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Mito Communication

Mitochondrial genomes and phylogenetic relationships of Lates japonicus, Lates niloticus, and Psammoperca waigiensis (Perciformes: Latidae)

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Pages 73-75 | Received 28 Nov 2016, Accepted 18 Jan 2017, Published online: 06 Feb 2017

References

  • Abascal F, Zardoya R, Telford MJ. 2010. TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations. Nucleic Acids Res. 38:W7–13.
  • Eschmeyer WN, Fricke R, Van Der Laan R. 2016. Catalog of fishes: Genera, Species, References [Internet]. [cited 2016 Nov 17]. Available from: http://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatmain.asp
  • Froese R, Pauly D. 2016. FishBase (version Aug 2016). In: Roskov Y, Abucay L, Orrell TM, Nicolson D, Flann C, Bailly N, Kirk P, Bourgoin T, Dewalt RE, DECOCK W, de Wever A, editors. Species 2000 & ITIS catalogue of life. Naturalis, Leiden, the Netherlands: Species 2000.
  • Gan HM, Schultz MB, Austin CM. 2014. Integrated shotgun sequencing and bioinformatics pipeline allows ultra-fast mitogenome recovery and confirms substantial gene rearrangements in Australian freshwater crayfishes. BMC Evol Biol. 14:19.
  • Hahn C, Bachmann L, Chevreux B. 2013. Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads–a baiting and iterative mapping approach. Nucleic Acids Res. 41:e129.
  • Harrington RC, Faircloth BC, Eytan RI, Smith WL, Near TJ, Alfaro ME, Friedman M. 2016. Phylogenomic analysis of carangimorph fishes reveals flatfish asymmetry arose in a blink of the evolutionary eye. BMC Evol Biol. 16:224.
  • Iwasaki W, Fukunaga T, Isagozawa R, Yamada K, Maeda Y, Satoh TP, Sado T, Mabuchi K, Takeshima H, Miya M, Nishida M. 2013. MitoFish and MitoAnnotator: a mitochondrial genome database of fish with an accurate and automatic annotation pipeline. Mol Biol Evol. 30:2531–2540.
  • Katayama M, Yasuhiko T. 1984. Lates japonicus, a New Centropomid Fish from Japan. JpnJ Ichthyol. 30:361–367.
  • Katoh K, Standley DM. 2014. MAFFT: iterative refinement and additional methods. Methods Mol Biol. 1079:131–146.
  • Lin G, Lo LC, Zhu ZY, Feng F, Chou R, Yue GH. 2006. The complete mitochondrial genome sequence and characterization of single-nucleotide polymorphisms in the control region of the Asian seabass (Lates calcarifer). Mar Biotechnol (NY). 8:71–79.
  • Masuda H, Amaoka K, Araga C, Uyeno T. 1984. The fishes of the Japanese Archipelago. Tokyo, Japan: Tokai University Press.
  • Nelson JS, Grande TC, Wilson MVH. 2016. Fishes of the world. 5th ed. Hoboken (NY): John Wiley & Sons.
  • Nguyen LT, Schmidt HA, Von Haeseler A, Minh BQ. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 32:268–274.
  • Pringle RM. 2005. The Origins of the Nile Perch in Lake Victoria. BioScience. 55:780–787.
  • Randall JE, Allen GR, Steene RC. 1990. Fishes of the Great Barrier Reef and Coral Sea. Honolulu, Hawaii: University of Hawaii Press.
  • Takahashi H, Takeshita N, Tanoue H, Ueda S, Takeshima H, Komatsu T, Kinoshita I, Nishida M. 2015. Severely depleted genetic diversity and population structure of a large predatory marine fish (Lates japonicus) endemic to Japan. Conserv Genet. 16:1155–1165.
  • Vij S, Purushothaman K, Gopikrishna G, Lau D, Saju JM, Shamsudheen KV, Kumar KV, Basheer VS, Gopalakrishnan A, Hossain MS, et al. 2014. Barcoding of Asian seabass across its geographic range provides evidence for its bifurcation into two distinct species. Front Mar Sci. [Internet]. Available from: http://journal.frontiersin.org/article/10.3389/fmars.2014.00030/full