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Mitogenome Announcement

Next generation sequencing yields the complete mitogenome of captive forest musk deer, Moschus berezovskii (Ruminantia: Moschidae)

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Pages 472-473 | Received 14 Mar 2018, Accepted 03 Apr 2018, Published online: 23 Apr 2018

References

  • Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF. 2013. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 69:313–319.
  • Gang Y, Wang BB, Ying Z, Wan QH, Fang SG. 2015. Low population density of the endangered forest musk deer, Moschus berezovskii, in China. Pak J Zool. 47:325–333.
  • Hahn C, Bachmann L, Chevreux B. 2013. Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach. Nucleic Acids Res. 41:e129.
  • Hassanin A, Douzery EJ. 2003. Molecular and morphological phylogenies of Ruminantia and the alternative position of the Moschidae. Syst Biol. 52:206–228.
  • IUCN. 2017. The IUCN red list of threatened species. Version 2017-3; [accessed 2018 Mar 09]. www.iucnredlist.org.
  • Kim SI, Lee MY, Jeon HS, Han SH, An J. 2017. Complete mitochondrial genome of Siberian musk deer Moschus moschiferus (Artiodactyla: Moschidae) and phylogenetic relationship with other Moschus species. Mitochondrial DNA B. 2:860–861.
  • Lanfear R, Calcott B, Ho SY, Guindon S. 2012. Partitionfinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Mol Biol Evol. 29:1695–1701.
  • Pan T, Wang H, Hu CC, Sun ZL, Zhu XX, Meng T, Meng XX, Zhang BW. 2015. Species delimitation in the genus Moschus (Ruminantia: Moschidae) and its high-plateau origin. PLoS One. 10:e0134183.
  • Peng HY, Liu SC, Zou FD, Zeng B, Yue BS. 2008. Genetic diversity of captive forest musk deer (Moschus berezovskii) inferred from the mitochondrial DNA control region. Anim Genet. 40:65–72.
  • Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 61:539–542.
  • Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics. 22:2688–2690.
  • Su B, Wang YX, Lan H, Wang W, Zhang YP. 1999. Phylogenetic study of complete cytochrome b genes in musk deer (genus Moschus) using museum samples. Mol Phylogenet Evol. 12:241–249.
  • Yang CZ, Xiang CK, Zhang XY, Yue BS. 2013. The complete mitochondrial genome of the Alpine musk deer (Moschus chrysogaster). Mitochondrial DNA A. 24:501–503.