References
- Botero-Castro F, Delsuc F, Douzery EJP. 2014. Thrice better than once: quality control guidelines to validate new mitogenomes. Mitochondrial DNA. 1736:1–6.
- Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 17:540–552.
- Darriba D, Taboada GL, Doallo R, Posada D. 2012. jModelTest 2: more models, new heuristics and parallel computing. Nature Med. 9:772.
- Huelsenbeck JP, Ronquist F. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics (Oxford, England). 17:754–755.
- Jebb D, Foley NM, Puechmaille SJ, Teeling EC. 2015. The complete mitochondrial genome of the Greater Mouse-Eared bat, Myotis myotis (Chiroptera: Vespertilionidae). Mitochondrial DNA. 1736:1–3.
- Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30:772–780.
- Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, et al. 2012. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics (Oxford, England). 28:1647–1649.
- Kerth G, van Schaik J. 2012. Causes and consequences of living in closed societies: lessons from a long-term socio-genetic study on Bechstein?s bats. Mol Ecol. 21:633–646.
- Laslett D, Canbäck B. 2008. ARWEN: a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences. Bioinformatics (Oxford, England). 24:172–175.
- Ruedi M, Stadelmann B, Gager Y, Douzery EJP, Francis CM, Lin L-K, Guillén-Servent A, Cibois A. 2013. Molecular phylogenetic reconstructions identify East Asia as the cradle for the evolution of the cosmopolitan genus Myotis (Mammalia, Chiroptera). Mol Biol Evol. 69:437–449.
- Simpson JT, Wong K, Jackman SD, Schein JE, Jones SJM, Birol I. 2009. ABySS: a parallel assembler for short read sequence data. Genome Res. 19:1117–1123.
- Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics (Oxford, England). 22:2688–2690.