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Mitochondrial DNA Part B
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Volume 2, 2017 - Issue 1
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Mitogenome Announcement

Next-generation sequencing yields the complete mitochondrial genome of the Shangrila hot-spring snakes (Thermophis shangrila; Reptilia: Colubridae)

Wei WuEngineering Laboratory of Prevention and Control of Veterinary Drug Residues in Animal Derived Food, Chengdu Medical College, Chengdu, China; ;Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, ChinaView further author information
,
De-Chun JiangChengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, ChinaView further author information
&
Feng-Hui SunEngineering Laboratory of Prevention and Control of Veterinary Drug Residues in Animal Derived Food, Chengdu Medical College, Chengdu, China; Correspondence[email protected]
View further author information
Pages 327-328 | Received 25 Apr 2017, Accepted 13 May 2017, Published online: 30 May 2017

References

  • Alex F, Mckelvy AD, Lee GL, Bell CD, Lailvaux SP. 2016. A species-level phylogeny of extant snakes with description of a new colubrid subfamily and genus. PLoS One. 11:1–31.
  • Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF. 2013. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 69:313–319.
  • Hahn C, Bachmann L, Chevreux B. 2013. Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads-a baiting and iterative mapping approach. Nucl Acids Res. 41:e129.
  • He M, Feng JC, Zhao EM. 2010. The complete mitochondrial genome of the Sichuan hot-spring keel-back (Thermophis zhaoermii; Serpentes: Colubridae) and a mitogenomic phylogeny of the snakes. Mitochondrial DNA. 21:8–18.
  • Huang S, Liu SY, Guo P, Zhang YP, Zhao EM. 2009. What are the closest relatives of the hot-spring snakes (Colubridae, Thermophis), the relict species endemic to the Tibetan Plateau? Mol Phylogenet Evol. 51:438–446.
  • Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucl Acids Res. 25:955–964.
  • Paszkiewicz K, Studholme DJ. 2010. De novo assembly of short sequence reads. Brief Bioinformat. 11:457–472.
  • Peng L, Changhu LU, Huang S, Guo P, Zhang Y. 2014. A new species of the genus Thermophis (Serpentes: Colubridae) from Shangri-La, Northern Yunnan, China, with a proposal for an eclectic rule for species delimitation. Asian Herpetol Res. 5:228–239.
  • Peng LF, Weng SY, Yang DC, Lu CH, Huang S. 2016. Complete mitochondrial genome of the Xianggelila Hot-spring snake, Thermophis shangrila (Reptilia, Colubridae). Mitochondrial DNA Part B Resources. 1:536–537.
  • Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics. 22:2688–2690.
  • Sun X, Liu S, Huang S. 2011. Tibetan plateau relict snakes of the genus Thermophis and their relationship to new world relict snakes. Asian Herpetol Res. 2:161–168.
  • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2001. MEGA5:molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 28:2731–2739.

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