google Scholar
• Guzmán FA, Moore S, de Vicente MC, et al. Microsatellites to enhance characterization, conservation and breeding value of capsicum germplasm. Genet Resour Crop Evol. 2020;67(3):569–585.
   Web of Science ®Google Scholar
• Lynch M, Ritland K. Estimation of pairwise relatedness with molecular markers. Genetics. 1999;152(4):1753–1766.
   PubMed Web of Science ®Google Scholar
• Peakall R, Smouse PE. GenALEx 6.5: genetic analysis in excel. Population genetic software for teaching and 385 research-an updates. Bioinformatics. 2012;28(19):2537–2539.
   PubMed Web of Science ®Google Scholar
• Cuesta F, Peralvo M, Merino-Viteri A, et al. Priority areas for biodiversity conservation in mainland Ecuador. Neotrop Biodivers [Internet]. 2017;3(1):93–106.
   Google Scholar
• Degen B, Ward SE, Lemes MR, et al. Verifying the geographic origin of mahogany (Swietenia macrophylla King) with DNA-fingerprints. Forensic Sci Int Genet [Internet]. 2013;7(1):55–62.
   PubMed Web of Science ®Google Scholar
• de Oliveira SS, Campos T, Sebbenn AM, et al. Using spatial genetic structure of a population of Swietenia macrophylla King to integrate genetic diversity into management strategies in Southwestern Amazon. For Ecol Manage [Internet]. 2020;464(February):118040.
   Google Scholar
• Trujillo-Sierra JE, Delgado-Valerio P, Ramírez-Morillo I, et al. Variación genética en poblaciones mexicanas de Swietenia macrophylla King, una especie tropical en expansión geográfica reciente. Bot Sci [Internet]. 2013;91(3):307–317.
   Google Scholar
• Leão NVM, Felipe SHS, Emídio-Silva C, et al. Morphometric diversity between fruits and seeds of mahogany trees (Swietenia macrophylla King.) from parakanã indigenous land, Pará State, Brazil. Aust J Crop Sci. 2018;12(3):435–443. 406
   Google Scholar
• Gillies ACM, Navarro C, Lowe AJ, et al. Genetic diversity in Mesoamerican populations of mahogany (Swietenia macrophylla), assessed using RAPDs. Heredity (Edinb). 1999;83(6):722–732.
   PubMedGoogle Scholar
• Basu A, Ghosh A, Pal S, et al. Pollination if the mahogany trees (Swietenia mahagoni) by an ovipositing thysanopteran insect (Priesneriola). Bionotes. 2013;15:88–89.
   Google Scholar
• Larekeng SH, Restu M, Arsyad MA. Observation of morphological and physiological characteristics on abangares mahogany (Swietenia macrophylla King.) in South Sulawesi. IOP Conf Ser Earth Environ Sci. 2019;270(1):012022. Mutia.
   Google Scholar
• Pramono AA, Syamsuwida D, Putri KP. Variation of seed sizes and its effect on germination and seedling growth of mahogany (Swietenia macrophylla). Biodiversitas. 2019;20(9):2576–2582.
   Google Scholar
• Szpiech ZA, Rosenberg NA. On the size distribution of private microsatellite alleles. Theor Popul Biol [Internet]. 2011;80(2):100–113.
   PubMed Web of Science ®Google Scholar
• Lemes MR, Grattapaglia D, Grogan J, et al. Flexible mating system in a logged population of Swietenia macrophylla king (Meliaceae): implications for the management of a threatened neotropical tree species. Plant Ecol. 2007;192(2):169–179.
   Web of Science ®Google Scholar
• Breed MF, Gardner MG, Ottewell KM, et al. Shifts in reproductive assurance strategies and inbreeding costs associated with habitat fragmentation in Central American mahogany. Ecol Lett. 2012;15(5):444–452.
   PubMed Web of Science ®Google Scholar