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Mitochondrial DNA Part B
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Volume 3, 2018 - Issue 1
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Mitogenome Announcement

Species identification and mitochondrial genomes of ancient fish bones from the Riverine Kachemak tradition of the Kenai Peninsula, Alaska

Alida de FlaminghProgram in Ecology, Evolution and Conservation Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA; View further author information
,
Elizabeth K. MallottDepartment of Anthropology, Northwestern University, Evanston, IL, USA; View further author information
,
Alfred L. RocaProgram in Ecology, Evolution and Conservation Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA; ;Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA; ;Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, IL, USA; View further author information
,
Alan S. BoraasDepartment of Anthropology, University of Alaska, Anchorage, AK, USA; View further author information
&
Ripan S. MalhiProgram in Ecology, Evolution and Conservation Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA; ;Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA; ;Department of Anthropology, University of Illinois at Urbana-Champaign, Urbana, IL, USACorrespondence[email protected]
View further author information
Pages 409-411 | Received 01 Mar 2018, Accepted 17 Mar 2018, Published online: 01 Apr 2018

References

  • Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J Mol Biol. 215:403–410.
  • Cui Y, Lindo J, Hughes CE, Johnson JW, Hernandez AG, Kemp BM, Ma J, Cunningham R, Petzelt B, Mitchell J. 2013. Ancient DNA analysis of mid-Holocene individuals from the Northwest Coast of North America reveals different evolutionary paths for mitogenomes. PLoS One. 8:e66948.
  • Edinborough K, Martindale A, Cook GT, Supernant K, Ames KM. 2016. A marine reservoir effectΔ R value for kitandach, in Prince Rupert Harbour, British Columbia, Canada. Radiocarbon. 58:885–891.
  • Grier C, Flanigan K, Winters M, Jordan LG, Lukowski S, Kemp BM. 2013. Using ancient DNA identification and osteometric measures of archaeological Pacific salmon vertebrae for reconstructing salmon fisheries and site seasonality at Dionisio Point, British Columbia. J Archaeol Sci. 40:544–555.
  • Jónsson H, Ginolhac A, Schubert M, Johnson PL, Orlando L. 2013. mapDamage2. 0: fast approximate Bayesian estimates of ancient DNA damage parameters. Bioinformatics. 29:1682–1684.
  • Langmead B, Salzberg SL. 2012. Fast gapped-read alignment with Bowtie 2. Nat Methods. 9:357–359.
  • Li H, Durbin R. 2010. Fast and accurate long-read alignment with Burrows–Wheeler transform. Bioinformatics. 26:589–595.
  • Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R. 2009. The sequence alignment/map format and SAMtools. Bioinformatics. 25:2078–2079.
  • Lindgreen S. 2012. AdapterRemoval: easy cleaning of next-generation sequencing reads. BMC Res Notes. 5:337.
  • Rambaut A, Drummond A. 2009. FigTree v1. 3.1. Institute of Evolutionary Biology, University of Edinburgh.
  • Reger DR. 1998. Archaeology of the northern Kenai Peninsula and upper Cook Inlet. Arctic Anthropol. 35:160–171.
  • Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30:1312–1313.
  • Wei Z, Wang W, Hu P, Lyon GJ, Hakonarson H. 2011. SNVer: a statistical tool for variant calling in analysis of pooled or individual next-generation sequencing data. Nucleic Acids Res. 39:e132–e132.
  • Yang DY, Cannon A, Saunders SR. 2004. DNA species identification of archaeological salmon bone from the Pacific Northwest Coast of North America. J Archaeol Sci. 31:619–631.

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