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Mito Communication

The female and male mitochondrial genomes of Unio delphinus and the phylogeny of freshwater mussels (Bivalvia: Unionida)

ORCID Icon, ORCID Icon, , & ORCID Icon
Pages 954-957 | Received 30 Aug 2016, Accepted 23 Sep 2016, Published online: 04 Jan 2017

References

  • Altschul S, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389–3402.
  • Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF. 2013. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 69:313–319.
  • Bogan AE, Roe KJ. 2008. Freshwater bivalve (Unioniformes) diversity, systematics, and evolution: status and future directions. J N Am Benthol Soc. 27:349–369.
  • Breton S, Beaupre HD, Stewart DT, Piontkivska H, Karmakar M, Bogan AE, Blier PU, Hoeh WR. 2009. Comparative mitochondrial genomics of freshwater mussels (Bivalvia: Unionoida) with doubly uniparental inheritance of mtDNA: gender-specific open reading frames and putative origins of replication. Genetics. 183:1575–1589.
  • Breton S, Ghiselli F, Passamonti M, Milani L, Stewart DT, Hoeh WR. 2011. Evidence for a fourteenth mtDNA-encoded protein in the female-transmitted mtDNA of marine mussels (Bivalvia: Mytilidae). PLoS One. 6:e19365. doi: 10.1371/journal.pone.0019365.
  • Campbell DC, Lydeard C. 2012. Molecular systematics of Fusconaia (Bivalvia: Unionidae: Ambleminae). Am Malacol Bull. 30:1–17.
  • Cuttelod A, Seddon M, Neubert E. 2011. European Red List of non-marine molluscs. Luxembourg: Publications Office of the European Union.
  • Darriba D, Taboada GL, Doallo R, Posada D. 2011. ProtTest 3: fast selection of best-fit models of protein evolution. Bioinformatics. 27:1164–1165.
  • Darriba D, Taboada GL, Doallo R, Posada D. 2012. jModelTest 2: more models, new heuristics and parallel computing. Nat Methods. 9:772. doi: 10.1038/nmeth.2109.
  • Fonseca MM, Harris DJ, Posada D. 2014. The inversion of the control region in three mitogenomes provides further evidence for an asymmetric model of vertebrate mtDNA replication. PLoS One. 9:e106654. doi: 10.1371/journal.pone.0106654.
  • Froufe E, Gonçalves DV, Teixeira A, Sousa R, Varandas S, Ghamizi M, Zieritz A, Lopes-Lima M 2016a. Who lives where? Molecular and morphometric analyses clarify which Unio species (Unionida, Mollusca) inhabit the southwestern Palearctic. Org Divers Evol. 16:597. doi: 10.1007/s13127-016-0262-x.
  • Froufe E, Gan HM, Lee YP, Carneiro J, Varandas S, Teixeira A, Zieritz A, Sousa R, Lopes-Lima M. 2016b. The male and female complete mitochondrial genome sequences of the endangered freshwater mussel Potomida littoralis (Cuvier, 1798) (Bivalvia: Unionidae). Mitochondrial DNA Part A. 27:3571–3572.
  • Graf DL, Cummings KS 2006. Palaeoheterodont diversity (Mollusca: Trigonioida + Unionoida): what we know and what we wish we knew about freshwater mussel evolution. Zool J Linn Soc. 148:343–394.
  • Huang XC, Rong J, Liu Y, Zhang MH, Wan Y, Ouyang S, Zhou CH, Wu XP. 2013. The complete maternally and paternally inherited mitochondrial genomes of the endangered freshwater mussel Solenaia carinatus (Bivalvia: Unionidae) and implications for Unionidae Taxonomy. PLoS One. 8:e84352. doi: 10.1371/journal.pone.0084352.
  • Lopes-Lima M, Teixeira A, Froufe E, Lopes A, Varandas S, Sousa R. 2014. Biology and conservation of freshwater bivalves: past, present and future perspectives. Hydrobiologia. 735:1–13.
  • Lopes-Lima M, Sousa R, Geist J, Aldridge DC, Araujo R, Bergengren J, Bespalaya Y, Bódis E, Burlakova L, Van Damme D, et al. Forthcoming 2016. Conservation status of freshwater mussels in Europe: state of the art and future challenges. Biol Rev. doi: 10.1111/brv.12244.
  • Penn O, Privman E, Ashkenazy H, Landan G, Graur D, Pupko T. 2010. GUIDANCE: a web server for assessing alignment confidence scores. Nucleic Acids Res. 38:W23–W28.
  • Prié V, Puillandre N. 2014. Molecular phylogeny, taxonomy, and distribution of French Unio species (Bivalvia, Unionidae). Hydrobiologia. 735:95–110.
  • Robinson DF, Foulds LR. 1981. Comparison of phylogenetic trees. Math Biosci. 53:131–147.
  • Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP, et al. 2012. MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 61:539–542.
  • Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30:1312–1313.
  • Whelan NV, Geneva AJ, Graf DL. 2011. Molecular phylogenetic analysis of tropical freshwater mussels (Mollusca: Bivalvia: Unionoida) resolves the position of Coelatura and supports a monophyletic Unionidae. Mol Phylogenet Evol. 61:504–514.
  • Zouros E, Oberhauser Ball A, Saavedra C, Freeman KR. 1994. An unusual type of mitochondrial DNA inheritance in the blue mussel Mytilus. Proc Natl Acad Sci USA. 91:7463–7467.