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Mitochondrial DNA Part B
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Volume 3, 2018 - Issue 1
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Mitogenome Announcement

Using ezRAD to reconstruct the complete mitochondrial genome of Porites fontanesii (Cnidaria: Scleractinia)

Tullia I. TerraneoRed Sea Research Center, Division of Biological and Environmental Science and Engineering, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia; ;ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, QLD, Australia; Correspondence[email protected]
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,
Roberto ArrigoniRed Sea Research Center, Division of Biological and Environmental Science and Engineering, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia; View further author information
,
Francesca BenzoniDepartment of Biotechnologies and Bioscience, University of Milano-Bicocca, Milan, Italy; View further author information
,
Zac H. ForsmanHawaii Institute of Marine Biology, Kaneohe, HI, USAView further author information
&
Michael L. BerumenRed Sea Research Center, Division of Biological and Environmental Science and Engineering, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia; View further author information
Pages 173-174 | Received 12 Jan 2018, Accepted 01 Feb 2018, Published online: 09 Feb 2018

References

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  • Benzoni F, Stefani F. 2012. Porites fontanesii, a new species of hard coral (Scleractinia, Poritiidae) from the southern Red Sea, the Gulf of Tadjoura, and the Gulf of Aden and its phylogenetic relationshios within the genus. Zootaxa. 3447:56–68.
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  • Forsman ZH, Barshis DJ, Hunter CL, Toonen RJ. 2009. Shape-shifting corals: molecular markers show morphology is evolutionarily plastic in Porites. BMC Evol Biol. 9:45.
  • Fukami H, Knowlton N. 2005. Analysis of complete mitochondrial DNA sequences of three members of the Montastraea annularis coral species complex (Cnidaria, Anthozoa, Scleractinia). Coral Reefs. 24:410–417.
  • Guindon S, Gascuel O, Rannala B. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by Maximum Likelihood. Syst Biol. 52:696–704.
  • Hellberg ME, Prada C, Tan MH, Forsman ZH, Baums IB. 2016. Getting a grip at the edge: recolonization and introgression in eastern Pacific Porites corals. J Biogeogr. 43:2147–2159.
  • Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics. 19:1572–1574.
  • Schattner P, Brooks AN, Lowe TM. 2005. The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucleic Acids Res. 33:W686–W689.
  • Toonen RJ, Puritz JB, Forsman ZH, Whitney JL, Fernandez-Silva I, Andrews KR, Bird CE. 2013. ezRAD: a simplified method for genomic genotyping in non-model organisms. PeerJ. 1:e203.
  • Wyman SK, Jansen RK, Boore JL. 2004. Automatic annotation of organellar genomes with DOGMA. Bioinformatics. 20:3252–3255.

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