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Mitogenome Announcement

The complete mitochondrial genome and phylogenetic placement of Apis nigrocincta Smith (Insecta: Hymenoptera: Apidae), an Asian, cavity-nesting honey bee

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Pages 249-250 | Received 31 Mar 2017, Accepted 10 Apr 2017, Published online: 25 Apr 2017

References

  • Arias MC, Sheppard WS. 2005. Phylogenetic relationships of honey bees (Hymenoptera: Apinae: Apini) inferred from nuclear and mitochondrial DNA sequence data. Mol Phylogenet Evol. 37:22–35.
  • Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 19:455–477.
  • Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina Sequence Data. Bioinformatics. 30:2114–2120.
  • Damus MS, Otis GW. 1997. A morphometric analysis of Apis cerana F. and Apis nigrocincta Smith populations from southeast Asia. Apidologie. 28:309–323.
  • Deatherage DE, Barrick JE. 2014. Identification of mutations in laboratory-evolved microbes from next-generation sequencing data using breseq. Methods Mol Biol. 1151:165–188.
  • Eimanifar A, Kimball RT, Braun EL, Ellis JD. 2016. The complete mitochondrial genome of the Cape honey bee, Apis mellifera capensis Esch. (Insecta: hymenoptera: apidae). Mitochondrial DNA Part B. 1:817–819.
  • Hadisoesilo S, Otis GW. 1996. Drone flight times confirm the species status of Apis nigrocincta Smith, 1861 to be a species distinct from Apis cerana F, 1793, in Sulawesi, Indonesia. Apidologie. 27:361–369.
  • Hepburn HR, Radloff SE, editors. 2011. Honeybees of Asia. Heidelberg, Dordrecht, London, New York: Springer.
  • Langmead B, Salzberg S. 2012. Fast gapped-read alignment with Bowtie 2. Nature Methods. 9:357–359.
  • Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25:955–964.
  • Raffiudin R, Crozier RH. 2007. Phylogenetic analysis of honey bee behavioral evolution. Mol Phylogenet Evol. 43:543–552.
  • Stamatakis A. 2006. RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics. 22:2688–2690.