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Mitogenome Announcement

The complete chloroplast genome sequence of medicinal fern Polypodiodes niponica (Polypodiaceae)

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Pages 770-771 | Received 29 May 2018, Accepted 18 Jun 2018, Published online: 11 Jul 2018

References

  • Andrews S. 2010. FastQC: a quality control tool for high throughput sequence data. Cambridge (UK): the Babraham Institute; [accessed 2017 Jul 15]. http://www.bioinformatics.babraham.ac.uk/projects/fastqc/.
  • Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30:2114–2120.
  • Katoh K, Misawa K, Kuma K, Miyata T. 2002. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30:3059–3066.
  • Lu SG, Li CX. 2006. Phylogenetic position of the monotypic genus Metapolypodium Ching endemic to Asia: evidence from chloroplast DNA sequences of rbcL gene and rps4-trnS region. Acta Phytotaxon Sin. 44:494–502.
  • Liu YJ, Wujisguleng W, Long CL. 2012. Food uses of ferns in China: a review. Acta Soc Bot Pol. 81:263–270.
  • Schneider H, Smith AR, Cranfill R, Hildebrand TJ, Haufler CH, Ranker TA. 2004. Unraveling the phylogeny of polygrammoid ferns (Polypodiaceae and Grammitidaceae): exploring aspects of the diversification of epiphytic plants. Mol Phylogenet Evol. 31:1041–1063.
  • Schattner P, Brooks AN, Lowe TM. 2005. The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucleic Acids Res. 33:W686–W689.
  • Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30:1312–1313.
  • Wyman SK, Jansen RK, Boore JL. 2004. Automatic annotation of organellar genomes with DOGMA. Bioinformatics. 20:3252–3255.
  • Wang YL, Gao H, Wang MH, Feng XL, Zhang L. 2009. Determination of total flavonoids in Polypodiodes niponica. Chin Wild Plant Resour. 28:62–66.
  • Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821–829.
  • Zhang XC, Lu SG, Lin YX, Qi XP, Moore S, Xing FW, Wang FG, Hovenkamp PH, Gilbert MG, Nooteboom HP, et al. 2013. Polypodiaceae. In: Wu ZY, Raven PH, Hong DY, eds., Flora of China. Vol. 2–3 (Pteridophytes). Beijing: Science Press; p. 758–850.