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Mitogenome Announcement

Mitochondrial genome of an Allegheny Woodrat (Neotoma magister)

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Pages 256-258 | Received 13 Jan 2018, Accepted 18 Jan 2018, Published online: 22 Feb 2018

References

  • Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF. 2013. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 69:313–319.
  • Bolger A, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30:2114–2120.
  • Brown SK, Blois JL. 2016. The complete mitochondrial genome of the dusky-footed woodrat (Neotoma fuscipes) (Rodentia, Cricetidae). Mitochondrial DNA. 1:728–729.
  • Castleberry SB, King TL, Wood PB, Ford WM. 2000. Microsatellite DNA markers for the study of Allegheny woodrat (Neotoma magister) populations and cross-species amplification in the genus Neotoma. Mol Ecol. 9:824–826.
  • Castleberry SB, King TL, Wood PB, Ford WM. 2002. DNA analysis of population structure in Allegheny woodrats (Neotoma magister). J Mammal. 83:1058–1070.
  • Chevreux B, Wetter T, Suhai S. 1999. Genome sequence assembly using trace signals and additional sequence information. Computer Science and Biology: Proceedings of the German Conference on Bioinformatics, Vol. 99:45–56.
  • Hahn C, Bachmann L, Chevreux B. 2013. Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads – a baiting and iterative mapping approach. Nucleic Acids Res. 41:e129–e129.
  • LoGiudice K. 2008. Multiple causes of the Allegheny woodrat decline: a historical–ecological examination. New York (NY): Springer.
  • Matocq MD, Shurtliff QR, Feldman CR. 2007. Phylogenetics of the woodrat genus Neotoma (Rodentia: Muridae): Implications for the evolution of phenotypic variation in male external genitalia. Mol Phylogenet Evol. 42:637–652.
  • Smyser TJ, Johnson SA, Page LK, Rhodes OE Jr. 2012. Synergistic stressors and the dilemma of conservation in a multivariate world: a case study in Allegheny woodrats. Animal Conservation. 15:205–213.
  • Sullivan KAM, Platt RN, Bradley RD, Ray DA. 2017. Whole mitochondrial genomes provide increased resolution and indicate paraphyly in deer mice. BMC Zool. 2:11.
  • Reeder SA, Carroll DS, Edwards CW, Kilpatrick CW, Bradley RD. 2006. Neotomine–peromyscine rodent systematics based on combined analyses of nuclear and mitochondrial DNA sequences. Mol Phylogenet Evol. 40:251–258.
  • Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol. 24:1596–1599.
  • Wright J. 2008. History and current status of the Allegheny woodrat. In: Peles JD, Wright J, editors. The Allegheny woodat: ecology, conservation and management of a declining species. New York (NY): Springer; p. 29–40.