References
- Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF. 2013. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 69:313–319.
- Boore JL. 1999. Animal mitochondrial genomes. Nucleic Acids Res. 27:1767–1780.
- Cong Q, Shen J, Borek D, Robbins RK, Otwinowski Z, Grishin NV. 2016a. Complete genomes of hairstreak butterflies, their speciation, and nucleo-mitochondrial incongruence. Sci Rep. 6:24863.
- Cong Q, Shen J, Warren AD, Borek D, Otwinowski Z, Grishin NV. 2016b. Speciation in cloudless sulphurs gleaned from complete genomes. Genome Biol Evol. 8:915–931. doi:10.1093/gbe/evw045
- Cong Q, Grishin NV. 2016. The complete mitochondrial genome of Lerema accius and its phylogenetic implications. Peer J. 4:e1546.
- Hahn C, Bachmann L, Chevreux B. 2013. Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads – a baiting and iterative mapping approach. Nucleic Acids Research. 41:e129.
- Hao J, Sun Q, Zhao H, Sun X, Gai Y, Yang Q. 2012. The complete mitochondrial genome of Ctenoptilum vasava (Lepidoptera: hesperiidae: pyrginae) and its phylogenetic implication. Compar Func Genomics. 2012:328049.
- Jiang W, Zhu J, Yang Q, Zhao H, Chen M, He H, Yu W. 2016. Complete mitochondrial DNA genome of Polytremis nascens (Lepidoptera: Hesperiidae). Mitochondrial DNA A DNA MappSeq Anal. 27:3131–3132.
- Kelley DR, Schatz MC, Salzberg SL. 2010. Quake: quality-aware detection and correction of sequencing errors. Genome Biol. 11:R116.
- Kim MI, Baek JY, Kim MJ, Jeong HC, Kim KG, Bae CH, Han YS, Jin BR, Kim I. 2009. Complete nucleotide sequence and organization of the mitogenome of the red-spotted apollo butterfly, Parnassius bremeri (Lepidoptera: papilionidae) and comparison with other lepidopteran insects. Mol Cells. 28:347–363.
- Kim MJ, Wang AR, Park JS, Kim I. 2014. Complete mitochondrial genomes of five skippers (Lepidoptera: Hesperiidae) and phylogenetic reconstruction of Lepidoptera. Gene. 549:97–112.
- Marcais G, Kingsford C. 2011. A fast, lock-free approach for efficient parallel counting of occurrences of k-mers. Bioinformatics. 27:764–770.
- Ojala D, Montoya J, Attardi G. 1981. tRNA punctuation model of RNA processing in human mitochondria. Nature. 290:470–474.
- Shao L, Sun Q, Hao J. 2015. The complete mitochondrial genome of Parara guttata (Lepidoptera: Hesperiidae). Mitochondrial DNA. 26:724–725.
- Shen J, Cong Q, Grishin NV. 2015. The complete mitochondrial genome of Papilio glaucus and its phylogenetic implications. Meta Gene. 5:68–83.
- Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics. 22:2688–2690.
- Wang AR, Jeong HC, Han YS, Kim I. 2014. The complete mitochondrial genome of the mountainous duskywing, Erynnis montanus (Lepidoptera: hesperiidae): a new gene arrangement in Lepidoptera. Mitochondrial DNA. 25:93–94.
- Wang J, James John Y, Xuan S, Cao T, Yuan X. 2015. The complete mitochondrial genome of the butterfly Hasora anura (Lepidoptera: hesperiidae). Mitochondrial DNA. 1–2.
- Wang K, Hao J, Zhao H. 2013. Characterization of complete mitochondrial genome of the skipper butterfly, Celaenorrhinus maculosus (Lepidoptera: hesperiidae). Mitochondrial DNA. 26:690–691.
- Warren AD, Ogawa JR, Brower AVZ. 2008. Phylogenetic relationships of subfamilies and circumscription of tribes in the family Hesperiidae (Lepidoptera: hesperioidea). Cladistics. 24:642–676.
- Warren AD, Ogawa JR, Brower AVZ. 2009. Revised classification of the family Hesperiidae (Lepidoptera: hesperioidea) based on combined molecular and morphological data. Syst Entomol. 34:467–523.
- Yuan X, Gao K, Yuan F, Wang P, Zhang Y. 2015. Phylogenetic relationships of subfamilies in the family Hesperiidae (Lepidoptera: hesperioidea) from China. Sci Rep. 5:11140.