Advanced search
Publication Cover
Mitochondrial DNA Part B
Resources
Volume 3, 2018 - Issue 1
Submit an article Journal homepage
1,046
Views
3
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

The complete chloroplast genome sequence of Camellias (Camellia fangchengensis)

Yuan LiuPlant Germplasm and Genomics Center, Germplasm Bank of Wild Species in Southwest China, Kunming Institute of Botany, The Chinese Academy of Sciences, Kunming, China; ;Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, ChinaCorrespondence[email protected]
View further author information
&
Yan HanFaculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, ChinaView further author information
Pages 34-35 | Received 15 Nov 2017, Accepted 15 Dec 2017, Published online: 21 Dec 2017

References

  • Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30:2114–2120.
  • Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. 19:11–15.
  • Huang H, Shi C, Liu Y, Mao SY, Gao LZ. 2014. Thirteen Camellia chloroplast genome sequences determined by high-throughput sequencing: genome structure and phylogenetic relationships. BMC Evol Biol. 14:151–151.
  • Kane N, Sveinsson S, Dempewolf H, Yang JY, Zhang D, Engels JM, Cronk Q. 2012. Ultra-barcoding in cacao (Theobroma spp.; Malvaceae) using whole chloroplast genomes and nuclear ribosomal DNA. Am J Bot. 99:320–329.
  • Luo R, Liu B, Xie Y. 2012. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. Gigascience. 1:18.
  • Li K. 2003. ClustalW-MPI: ClustalW analysis using distributed and parallel computing. Bioinformatics. 19:1585–1586.
  • Lohse M, Drechsel O, Kahlau S, Bock R. 2013. OrganellarGenomeDRAW-a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets. Nucleic Acids Res. 41:575–581.
  • Nadalin F, Vezzi F, Policriti A. 2012. Gapfiller: a de novo assembly approach to fill the gap within paired reads. BMC Bioinformatics. 13 Suppl 14:): S8.
  • Kumar S, Stecher G, Tamura K. 2016. MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets. Mol Biol Evol. 33:1870–1874.
  • Ruhfel BR, Gitzendanner MA, Soltis PS, Soltis DE, Burleigh JG. 2014. From algae to angiosperms – inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes. BMC Evol Biol. 14:1–27.
  • Shi C, Liu Y, Huang H, Xia EH, Zhang HB, Gao LZ. 2013. Contradiction between plastid gene transcription and function due to complex posttranscriptional splicing: an exemplary study of ycf15 function and evolution in angiosperms. Plos One. 8:e59620.
  • Wyman SK, Jansen RK, Boore JL. 2004. Automatic annotation of organellar genomes with DOGMA. Bioinformatics. 20:3252–3255.
  • Yang JB, Yang SX, Li HT, Yang J, Li DZ. 2013. Comparative chloroplast genomes of Camellia species. Plos One. 8:e73053.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.