The complete mitochondrial genome of the cowpea weevil, Callosobruchus maculates (Coleoptera: Chrysomelidae: Bruchinae) and a related phylogenetic analysis of Chrysomelidae

References

• Akami M, Niu C, Chakira H, Chen Z, Vi T, Nukenine EN. 2016. Persistence and comparative pesticidal potentials of some constituents of Lippia adoensis (Hochst. ex Walp.) (Lamiales: Verbenaceae) essential oil against three life stages of Callosobruchus maculatus (Fab.) (Coleoptera: Bruchidae). Brit Biotech J. 13:1–16.
   Google Scholar
• Bininda-Emonds O. 2005. TransAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences. BMC Bioinf. 6:156.
   PubMed Web of Science ®Google Scholar
• Bocak L, Barton C, Crampton-Platt A, Chesters D, Ahrens D, Vogler AP. 2014. Building the Coleoptera tree-of-life for >8000 species: composition of public DNA data and fit with Linnaean classification. Syst Entomol. 39:97–110.
   Web of Science ®Google Scholar
• Bouchard P, Bousquet Y, Davies AE, Alonso-Zarazaga MA, Lawrence JF, Lyal CHC, Newton AF, Reid CAM, Schmitt M, Ślipiñski SA, et al. 2011. Family-group names in Coleoptera (Insecta). ZooKeys. 88:1–972.
   PubMed Web of Science ®Google Scholar
• Brisibe EA, Adugbo SE, Ekanem U, Brisibe F, Figueira GM. 2011. Controlling bruchid pests of stored cowpea seeds with dried leaves of Artemisia annua and two other common botanicals. Afr J Biotechnol. 10:9586–9592.
   Google Scholar
• Crampton-Platt A, Timmermans MJ, Gimmel ML, Kutty SN, Cockerill TD, Khen CV, Vogler AP. 2015. Soup to tree: the phylogeny of beetles inferred by mitochondrial metagenomics of a Bornean rainforest sample. Mol Biol Evol. 32:2302–2316.
   PubMed Web of Science ®Google Scholar
• Crowson RA. 1955. The natural classification of the families of Coleoptera. London: Nathaniel Lloyd.
   Google Scholar
• Duckett CN. 1997. The scientific method and the predictive value of classification. Chrysomela. 34:3–4.
   Google Scholar
• Farrell BD, Sequeira AS. 2004. Evolutionary rates in the adaptive radiation of beetles on plants. Evolution. 58:1984–2001.
   PubMed Web of Science ®Google Scholar
• Gomez-Rodriguez C, Crampton-Platt A, Timmermans MJ, Baselga A, Vogler AP. 2015. Validating the power of mitochondrial metagenomics for community ecology and phylogenetics of complex assemblages. Meth Ecol Evol. 6:883–894.
   Web of Science ®Google Scholar
• Gómez-Zurita J, Hunt T, Vogler AP. 2008. Multilocus ribosomal RNA phylogeny of the leaf beetles (Chrysomelidae). Cladistics. 24:34–50.
   Web of Science ®Google Scholar
• Haddad S, Mckenna DD. 2016. Phylogeny and evolution of the superfamily Chrysomelidae (Coleoptera: Cucujiformia). Syst Entomol. 41:697–716.
   Web of Science ®Google Scholar
• Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, et al. 2012. Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 28:1647–1649.
   PubMed Web of Science ®Google Scholar
• Kingsolver JM. 1996. On the family Bruchidae. Chrysomela. 30:3.
   Google Scholar
• Lingafelter S, Pakaluk J. 1997. Comments on the bruchine Chrysomelidae. Chrysomela. 33:3.
   Google Scholar
• Nie RE, Breeschoten T, Timmermans MJTN, Nadein K, Xue HJ, Bai M, Huang Y, Yang XK, Vogler AP. 2017. The phylogeny of Galerucinae (Coleoptera: Chrysomelidae) and the performance of mitochondrial genomes in phylogenetic inference compared to nuclear rRNA genes. Cladistics. 33:1–18.
   PubMedGoogle Scholar
• Ofuya TL, Osadahun JM. 2005. Effect of three plant powders on behaviour, mortality and reproductive fitness of Callosobruchus maculatus (Fabricius) (Coleoptera: Bruchidae). Zool Sci. 26:603–608.
   Google Scholar
• Reid CAM. 1995. A cladistic analysis of subfamilial relationships in the Chrysomelidae sensu lato (Chrysomeloidea). In: Pakaluk J, Slipinski SA, editors. Biology, phylogeny, and classification of Coleoptera: papers celebrating the 80th birthday of Roy A. Crowson. Vol. 2. Warszawa: Muzeum i Instytut Zoologii PAN; p. 559–631.
   Google Scholar
• Reid CAM. 1996. More on the family Bruchidae. Chrysomela. 31:3.
   Google Scholar
• Reid CAM. 2000. Spilopyrinae Chapuis: a new subfamily in the Chrysomelidae and its systematic placement (Coleoptera). Invertebr Taxon. 14:837–862.
   Google Scholar
• Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 61:539–542.
   PubMed Web of Science ®Google Scholar
• Schattner P, Brooks AN, Lowe TM. 2005. The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucleic Acids Res. 33:686–689.
   PubMed Web of Science ®Google Scholar
• Timmermans MJTN, Barton C, Haran J, Ahrens D, Culverwell CL, Ollikainen A, Dodsworth S, Foster PG, Bocak L, Vogler AP. 2016. Family-level sampling of mitochondrial genomes in Coleoptera: compositional heterogeneity and phylogenetics. Genome Biol Evol. 8:161–175.
   Web of Science ®Google Scholar
• Timmermans MJTN, Dodsworth S, Culverwell C, Bocak L, Ahrens D, Littlewood D, Pons J, Vogler AP. 2010. Why barcode? High-throughput multiplex sequencing of mitochondrial genomes for molecular systematics. Nucleic Acids Res. 38:e197.
   PubMed Web of Science ®Google Scholar
• Tran BMD, Credland PF. 1995. Consequences of inbreeding for the cowpea seed beetle, Callosobruchus maculates (F.) (Coleoptera: Bruchidae). Biol J Linn Soc. 56:483–503.
   Web of Science ®Google Scholar
• Vaidya G, Lohman DJ, Meier R. 2011. SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information. Cladistics. 27:171–180.
   PubMed Web of Science ®Google Scholar
• Verma KK, Saxena R. 1996. The status of Bruchidae as a family. Chrysomela. 32:3.
   Google Scholar
• Verma KK. 1998. More on the bruchid controversy. Chrysomela. 35:3.
   Google Scholar
• Xie YL, Wu GX, Tang JB, Luo R, Patterson J, Liu S, Huang W, He G, Gu S, Li S, et al. 2014. SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads. Bioinformatics. 30:1660–1666.
   PubMed Web of Science ®Google Scholar
• Zhou X, Li YY, Liu SL, Yang Q, Su X, Zhou LL, Tang M, Fu RB, Li JG, Huang QF. 2013. Ultra-deep sequencing enables high-fidelity recovery of biodiversity for bulk arthropod samples without PCR amplification. Gigascience. 2:4.
   PubMed Web of Science ®Google Scholar