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Mitochondrial DNA Part B
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Volume 3, 2018 - Issue 2
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Mitogenome Announcement

The first complete chloroplast genome of a major mangrove species Sonneratia alba Sm. and its implications on conservation efforts

Tianhui YuState Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangxi University, Nanning, Guangxi, China; View further author information
,
Damien Daniel HinsingerState Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangxi University, Nanning, Guangxi, China; ;Biodiversity Genomics Team, Plant Ecophysiology and Evolution Group, Guangxi Key Laboratory of Forest Ecology and Conservation, College of Forestry, Guangxi University, Nanning, Guangxi, China; ORCID Iconhttp://orcid.org/0000-0001-7459-7610View further author information
ORCID Icon,
Joeri Sergej StrijkState Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangxi University, Nanning, Guangxi, China; ;Biodiversity Genomics Team, Plant Ecophysiology and Evolution Group, Guangxi Key Laboratory of Forest Ecology and Conservation, College of Forestry, Guangxi University, Nanning, Guangxi, China; ORCID Iconhttp://orcid.org/0000-0003-1109-7015View further author information
ORCID Icon &
Alison Kim Shan WeeState Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangxi University, Nanning, Guangxi, China; ;Ecological Genomics Team, Plant Ecophysiology and Evolution Group, Guangxi Key Laboratory of Forest Ecology and Conservation, College of Forestry, Guangxi University, Nanning, Guangxi, ChinaCorrespondence[email protected]
ORCID Iconhttp://orcid.org/0000-0002-8218-6341View further author information
ORCID Icon
Pages 500-502 | Received 26 Mar 2018, Accepted 03 Apr 2018, Published online: 23 Apr 2018

References

  • Duke N, Kathiresan K, Salmo III SG, Fernando ES, Peras JR, Sukardjo S, Miyagi T. 2010. Sonneratia griffithii. The IUCN Red List of Threatened Species 2010: e.T178799A7609832; [accessed 2018 Mar 2]. http://dx.doi.org/10.2305/IUCN.UK.2010-2.RLTS.T178799A7609832.en
  • Guindon S, Lethiec F, Duroux P, Gascuel O. 2005. PHYML Online—a web server for fast maximum likelihood-based phylogenetic inference. Nucleic Acids Res. 33(Web Server issue):557–559.
  • Kriebel R, Khabbazian M, Sytsma KJ. 2017. A continuous morphological approach to study the evolution of pollen in a phylogenetic context: an example with the order Myrtales. PLoS One. 12:e0187228.
  • Liu C, Shi L, Zhu Y, Chen H, Zhang J, Lin X, Guan X. 2012. CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences. BMC Genomics. 13:715.
  • ORG.ASM. 2016. ORG.ASM: organellar assembler. http://pythonhostedorg/ORGasm/
  • Qiu S, Zhou R-C, Li Y-Q, Havanond S, Jaengjai C, Shi S-H. 2008. Molecular evidence for natural hybridization between Sonneratia alba and S. griffithii. J Syst Evol. 46:391–395.
  • Salmo IIISG, Fernando ES, Peras JR, Sukardjo S, Miyagi T, Ellison J, Koedam NE, Wang Y, Primavera J, Jin Eong O, et al. 2010. Sonneratia ovata. The IUCN Red List of Threatened Species 2010: e.T178814A7615033; [accessed 2018 Mar 2]. http://dx.doi.org/10.2305/IUCN.UK.2010-2.RLTS.T178814A7615033.en
  • Spalding MD, Kainuma M, Collins L. 2010. World Atlas of Mangrove Earthscan.
  • Wee AKS, Teo J, Chua J, Takayama K, Asakawa T, Meenakshisundaram S, Adjie B, Ardli E, Sungkaew S, Suleiman M, et al. 2017. Vicariance and oceanic barriers drive contemporary genetic structure of widespread mangrove species Sonneratia alba J. Sm in the Indo-West Pacific. Forests. 8:483.
  • Xu S, He Z, Guo Z, Zhang Z, Wyckoff GJ, Greenberg A, Wu C, Shi S. 2017. Genome-wide convergence during evolution of mangroves from woody plants. Mol Biol Evol. 34:1008.
  • Yang Y, Li J, Yang S, Li X, Fang L, Zhong C, Duke NC, Zhou R, Shi S. 2017. Effects of Pleistocene sea-level fluctuations on mangrove population dynamics: a lesson from Sonneratia alba. BMC Evol Biol. 17:22.
  • Zhou R, Shi S, Wu CI. 2005. Molecular criteria for determining new hybrid species-an application to the Sonneratia hybrids. Mol Phylogenet Evol. 35:595–601.

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