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Mitochondrial DNA Part B
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Volume 2, 2017 - Issue 1
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Mitogenome Announcement

Complete mitochondrial genome and the phylogenetic position of the Lake Eyre hardyhead (Craterocephalus eyresii), a freshwater atherinid fish endemic to Lake Eyre Basin, South Australia

Davin H. E. SetiamargaDepartment of Applied Chemistry and Biochemistry, National Institute of Technology, Wakayama College, Gobo City, Wakayama, Japan; ;The University Museum, The University of Tokyo, Tokyo, JapanCorrespondence[email protected]
Pages 315-317 | Received 20 May 2017, Accepted 21 May 2017, Published online: 28 May 2017

References

  • Allen GR, Midgley SH, Allen M. 2002. Field guide to the freshwater fishes of Australia. Perth, Western Australia: Western Australian Museum.
  • Betancur RR, Broughton RE, Wiley EO, Carpenter K, López JA, Li C, Holcroft NI, Arcila D, Sanciangco M, Cureton Ii JC, et al. 2013. The tree of life and a new classification of bony fishes. PLoS Curr. 5:pii.
  • Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 17:540–552.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30:772–780.
  • Kawahara R, Miya M, Mabuchi K, Lavoué S, Inoue JG, Satoh TP, Kawaguchi A, Nishida M. 2008. Interrelationships of the 11 gasterosteiform families (sticklebacks, pipefishes, and their relatives): a new perspective based on whole mitogenome sequences from 75 higher teleosts. Mol Phylogenet Evol. 46:224–236.
  • Lanfear R, Frandsen PB, Wright AM, Senfeld T, Calcott B. 2017. PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses. Mol Biol Evol. 34:772–773.
  • Miya M, Nishida M. 1999. Organization of the Mitochondrial Genome of a Deep-Sea Fish, Gonostoma gracile (Teleostei: Stomiiformes): First Example of Transfer RNA Gene Rearrangements in Bony Fishes. Mar Biotechnol. 1:416–426.
  • Setiamarga DH, Miya M, Yamanoue Y, Mabuchi K, Satoh TP, Inoue JG, Nishida M. 2008. Interrelationships of Atherinomorpha (medakas, flyingfishes, killifishes, silversides, and their relatives): The first evidence based on whole mitogenome sequences. Mol Phylogenet Evol. 49:598–605.
  • Setiamarga DH, Miya M, Yamanoue Y, Azuma Y, Inoue JG, Ishiguro NB, Mabuchi K, Nishida M. 2009. Divergence time of the two regional medaka populations in Japan as a new time scale for comparative genomics of vertebrates. Biol Lett. 5:812–816.
  • Silvestro D, Michalak I. 2012. raxmlGUI: a graphical front-end for RAxML. Org Divers Evol. 12:335.
  • Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30:1312–1313.
  • Unmack PJ, Dowling TE. 2010. Biogeography of the genus Craterocephalus (Teleostei: Atherinidae) in Australia. Mol Phylogenet Evol. 55:968–984.
  • Yang Z. 1994. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J Mol Evol. 39:306–314.

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