841
Views
6
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

The mitochondrial genome of Atrocalopteryx melli Ris, 1912 (Zygoptera: Calopterygidae) via Ion Torrent PGM NGS sequencing

, , , , , & show all
Pages 115-117 | Received 17 Nov 2017, Accepted 01 Dec 2017, Published online: 11 Jan 2018

References

  • Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J Mol Biol. 215:403–410.
  • Bernt M, Donath A, Juehling F, Externbrink F, Florentz C, Fritzsch G, Puetz J, Middendorf M, Stadler PF. 2013. MITOS: Improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 69:313–319.
  • Dumont HJ, Vanfleteren JR, De Jonckheere JF, Ph HW. 2005. Phylogenetic relationships, divergence time estimation, and global biogeographic patterns of calopterygoid damselflies (Odonata, Zygoptera) inferred from ribosomal DNA sequences. Syst Biol. 54:347–362.
  • Dumont HJ, Vierstraete A, Vanfleteren JR. 2007. A revised molecular phylogeny of the Calopteryginae (Zygoptera: Calopterygidae). Odonatologica. 36:365–372.
  • Feindt W, Herzog R, Osigus HJ, Schierwater B, Hadrys H. 2016. Short read sequencing assembly revealed the complete mitochondrial genome of Ischnura elegans Vander Linden, 1820 (Odonata: Zygoptera). Mitochondrial DNA B Resour. 1:574–576.
  • Feindt W, Osigus HJ, Herzog R, Mason CE, Hadrys H. 2016. The complete mitochondrial genome of the neotropical helicopter damselfly Megaloprepus caerulatus (Odonata: Zygoptera) assembled from next generation sequencing data. Mitochondrial DNA B Resour. 1:497–499.
  • Graybeal A. 1998. Is it better to add taxa or characters to a difficult phylogenetic problem? Syst Biol. 47:9–17.
  • Guan Z, Han BP, Vierstraete A, Dumont HJ. 2012. Additions and refinements to the molecular phylogeny of the Calopteryginae S.L. (Zygoptera: Calopterygidae). Odonatologica. 41:17–24.
  • Hadrys H, Balick M, Schierwater B. 1992. Applications of random amplified polymorphic DNA (RAPD) in molecular ecology. Mol Ecol. 1:55–63.
  • Hahn C, Bachmann L, Chevreux B. 2013. Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads-a baiting and iterative mapping approach. Nucleic Acids Res. 41:e129.
  • Herzog R, Osigus HJ, Feindt W, Schierwater B, Hadrys H. 2016. The complete mitochondrial genome of the emperor dragonfly Anax imperator Leach, 1815 (Odonata: Aeshnidae) via NGS sequencing. Mitochondrial DNA B Resour. 1:783–786.
  • Jiang H, Lei R, Ding S-W, Zhu S. 2014. Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads. BMC Bioinformatics. 15:182.
  • Laslett D, Canback B. 2008. ARWEN: a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences. Bioinformatics. 24:172–175.
  • Lee EM, Hong MY, Kim MI, Kim MJ, Park HC, Kim KY, Lee IH, Bae CH, Jin BR, Kim I. 2009. The complete mitogenome sequences of the palaeopteran insects Ephemera orientalis (Ephemeroptera: Ephemeridae) and Davidius lunatus (Odonata: Gomphidae). Genome. 52:810–817.
  • Lin CP, Chen MY, Huang JP. 2010. The complete mitochondrial genome and phylogenomics of a damselfly, Euphaea formosa support a basal Odonata within the Pterygota. Gene. 468:20–29.
  • Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25:955–964.
  • Philippe H, Brinkmann H, Lavrov DV, Littlewood DTJ, Manuel M, Wörheide G, Baurain D. 2011. Resolving difficult phylogenetic questions: Why more sequences are not enough? PLoS Biol. 9:e1000602.
  • Ris F. 1912. Neue Libellen von Formosa, Sudchina, Tonkin und den Philippinen. Supplementa Entomologica. 1:44–85.
  • Schreeg ME, Marr HS, Tarigo JL, Cohn LA, Bird DM, Scholl EH, Levy MG, Wiegmann BM, Birkenheuer AJ. 2016. Mitochondrial genome sequences and structures aid in the resolution of Piroplasmida phylogeny. PLos One. 11:e0165702
  • Swindell SR, Plasterer TN. 1997. Sequence Data Analysis Guidebook. In: Swindell SR, editor. Totowa (NJ): Springer; p. 75–89.
  • Yong HS, Song SL, Suana IW, Eamsobhana P, Lim PE. 2016. Complete mitochondrial genome of Orthetrum dragonflies and molecular phylogeny of Odonata. Biochem Syst Ecol. 69:124–131.