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Mitochondrial DNA Part B
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Volume 1, 2016 - Issue 1
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Mitogenome Announcement

The complete mitochondrial genome of the parthenogenetic Caucasian rock lizard Darevskia unisexualis (Squamata: lacertidae) contains long tandem repeat formed by 59 bp monomer

Aleksey KomissarovTheodosius Dobzhansky Center for Genome Bioinformatics Saint Petersburg State University, St. Petersburg, Russia; Correspondence[email protected]
,
Vitaly KorchaginLaboratory of Genome Organization, Institute of Gene Biology of the Russian Academy of Sciences, Moscow, Russia
,
Sergei KliverTheodosius Dobzhansky Center for Genome Bioinformatics Saint Petersburg State University, St. Petersburg, Russia;
,
Pavel DobryninTheodosius Dobzhansky Center for Genome Bioinformatics Saint Petersburg State University, St. Petersburg, Russia;
,
Serafima SemyenovaLaboratory of Genome Organization, Institute of Gene Biology of the Russian Academy of Sciences, Moscow, Russia
,
Andrey VergunLaboratory of Genome Organization, Institute of Gene Biology of the Russian Academy of Sciences, Moscow, RussiaORCID Iconhttp://orcid.org/0000-0001-5255-7802
ORCID Icon,
Stephen O’BrienTheodosius Dobzhansky Center for Genome Bioinformatics Saint Petersburg State University, St. Petersburg, Russia;
&
Alexey RyskovLaboratory of Genome Organization, Institute of Gene Biology of the Russian Academy of Sciences, Moscow, Russia
 show all
Pages 875-877 | Received 22 Sep 2016, Accepted 23 Oct 2016, Published online: 09 Dec 2016

References

  • Amer SA, Kumazawa Y. 2005. Mitochondrial genome of Pogona vitticepes (Reptilia; Agamidae): control region duplication and the origin of Australasian agamids. Gene. 346:249–256.
  • Amer SA, Kumazawa Y. 2007. The mitochondrial genome of the lizard Calotes versicolor and a novel gene inversion in South Asian draconine agamids. Mol Biol Evol. 24:1330–1339.
  • Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF. 2013. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 69:313–319.
  • Brandt AL, Grigorev K, Afanador-Hernández YM, Paulino LA, Murphy WJ, Núñez A, Komissarov A, Brandt JR, Dobrynin P, Hernández-Martich JD, María R. 2016. Mitogenomic sequences support a north–south subspecies subdivision within Solenodon paradoxus. Mitochondrial DNA Part A. 14:1–9.
  • Chaisson MJ, Tesler G. 2012. Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory. BMC Bioinform. 13:238.
  • Darevsky IS, Kupriyanova LA, Uzzell T. 1985. Parthenogenesis in reptiles. In: Gans C, Billett DF, editors. Biology of Reptilia. vol. 15. New York: John Wiley & Sons; p. 413–526.
  • Dong S, Kumazawa Y. 2005. Complete mitochondrial DNA sequences of six snakes: phylogenetic relationships and molecular evolution of genomic features. J Mol Evol. 61:12–22.
  • Fujita MK, Boore JL, Moritz C. 2007. Multiple origins and rapid evolution of duplicated mitochondrial genes in parthenogenetic geckos (Heteronotia binoei; Squamata, Gekkonidae). Mol Biol Evol. 24:2775–2786.
  • Fujita MK, Moritz C. 2010. Origin and evolution of parthenogenetic genomes in lizards: current state and future directions. Cytogenet Genome Res. 127:261–272.
  • Huerta-Cepas J, Dopazo J, Gabaldón T. 2010. ETE: a python environment for tree exploration. BMC Bioinform. 11:1.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30:772–780.
  • Kumazawa Y, Miura S, Yamada C, Hashiguchi Y. 2014. Gene rearrangements in gekkonid mitochondrial genomes with shuffling, loss, and reassignment of tRNA genes. BMC Genom. 15:1.
  • Langmead B, Salzberg SL. 2012. Fast gapped-read alignment with Bowtie 2. Nat Methods. 9:357–359.
  • Moritz C, Uzzell T, Spolsky C, Hotz H, Darevsky I, Kupriyanova L, Danielyan F. 1992. The material ancestry and approximate age of parthenogenetic species of Caucasian rock lizards (Lacerta: Lacertidae). Genetica. 87:53–62.
  • Murphy RW, Fu J, Macculloch RD, Darevsky IS, Kupriyanova LA. 2000. A fine line between sex and unisexuality: the phylogenetic constraints on parthenogenesis in lacertid lizards. Zool J Linn Soc. 130:527–549.
  • Podnar M, Pinsker W, Mayer W. 2009. Complete mitochondrial genomes of three lizard species and the systematic position of the Lacertidae (Squamata). J Zool Syst Evol Res. 47:35–41.
  • Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30:1312–1313.
  • Starostina E, Tamazian G, Dobrynin P, O’Brien SJ, Komissarov A. 2015. Cookiecutter: a tool for kmer-based read filtering and extraction. bioRxiv. Available from: http://dx.doi.org/10.1101/024679.

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